Wall clock time and date at job start Tue Mar 31 2020 09:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40307 * 120.49955 * 212.98039 * 3 2 1 5 5 C 1.37976 * 118.35138 * 179.77258 * 4 3 2 6 6 C 1.39147 * 119.27219 * 0.49188 * 5 4 3 7 7 O 1.35537 * 119.52600 * 179.76954 * 6 5 4 8 8 C 1.35892 * 118.00307 * 184.76321 * 7 6 5 9 9 C 1.38884 * 120.01226 * 75.32963 * 8 7 6 10 10 C 1.38215 * 120.10583 * 180.29521 * 9 8 7 11 11 C 1.38117 * 120.13969 * 359.45118 * 10 9 8 12 12 C 1.39064 * 120.02466 * 0.27504 * 11 10 9 13 13 N 1.39524 * 120.05030 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99695 * 145.20144 * 13 12 11 15 15 O 1.21742 * 120.00223 * 354.65677 * 14 13 12 16 16 C 1.46164 * 119.99857 * 174.66530 * 14 13 12 17 17 H 1.08001 * 119.99565 * 359.97438 * 16 14 13 18 18 C 1.40118 * 119.99816 * 179.97438 * 16 14 13 19 19 N 1.30631 * 120.00666 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99682 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47156 * 60.00304 * 20 18 16 22 22 H 1.48505 * 109.47314 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47521 * 300.00195 * 20 18 16 24 24 C 1.38550 * 120.01617 * 255.07571 * 8 7 6 25 25 N 1.32405 * 120.95458 * 359.49563 * 6 5 4 26 26 C 1.31673 * 121.80270 * 0.25253 * 25 6 5 27 27 H 1.07998 * 120.81941 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.36692 * 180.26677 * 5 4 3 29 29 H 1.08002 * 119.94690 * 0.02562 * 9 8 7 30 30 H 1.08005 * 119.92608 * 179.72118 * 10 9 8 31 31 H 1.07991 * 119.98707 * 180.25083 * 11 10 9 32 32 H 0.97000 * 120.00056 * 325.20487 * 13 12 11 33 33 H 0.96995 * 120.01060 * 180.02562 * 19 18 16 34 34 H 1.07996 * 120.06751 * 359.95589 * 24 8 7 35 35 H 1.08003 * 119.68754 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2797 1.0151 0.6581 5 6 4.6585 0.9697 0.6340 6 6 5.2934 -0.0657 -0.0450 7 8 6.6476 -0.1127 -0.0759 8 6 7.2354 -1.0793 -0.8289 9 6 7.2652 -0.9602 -2.2123 10 6 7.8572 -1.9451 -2.9803 11 6 8.4313 -3.0456 -2.3746 12 6 8.4096 -3.1678 -0.9895 13 7 8.9889 -4.2796 -0.3771 14 6 9.6023 -4.1485 0.8159 15 8 9.7368 -3.0456 1.3133 16 6 10.1063 -5.3307 1.5122 17 1 9.9867 -6.3092 1.0710 18 6 10.7445 -5.1943 2.7522 19 7 10.8895 -4.0108 3.2856 20 14 11.3879 -6.7052 3.6425 21 1 12.3966 -7.3882 2.7930 22 1 12.0159 -6.2946 4.9241 23 1 10.2626 -7.6340 3.9184 24 6 7.8099 -2.1814 -0.2165 25 7 4.5937 -1.0088 -0.6568 26 6 3.2770 -1.0074 -0.6549 27 1 2.7610 1.8094 1.1742 28 1 5.2387 1.7315 1.1335 29 1 6.8213 -0.0987 -2.6889 30 1 7.8748 -1.8517 -4.0562 31 1 8.8967 -3.8117 -2.9768 32 1 8.9501 -5.1469 -0.8098 33 1 11.3317 -3.9163 4.1438 34 1 7.7918 -2.2732 0.8594 35 1 2.7405 -1.7940 -1.1647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362004751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:42 Heat of formation + Delta-G solvation = 32.370984 kcal Electronic energy + Delta-G solvation = -23215.604596 eV Core-core repulsion = 19565.794158 eV Total energy + Delta-G solvation = -3649.810438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18282 -39.56584 -38.38031 -36.81283 -36.42628 -33.43210 -32.95288 -32.48372 -31.43754 -29.76269 -28.90083 -26.29032 -24.77057 -24.29711 -22.54672 -21.86508 -20.07569 -19.34726 -18.75724 -17.68032 -17.36597 -16.16925 -15.98411 -15.53443 -15.38059 -14.92175 -14.58647 -14.43299 -14.34384 -14.09154 -13.68631 -13.53146 -13.32413 -13.13492 -12.70362 -12.60847 -12.48890 -12.21085 -11.81730 -11.41403 -11.31063 -11.10862 -10.90401 -10.64767 -10.41094 -10.30792 -9.92233 -9.41872 -8.95248 -8.83087 -8.40895 -7.81267 -7.21188 -6.39147 -4.87125 0.38332 0.88173 1.49667 1.89801 2.37841 2.71300 3.00788 3.06594 3.11644 3.13330 3.57638 3.59935 3.94087 4.01110 4.14214 4.39151 4.47010 4.53021 4.76401 4.79371 5.25753 5.33009 5.42598 5.48005 5.58241 5.60328 5.65525 5.82256 5.97850 6.10175 6.33232 6.70979 6.81814 6.88107 6.95692 7.17958 7.24225 7.44184 7.66213 7.68901 7.96877 8.09860 8.80297 9.14314 10.32633 10.51669 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.003160 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.088601 B = 8859.783349 C = 9670.539240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.267 3.733 3 C -0.133 4.133 4 C 0.007 3.993 5 C -0.189 4.189 6 C 0.356 3.644 7 O -0.235 6.235 8 C 0.101 3.899 9 C -0.160 4.160 10 C -0.087 4.087 11 C -0.170 4.170 12 C 0.206 3.794 13 N -0.699 5.699 14 C 0.541 3.459 15 O -0.559 6.559 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.086 3.914 19 N -0.758 5.758 20 Si 0.913 3.087 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.117 4.117 25 N -0.520 5.520 26 C 0.201 3.799 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.396 0.604 33 H 0.273 0.727 34 H 0.144 0.856 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 6.344 -8.201 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.048 4.048 3 C -0.140 4.140 4 C -0.021 4.021 5 C -0.210 4.210 6 C 0.178 3.822 7 O -0.138 6.138 8 C 0.059 3.941 9 C -0.180 4.180 10 C -0.106 4.106 11 C -0.191 4.191 12 C 0.107 3.893 13 N -0.343 5.343 14 C 0.348 3.652 15 O -0.440 6.440 16 C -0.574 4.574 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.386 5.386 20 Si 0.737 3.263 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.139 4.139 25 N -0.242 5.242 26 C 0.040 3.960 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.263 6.701 -7.864 15.284 hybrid contribution 0.406 -0.640 0.572 0.949 sum -10.857 6.061 -7.292 14.415 Atomic orbital electron populations 1.81278 1.11875 1.07789 1.08883 1.25295 0.92116 0.93843 0.93575 1.16847 0.85660 1.01830 1.09651 1.21381 0.92662 0.95497 0.92514 1.21023 0.94119 1.00620 1.05201 1.20438 0.84384 0.88891 0.88477 1.84657 1.14595 1.50028 1.64562 1.18263 0.97735 0.89060 0.89079 1.20895 1.04740 1.00344 0.92058 1.20567 0.97815 0.93214 0.98985 1.21002 1.04696 1.00062 0.93370 1.17656 0.91225 0.89630 0.90799 1.44199 1.57870 1.08331 1.23871 1.18409 0.77756 0.90862 0.78158 1.90659 1.60149 1.27631 1.65574 1.20816 1.39611 0.92611 1.04326 0.90964 1.25743 0.94082 0.96782 0.96913 1.69963 1.30262 1.23227 1.15130 0.86334 0.79580 0.81616 0.78730 1.19095 1.20375 1.19101 1.21205 0.98435 0.92231 1.02014 1.67582 1.08585 1.25682 1.22337 1.22644 0.88053 0.94320 0.91014 0.83106 0.82678 0.86648 0.85965 0.85991 0.77069 0.91597 0.83867 0.81360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.13 18.54 41.84 0.78 -4.35 16 2 C 0.27 2.64 15.37 -22.47 -0.35 2.30 16 3 C -0.13 -1.18 5.75 -106.70 -0.61 -1.79 16 4 C 0.01 0.05 9.90 -38.90 -0.39 -0.33 16 5 C -0.19 -1.83 10.02 -39.34 -0.39 -2.22 16 6 C 0.36 4.77 7.38 -16.97 -0.13 4.65 16 7 O -0.23 -3.88 9.95 -2.47 -0.02 -3.90 16 8 C 0.10 1.80 5.10 -39.23 -0.20 1.60 16 9 C -0.16 -2.45 9.68 -39.35 -0.38 -2.83 16 10 C -0.09 -1.25 10.03 -39.63 -0.40 -1.64 16 11 C -0.17 -2.74 9.97 -39.32 -0.39 -3.13 16 12 C 0.21 4.14 6.24 -83.79 -0.52 3.62 16 13 N -0.70 -15.10 5.32 -11.21 -0.06 -15.16 16 14 C 0.54 14.58 7.46 -13.08 -0.10 14.49 16 15 O -0.56 -17.05 12.80 5.15 0.07 -16.98 16 16 C -0.54 -14.30 9.53 -35.70 -0.34 -14.64 16 17 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 18 C 0.09 2.28 5.50 -17.36 -0.10 2.19 16 19 N -0.76 -21.61 11.82 55.55 0.66 -20.96 16 20 Si 0.91 19.11 29.56 -169.99 -5.02 14.08 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.12 -2.47 8.58 -39.21 -0.34 -2.81 16 25 N -0.52 -6.85 9.14 -12.95 -0.12 -6.97 16 26 C 0.20 1.99 10.91 -17.13 -0.19 1.80 16 27 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 30 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.40 7.19 8.80 -40.82 -0.36 6.84 16 33 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 34 H 0.14 3.51 6.52 -52.49 -0.34 3.17 16 35 H 0.17 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -33.83 329.69 -6.36 -40.19 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -2.78 Total: 7.86 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -4.81 Total: 1.22 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 1.25 Total: -47.43 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.04 Total: -20.89 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.83 -6.36 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362004751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.556 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds