Wall clock time and date at job start Tue Mar 31 2020 09:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85162 * 25.32541 * 10 9 7 12 12 C 1.53781 * 113.61544 * 156.52457 * 10 9 7 13 13 C 1.53782 * 87.08036 * 139.98034 * 12 10 9 14 14 H 1.09002 * 113.61800 * 89.20186 * 13 12 10 15 15 N 1.46504 * 113.61584 * 220.02140 * 13 12 10 16 16 C 1.34773 * 120.00156 * 204.99931 * 15 13 12 17 17 O 1.21278 * 120.00201 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00099 * 179.97438 * 16 15 13 19 19 C 1.50701 * 109.47212 * 180.02562 * 18 16 15 20 20 C 1.38650 * 120.79541 * 100.00548 * 19 18 16 21 21 C 1.38192 * 119.17546 * 179.97438 * 20 19 18 22 22 N 1.31872 * 120.79635 * 359.97438 * 21 20 19 23 23 C 1.31845 * 121.73967 * 0.02562 * 22 21 20 24 24 C 1.38357 * 120.74438 * 359.73996 * 23 22 21 25 25 Cl 1.73601 * 120.43289 * 180.28947 * 24 23 22 26 26 C 1.53788 * 113.61484 * 254.13346 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09001 * 113.61675 * 254.52741 * 12 10 9 30 30 H 1.08997 * 113.61543 * 25.43518 * 12 10 9 31 31 H 0.97001 * 119.99950 * 24.99427 * 15 13 12 32 32 H 1.09003 * 109.47843 * 300.00591 * 18 16 15 33 33 H 1.09004 * 109.46683 * 60.00107 * 18 16 15 34 34 H 1.08001 * 120.41110 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.59624 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.62549 * 179.97438 * 23 22 21 37 37 H 1.08999 * 113.60639 * 334.56736 * 26 10 9 38 38 H 1.09000 * 113.61378 * 105.46782 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0556 -3.5696 0.4289 12 6 1.2463 -4.8367 0.5585 13 6 1.8608 -5.6901 -0.5635 14 1 2.8043 -6.1609 -0.2872 15 7 0.9144 -6.6275 -1.1733 16 6 1.3662 -7.7467 -1.7730 17 8 2.5563 -7.9781 -1.8075 18 6 0.3927 -8.7113 -2.3997 19 6 1.1481 -9.8705 -2.9970 20 6 1.2431 -11.0786 -2.3232 21 6 1.9436 -12.1196 -2.9023 22 7 2.5171 -11.9744 -4.0808 23 6 2.4482 -10.8409 -4.7508 24 6 1.7601 -9.7562 -4.2368 25 17 1.6682 -8.2700 -5.1292 26 6 2.0334 -4.3823 -1.3574 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.5540 -5.1429 1.5584 30 1 0.1679 -4.7071 0.4676 31 1 -0.0374 -6.4428 -1.1453 32 1 -0.2949 -9.0798 -1.6384 33 1 -0.1704 -8.2023 -3.1820 34 1 0.7754 -11.2044 -1.3579 35 1 2.0222 -13.0634 -2.3832 36 1 2.9311 -10.7595 -5.7134 37 1 1.1705 -4.1281 -1.9729 38 1 2.9757 -4.3221 -1.9019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022716708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:15 Heat of formation + Delta-G solvation = 22.080884 kcal Electronic energy + Delta-G solvation = -22098.597842 eV Core-core repulsion = 18581.741436 eV Total energy + Delta-G solvation = -3516.856405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83671 -39.78454 -38.09496 -36.90179 -34.39515 -34.17377 -32.93530 -31.39803 -29.84973 -28.76168 -25.25941 -24.40268 -23.92297 -23.27786 -22.06199 -20.54090 -19.41875 -17.55022 -17.29434 -17.22906 -17.10837 -16.41229 -15.97170 -15.22214 -14.92061 -14.60123 -14.34821 -14.22113 -13.77182 -13.60110 -13.22068 -13.07244 -12.90622 -12.33219 -12.28927 -12.06058 -11.93955 -11.50570 -11.07181 -10.91590 -10.69835 -10.53884 -10.35691 -10.20520 -9.99045 -9.94122 -9.70652 -9.26960 -9.19896 -8.97373 -8.84888 -7.09835 -6.16416 -3.16690 0.58395 0.71444 1.75388 2.52662 3.05448 3.40594 3.49734 3.52785 3.70169 4.01929 4.05797 4.22312 4.52493 4.62575 4.65840 4.82982 4.87719 4.94896 5.10124 5.11375 5.20411 5.24055 5.42084 5.44485 5.68476 5.73258 5.77842 5.98332 6.09237 6.11556 6.17208 6.35173 6.50677 6.61754 6.93064 7.46899 7.47836 7.76500 8.15054 8.69356 9.15238 10.01674 10.16003 11.31667 Molecular weight = 309.10amu Principal moments of inertia in cm(-1) A = 0.030156 B = 0.002532 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.274659 B =11057.476220 C =11493.933054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.336 4.336 8 H 0.066 0.934 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.080 0.920 12 C -0.159 4.159 13 C 0.120 3.880 14 H 0.110 0.890 15 N -0.713 5.713 16 C 0.518 3.482 17 O -0.533 6.533 18 C -0.113 4.113 19 C -0.011 4.011 20 C -0.151 4.151 21 C 0.101 3.899 22 N -0.472 5.472 23 C 0.114 3.886 24 C -0.074 4.074 25 Cl -0.046 7.046 26 C -0.175 4.175 27 H 0.254 0.746 28 H 0.368 0.632 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.400 0.600 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.078 0.922 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -24.214 -5.936 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.084 0.916 9 N -0.361 5.361 10 C 0.061 3.939 11 H 0.098 0.902 12 C -0.199 4.199 13 C 0.015 3.985 14 H 0.128 0.872 15 N -0.363 5.363 16 C 0.303 3.697 17 O -0.409 6.409 18 C -0.153 4.153 19 C -0.020 4.020 20 C -0.171 4.171 21 C -0.055 4.055 22 N -0.181 5.181 23 C -0.044 4.044 24 C -0.103 4.103 25 Cl -0.017 7.017 26 C -0.218 4.218 27 H 0.065 0.935 28 H 0.201 0.799 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.234 0.766 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.182 0.818 37 H 0.096 0.904 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.187 -23.216 -6.374 24.075 hybrid contribution -1.088 -0.769 0.252 1.356 sum -0.901 -23.984 -6.122 24.770 Atomic orbital electron populations 1.70903 1.06057 1.28358 1.53474 1.25812 0.97035 1.01113 1.00212 0.83243 0.74248 0.75519 0.75951 1.21006 1.22171 1.22186 1.20106 0.92159 0.85803 1.48582 0.91574 1.42353 1.04685 1.00765 1.88326 1.21286 0.95367 0.84442 0.92758 0.90198 1.23855 1.00919 0.97499 0.97629 1.22514 0.93420 0.87594 0.94950 0.87230 1.46001 1.10694 1.22114 1.57471 1.20162 0.89303 0.81797 0.78479 1.90733 1.16594 1.75381 1.58219 1.20786 0.98124 0.94084 1.02310 1.19616 0.95363 0.94926 0.92073 1.22051 1.01056 0.92782 1.01204 1.22839 0.92457 0.98986 0.91265 1.67800 1.18347 1.23749 1.08206 1.22769 0.94943 0.86873 0.99796 1.21991 1.02911 0.90266 0.95096 1.98404 1.96879 1.32420 1.74033 1.24345 1.01827 0.95011 1.00580 0.93462 0.79851 0.91380 0.90107 0.76610 0.87073 0.86986 0.83869 0.81947 0.81804 0.90355 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.76 13.70 55.49 0.76 -28.00 16 2 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 3 Si 1.08 25.72 29.92 -169.99 -5.09 20.64 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.34 -9.34 9.97 -15.06 -0.15 -9.49 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.63 5.41 -52.64 -0.28 -17.91 16 10 C 0.17 3.37 4.47 -67.12 -0.30 3.07 16 11 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 12 C -0.16 -2.40 7.58 -25.92 -0.20 -2.60 16 13 C 0.12 1.73 4.24 -67.02 -0.28 1.45 16 14 H 0.11 1.69 7.46 -51.93 -0.39 1.30 16 15 N -0.71 -8.39 5.36 -52.93 -0.28 -8.67 16 16 C 0.52 6.38 7.72 -10.99 -0.08 6.29 16 17 O -0.53 -8.72 15.57 5.56 0.09 -8.63 16 18 C -0.11 -0.96 5.35 -29.04 -0.16 -1.12 16 19 C -0.01 -0.10 4.45 -104.29 -0.46 -0.57 16 20 C -0.15 -1.23 9.78 -39.45 -0.39 -1.62 16 21 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 22 N -0.47 -4.95 10.36 -13.22 -0.14 -5.09 16 23 C 0.11 1.16 10.99 -17.50 -0.19 0.97 16 24 C -0.07 -0.79 6.26 -39.35 -0.25 -1.04 16 25 Cl -0.05 -0.51 27.60 -51.86 -1.43 -1.94 16 26 C -0.18 -3.05 7.69 -25.82 -0.20 -3.25 16 27 H 0.25 7.58 6.77 -40.82 -0.28 7.30 16 28 H 0.37 9.15 6.74 -40.82 -0.28 8.87 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 31 H 0.40 3.68 8.73 -40.82 -0.36 3.32 16 32 H 0.11 0.60 8.04 -51.93 -0.42 0.18 16 33 H 0.11 0.84 7.45 -51.93 -0.39 0.46 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -34.66 342.24 -8.85 -43.52 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.68 Total: 9.54 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.95 Total: -8.61 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.05 Total: -59.67 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.09 Total: 20.64 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.43 Total: -1.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.66 -8.85 -43.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022716708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.598 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds