Wall clock time and date at job start Tue Mar 31 2020 09:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48495 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47175 * 299.99832 * 3 2 1 6 6 H 1.48506 * 109.47331 * 59.99679 * 3 2 1 7 7 C 1.37879 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00218 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47053 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47032 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47096 * 180.02562 * 11 10 9 13 13 C 1.39993 * 120.00177 * 180.02562 * 12 11 10 14 14 C 1.38798 * 120.05465 * 359.97438 * 13 12 11 15 15 C 1.38160 * 119.97726 * 180.02562 * 14 13 12 16 16 C 1.38457 * 120.08386 * 0.02562 * 15 14 13 17 17 F 1.35104 * 119.94624 * 179.97438 * 16 15 14 18 18 C 1.38469 * 120.10996 * 0.24566 * 16 15 14 19 19 C 1.50698 * 119.98679 * 179.72575 * 18 16 15 20 20 F 1.39904 * 109.47221 * 30.00690 * 19 18 16 21 21 F 1.39896 * 109.47229 * 150.00288 * 19 18 16 22 22 F 1.39905 * 109.47247 * 270.00809 * 19 18 16 23 23 C 1.38292 * 120.02154 * 359.45990 * 18 16 15 24 24 F 1.35105 * 120.03856 * 180.29041 * 23 18 16 25 25 H 0.96998 * 120.00387 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47567 * 60.00217 * 9 7 2 27 27 H 1.09000 * 109.47665 * 300.00218 * 9 7 2 28 28 H 1.08997 * 109.46983 * 60.00198 * 10 9 7 29 29 H 1.08993 * 109.47111 * 299.99984 * 10 9 7 30 30 H 1.08997 * 109.47241 * 60.00152 * 11 10 9 31 31 H 1.09009 * 109.47359 * 299.99961 * 11 10 9 32 32 H 0.96999 * 119.99905 * 359.97438 * 12 11 10 33 33 H 1.08001 * 120.01285 * 0.02562 * 14 13 12 34 34 H 1.07995 * 119.96564 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9659 -7.4204 -0.0005 14 6 0.6015 -7.6754 -0.0015 15 6 0.1428 -8.9787 -0.0019 16 6 1.0425 -10.0311 -0.0008 17 9 0.5908 -11.3044 -0.0007 18 6 2.4043 -9.7808 0.0059 19 6 3.3810 -10.9284 0.0134 20 9 2.8170 -12.0252 -0.6471 21 9 4.5566 -10.5445 -0.6406 22 9 3.6762 -11.2810 1.3347 23 6 2.8684 -8.4781 0.0002 24 9 4.1971 -8.2335 0.0008 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8720 -3.6042 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 0.8541 -5.0446 -0.8903 31 1 0.8534 -5.0451 0.8897 32 1 3.3861 -5.9233 0.0008 33 1 -0.1013 -6.8554 -0.0019 34 1 -0.9188 -9.1769 -0.0031 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:36 Heat of formation + Delta-G solvation = -226.663579 kcal Electronic energy + Delta-G solvation = -24941.976508 eV Core-core repulsion = 20288.387561 eV Total energy + Delta-G solvation = -4653.588946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.085 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.45803 -49.32332 -49.10351 -47.84115 -47.78257 -39.59944 -36.43551 -33.81300 -32.15519 -31.67040 -29.09853 -26.59294 -26.19415 -23.56328 -23.10676 -21.78307 -20.61315 -18.89829 -18.85695 -18.74817 -17.98849 -17.44061 -16.54563 -16.40296 -16.30929 -15.84872 -15.59239 -14.98663 -14.95800 -14.74597 -14.58191 -14.50666 -14.34914 -14.23954 -13.97590 -13.95012 -13.30770 -13.22106 -12.96566 -12.69318 -12.41233 -11.94329 -11.89582 -11.62612 -11.03263 -10.86849 -10.63347 -10.40026 -9.89782 -9.61782 -9.58441 -9.23899 -8.47683 -7.64390 -6.12508 -4.15547 0.32212 0.78523 2.28573 2.94949 3.10197 3.23770 3.31954 3.33386 3.35710 3.53324 3.70195 4.03877 4.11176 4.36289 4.40215 4.59276 4.91180 5.24089 5.27900 5.29673 5.47968 5.49757 5.60832 5.71053 5.87147 6.13117 6.38451 6.44347 6.80866 6.98446 7.46023 7.49360 7.60187 7.85437 8.26638 8.90956 9.49676 10.98770 Molecular weight = 309.08amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.002570 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.915365 B =10893.270377 C =11584.757821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.728 5.728 13 C 0.192 3.808 14 C -0.119 4.119 15 C -0.106 4.106 16 C 0.101 3.899 17 F -0.125 7.125 18 C -0.212 4.212 19 C 0.516 3.484 20 F -0.169 7.169 21 F -0.168 7.168 22 F -0.172 7.172 23 C 0.084 3.916 24 F -0.120 7.120 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.407 0.593 33 H 0.155 0.845 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 -21.514 -0.021 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.355 5.355 13 C 0.084 3.916 14 C -0.143 4.143 15 C -0.125 4.125 16 C 0.079 3.921 17 F -0.103 7.103 18 C -0.216 4.216 19 C 0.462 3.538 20 F -0.150 7.150 21 F -0.150 7.150 22 F -0.153 7.153 23 C 0.059 3.941 24 F -0.098 7.098 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.243 0.757 33 H 0.173 0.827 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.785 -21.258 -0.019 21.333 hybrid contribution 1.135 0.665 0.004 1.315 sum 2.920 -20.592 -0.015 20.798 Atomic orbital electron populations 1.69952 1.06069 1.26726 1.50550 1.25015 0.94870 0.99373 0.95113 0.86523 0.80106 0.83628 0.77675 1.19716 1.20931 1.20935 1.21224 0.93098 0.90874 1.51031 0.92561 1.19029 0.93753 0.90873 0.97585 1.21883 0.99919 0.92882 1.01308 1.21825 0.92079 0.85482 1.01272 1.45157 1.10144 1.01266 1.78903 1.17829 0.92413 0.85134 0.96273 1.20734 0.92989 0.97372 1.03161 1.20982 1.00399 0.90620 1.00546 1.16652 0.89501 0.80086 1.05868 1.91562 1.89205 1.35589 1.93963 1.19781 0.93583 0.92495 1.15696 1.17871 0.79750 0.81848 0.74346 1.93241 1.84722 1.56113 1.80908 1.93247 1.49615 1.90923 1.81186 1.93241 1.93769 1.92728 1.35580 1.16282 0.77960 0.90610 1.09209 1.91549 1.29550 1.94702 1.94017 0.92903 0.96262 0.96251 0.92492 0.92497 0.91738 0.91741 0.75747 0.82725 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.99 9.11 -34.44 -0.31 -14.31 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.15 5.27 -26.73 -0.14 -2.29 16 11 C 0.12 1.60 4.92 -4.04 -0.02 1.58 16 12 N -0.73 -8.96 5.74 -58.54 -0.34 -9.30 16 13 C 0.19 2.22 6.66 -83.63 -0.56 1.66 16 14 C -0.12 -1.16 9.31 -39.40 -0.37 -1.53 16 15 C -0.11 -0.94 10.02 -39.53 -0.40 -1.33 16 16 C 0.10 1.09 7.14 -39.42 -0.28 0.81 16 17 F -0.12 -1.40 15.42 2.25 0.03 -1.37 16 18 C -0.21 -2.51 5.46 -104.52 -0.57 -3.08 16 19 C 0.52 6.28 3.25 36.00 0.12 6.40 16 20 F -0.17 -2.04 15.47 2.25 0.03 -2.01 16 21 F -0.17 -2.13 15.46 2.25 0.03 -2.09 16 22 F -0.17 -2.12 17.30 2.25 0.04 -2.09 16 23 C 0.08 1.02 7.15 -39.26 -0.28 0.74 16 24 F -0.12 -1.54 14.79 2.25 0.03 -1.51 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.86 7.95 -51.93 -0.41 0.45 16 31 H 0.06 0.86 7.95 -51.92 -0.41 0.45 16 32 H 0.41 4.87 7.96 -40.82 -0.33 4.55 16 33 H 0.16 1.31 6.74 -52.49 -0.35 0.96 16 34 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -28.42 314.31 -5.91 -34.33 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -3.16 Total: -2.20 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.05 Total: -9.40 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.40 Total: -34.22 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 0.18 Total: -9.07 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.42 -5.91 -34.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.329 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds