Wall clock time and date at job start Tue Mar 31 2020 09:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99391 * 2 1 4 4 H 1.48503 * 109.46943 * 239.99919 * 3 2 1 5 5 H 1.48495 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46993 * 119.99995 * 3 2 1 7 7 C 1.37873 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99578 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00277 * 359.72337 * 7 2 1 10 10 C 1.53932 * 113.73233 * 277.00715 * 9 7 2 11 11 N 1.47969 * 86.17758 * 221.91638 * 10 9 7 12 12 C 1.38551 * 110.99624 * 137.58115 * 11 10 9 13 13 C 1.39571 * 120.52081 * 202.19570 * 12 11 10 14 14 C 1.38277 * 118.32214 * 180.02562 * 13 12 11 15 15 Cl 1.73594 * 120.41377 * 179.97438 * 14 13 12 16 16 N 1.32684 * 119.16923 * 359.97438 * 14 13 12 17 17 C 1.31767 * 120.99017 * 0.02562 * 16 14 13 18 18 C 1.50699 * 119.07892 * 179.97438 * 17 16 14 19 19 H 1.08995 * 109.86816 * 163.99201 * 18 17 16 20 20 C 1.54096 * 109.87976 * 285.00228 * 18 17 16 21 21 C 1.54811 * 104.19075 * 121.45370 * 20 18 17 22 22 C 1.54997 * 102.08733 * 20.87807 * 21 20 18 23 23 O 1.43752 * 109.87553 * 42.83285 * 18 17 16 24 24 N 1.31771 * 121.84190 * 359.71297 * 17 16 14 25 25 C 1.47962 * 90.76081 * 24.68825 * 11 10 9 26 26 H 0.96991 * 120.00933 * 359.97438 * 1 2 3 27 27 H 1.09004 * 112.93134 * 48.70788 * 9 7 2 28 28 H 1.08993 * 113.75908 * 336.22989 * 10 9 7 29 29 H 1.09002 * 113.75822 * 107.60331 * 10 9 7 30 30 H 1.08005 * 120.83776 * 0.02562 * 13 12 11 31 31 H 1.09001 * 110.48540 * 240.13361 * 20 18 17 32 32 H 1.09006 * 110.48669 * 2.77375 * 20 18 17 33 33 H 1.08991 * 110.91047 * 139.07581 * 21 20 18 34 34 H 1.09004 * 110.90693 * 262.64959 * 21 20 18 35 35 H 1.09002 * 110.61612 * 81.48095 * 22 21 20 36 36 H 1.09005 * 110.61354 * 204.47405 * 22 21 20 37 37 H 1.08998 * 113.75769 * 220.99175 * 25 11 10 38 38 H 1.09006 * 113.75570 * 89.62942 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0074 10 6 0.7986 -2.9457 1.4092 11 7 1.2181 -4.3054 1.0032 12 6 1.8968 -4.9427 2.0293 13 6 2.7653 -6.0003 1.7551 14 6 3.4188 -6.6039 2.8137 15 17 4.5105 -7.9244 2.5347 16 7 3.2010 -6.1611 4.0453 17 6 2.3743 -5.1599 4.2701 18 6 2.1584 -4.6921 5.6863 19 1 1.6904 -3.7078 5.6839 20 6 1.2639 -5.6959 6.4391 21 6 2.1286 -6.1476 7.6411 22 6 3.1554 -4.9921 7.7547 23 8 3.4163 -4.6369 6.3798 24 7 1.7350 -4.5530 3.2906 25 6 2.1620 -3.7401 0.0139 26 1 -0.4851 0.8399 0.0004 27 1 0.4621 -2.5380 -0.7435 28 1 1.3958 -2.5252 2.2183 29 1 -0.2742 -2.8486 1.5759 30 1 2.9229 -6.3387 0.7416 31 1 0.3525 -5.2091 6.7862 32 1 1.0239 -6.5464 5.8008 33 1 1.5267 -6.2235 8.5466 34 1 2.6279 -7.0928 7.4278 35 1 2.7254 -4.1482 8.2942 36 1 4.0678 -5.3360 8.2420 37 1 2.1786 -4.2776 -0.9342 38 1 3.1580 -3.5519 0.4149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884554708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:30 Heat of formation + Delta-G solvation = 40.981893 kcal Electronic energy + Delta-G solvation = -23061.743159 eV Core-core repulsion = 19545.706363 eV Total energy + Delta-G solvation = -3516.036796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.35199 -39.56522 -38.61417 -36.82610 -33.55820 -32.93282 -32.28710 -31.97379 -29.17793 -28.24626 -25.63621 -24.99655 -24.07224 -22.82221 -21.90132 -21.03446 -18.98895 -17.96901 -17.57736 -16.66557 -16.26955 -15.91757 -15.36308 -15.09744 -14.98452 -14.75360 -14.37948 -14.28683 -13.76071 -13.44819 -13.01610 -12.47912 -12.14686 -11.94142 -11.89232 -11.63401 -11.45278 -11.42104 -11.18981 -11.05855 -10.97743 -10.71045 -10.64992 -10.49469 -9.92277 -9.86902 -9.67581 -9.49033 -9.19088 -9.14943 -8.57519 -8.22082 -6.16289 -4.22259 0.85689 1.12394 1.61420 3.26127 3.27899 3.31338 3.34149 3.75012 3.99674 4.09799 4.34233 4.43753 4.68577 4.72424 4.78776 4.93783 5.10477 5.13222 5.15611 5.23987 5.40812 5.52645 5.54681 5.61056 5.72454 5.80608 5.91731 5.96800 6.08612 6.18615 6.32335 6.53085 6.68564 6.72375 6.95033 7.14561 7.50563 7.63936 7.81798 8.15621 8.18610 8.79675 9.44039 10.93108 Molecular weight = 309.10amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.004191 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.998666 B = 6679.932788 C = 7929.631901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.036 3.964 11 N -0.443 5.443 12 C 0.362 3.638 13 C -0.234 4.234 14 C 0.232 3.768 15 Cl -0.024 7.024 16 N -0.522 5.522 17 C 0.358 3.642 18 C 0.150 3.850 19 H 0.103 0.897 20 C -0.139 4.139 21 C -0.150 4.150 22 C 0.047 3.953 23 O -0.356 6.356 24 N -0.533 5.533 25 C 0.017 3.983 26 H 0.265 0.735 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -12.808 11.132 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.019 3.981 10 C -0.090 4.090 11 N -0.160 5.160 12 C 0.122 3.878 13 C -0.261 4.261 14 C 0.062 3.938 15 Cl 0.004 6.996 16 N -0.242 5.242 17 C 0.088 3.912 18 C 0.090 3.910 19 H 0.121 0.879 20 C -0.178 4.178 21 C -0.188 4.188 22 C -0.029 4.029 23 O -0.273 6.273 24 N -0.254 5.254 25 C -0.109 4.109 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.172 0.828 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.362 -12.881 11.654 17.693 hybrid contribution 0.953 0.614 -0.500 1.239 sum 4.315 -12.267 11.154 17.132 Atomic orbital electron populations 1.69932 1.06004 1.27213 1.48854 1.24984 0.94839 0.99255 0.94215 0.86637 0.79673 0.82822 0.78817 1.20044 1.21108 1.20109 1.20929 0.92798 0.89912 1.52469 0.92256 1.20450 0.93816 0.90918 0.92869 1.24268 1.01512 0.81349 1.01883 1.65418 1.23955 1.19217 1.07362 1.21050 0.86235 0.90368 0.90177 1.22159 1.02057 1.00608 1.01232 1.21674 0.91628 0.90506 0.90029 1.98402 1.61461 1.44438 1.95281 1.67512 1.19333 1.15229 1.22095 1.22598 0.87156 0.86403 0.95083 1.21284 0.85590 0.99372 0.84749 0.87944 1.22901 0.98705 0.99185 0.97017 1.23114 0.97704 0.99905 0.98040 1.23577 0.99431 0.96009 0.83925 1.88985 1.27730 1.89995 1.20611 1.68135 1.27276 1.30138 0.99834 1.24364 0.95423 0.97291 0.93830 0.92569 0.91347 0.90139 0.90381 0.82781 0.89604 0.90445 0.90067 0.90123 0.91894 0.88742 0.89954 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.41 13.28 55.43 0.74 -23.67 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.60 8.77 -34.44 -0.30 -13.90 16 8 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.04 0.91 3.61 -90.85 -0.33 0.58 16 10 C 0.04 0.81 7.03 -2.76 -0.02 0.79 16 11 N -0.44 -8.79 6.30 -176.56 -1.11 -9.90 16 12 C 0.36 6.81 6.11 -154.77 -0.95 5.87 16 13 C -0.23 -3.82 9.26 -39.07 -0.36 -4.18 16 14 C 0.23 3.72 7.33 -17.17 -0.13 3.59 16 15 Cl -0.02 -0.32 29.15 -51.86 -1.51 -1.83 16 16 N -0.52 -8.91 10.12 -7.94 -0.08 -8.99 16 17 C 0.36 6.16 6.42 -157.24 -1.01 5.15 16 18 C 0.15 2.14 3.84 -27.31 -0.10 2.04 16 19 H 0.10 1.43 8.13 -51.93 -0.42 1.01 16 20 C -0.14 -1.53 6.63 -25.20 -0.17 -1.70 16 21 C -0.15 -1.35 7.15 -24.72 -0.18 -1.52 16 22 C 0.05 0.47 7.72 38.21 0.29 0.76 16 23 O -0.36 -5.20 11.00 -35.23 -0.39 -5.59 16 24 N -0.53 -10.11 8.70 -9.97 -0.09 -10.20 16 25 C 0.02 0.32 6.93 -2.77 -0.02 0.31 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.07 1.73 8.13 -51.93 -0.42 1.31 16 28 H 0.08 1.90 7.16 -51.93 -0.37 1.53 16 29 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.15 2.18 8.01 -52.48 -0.42 1.76 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.35 7.84 -51.93 -0.41 0.95 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -28.71 335.73 -10.71 -39.42 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.95 Total: 0.64 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -3.36 Total: -0.44 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.54 Total: -52.76 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.39 Total: -5.59 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.71 -10.71 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884554708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.407 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds