Wall clock time and date at job start Tue Mar 31 2020 09:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85162 * 25.32541 * 10 9 7 12 12 C 1.53781 * 113.61544 * 156.52457 * 10 9 7 13 13 C 1.53782 * 87.08036 * 139.98034 * 12 10 9 14 14 H 1.09002 * 113.61800 * 89.20186 * 13 12 10 15 15 N 1.46504 * 113.61584 * 220.02140 * 13 12 10 16 16 C 1.34773 * 120.00156 * 204.99931 * 15 13 12 17 17 O 1.21278 * 120.00201 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00099 * 179.97438 * 16 15 13 19 19 C 1.50701 * 109.47212 * 180.02562 * 18 16 15 20 20 C 1.38650 * 120.79541 * 100.00548 * 19 18 16 21 21 C 1.38192 * 119.17546 * 179.97438 * 20 19 18 22 22 N 1.31872 * 120.79635 * 359.97438 * 21 20 19 23 23 C 1.31845 * 121.73967 * 0.02562 * 22 21 20 24 24 C 1.38357 * 120.74438 * 359.73996 * 23 22 21 25 25 Cl 1.73601 * 120.43289 * 180.28947 * 24 23 22 26 26 C 1.53788 * 113.61484 * 254.13346 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09001 * 113.61675 * 254.52741 * 12 10 9 30 30 H 1.08997 * 113.61543 * 25.43518 * 12 10 9 31 31 H 0.97001 * 119.99950 * 24.99427 * 15 13 12 32 32 H 1.09003 * 109.47843 * 300.00591 * 18 16 15 33 33 H 1.09004 * 109.46683 * 60.00107 * 18 16 15 34 34 H 1.08001 * 120.41110 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.59624 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.62549 * 179.97438 * 23 22 21 37 37 H 1.08999 * 113.60639 * 334.56736 * 26 10 9 38 38 H 1.09000 * 113.61378 * 105.46782 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0556 -3.5696 0.4289 12 6 1.2463 -4.8367 0.5585 13 6 1.8608 -5.6901 -0.5635 14 1 2.8043 -6.1609 -0.2872 15 7 0.9144 -6.6275 -1.1733 16 6 1.3662 -7.7467 -1.7730 17 8 2.5563 -7.9781 -1.8075 18 6 0.3927 -8.7113 -2.3997 19 6 1.1481 -9.8705 -2.9970 20 6 1.2431 -11.0786 -2.3232 21 6 1.9436 -12.1196 -2.9023 22 7 2.5171 -11.9744 -4.0808 23 6 2.4482 -10.8409 -4.7508 24 6 1.7601 -9.7562 -4.2368 25 17 1.6682 -8.2700 -5.1292 26 6 2.0334 -4.3823 -1.3574 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.5540 -5.1429 1.5584 30 1 0.1679 -4.7071 0.4676 31 1 -0.0374 -6.4428 -1.1453 32 1 -0.2949 -9.0798 -1.6384 33 1 -0.1704 -8.2023 -3.1820 34 1 0.7754 -11.2044 -1.3579 35 1 2.0222 -13.0634 -2.3832 36 1 2.9311 -10.7595 -5.7134 37 1 1.1705 -4.1281 -1.9729 38 1 2.9757 -4.3221 -1.9019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022716708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:14 Heat of formation + Delta-G solvation = -1.901021 kcal Electronic energy + Delta-G solvation = -22099.637775 eV Core-core repulsion = 18581.741436 eV Total energy + Delta-G solvation = -3517.896339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61485 -40.82756 -39.37661 -37.68998 -36.12773 -34.94118 -34.32389 -32.06065 -31.64200 -29.64416 -26.64182 -26.14441 -24.62105 -24.54716 -23.21526 -21.56395 -20.80736 -19.49440 -18.19693 -18.05964 -17.90225 -17.38249 -16.92902 -16.67456 -16.05213 -15.71631 -15.64240 -15.42773 -14.99696 -14.92886 -14.41438 -13.96049 -13.87917 -13.47140 -13.40614 -13.06171 -12.89007 -12.72236 -12.62460 -12.30751 -12.20801 -12.15211 -11.87632 -11.82706 -11.24203 -11.10717 -10.88429 -10.63581 -10.54151 -10.03990 -9.97923 -9.10986 -8.40623 -5.34485 -0.09964 0.02968 0.99279 1.57865 1.58190 1.67366 1.83832 2.14844 2.66990 2.71475 3.33351 3.36014 3.44168 3.58759 3.62547 3.73606 3.79034 3.87110 3.90247 4.09681 4.19637 4.21137 4.37839 4.50921 4.61744 4.64411 4.77246 4.78552 4.80519 5.04462 5.04873 5.05566 5.29976 5.50165 5.55922 5.62374 6.49299 6.53922 6.79781 7.08116 7.21849 7.98687 8.09243 9.11444 Molecular weight = 309.10amu Principal moments of inertia in cm(-1) A = 0.030156 B = 0.002532 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.274659 B =11057.476220 C =11493.933054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.103 4.103 3 Si 1.125 2.875 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.335 4.335 8 H 0.064 0.936 9 N -0.735 5.735 10 C 0.152 3.848 11 H 0.072 0.928 12 C -0.137 4.137 13 C 0.142 3.858 14 H 0.104 0.896 15 N -0.705 5.705 16 C 0.517 3.483 17 O -0.575 6.575 18 C -0.105 4.105 19 C -0.026 4.026 20 C -0.146 4.146 21 C 0.096 3.904 22 N -0.494 5.494 23 C 0.100 3.900 24 C -0.090 4.090 25 Cl -0.059 7.059 26 C -0.171 4.171 27 H 0.246 0.754 28 H 0.363 0.637 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.415 0.585 32 H 0.151 0.849 33 H 0.123 0.877 34 H 0.176 0.824 35 H 0.194 0.806 36 H 0.173 0.827 37 H 0.070 0.930 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 -25.858 -5.092 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.294 4.294 3 Si 0.950 3.050 4 H -0.218 1.218 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.375 5.375 10 C 0.042 3.958 11 H 0.090 0.910 12 C -0.176 4.176 13 C 0.036 3.964 14 H 0.122 0.878 15 N -0.356 5.356 16 C 0.305 3.695 17 O -0.454 6.454 18 C -0.145 4.145 19 C -0.035 4.035 20 C -0.166 4.166 21 C -0.060 4.060 22 N -0.203 5.203 23 C -0.057 4.057 24 C -0.119 4.119 25 Cl -0.031 7.031 26 C -0.213 4.213 27 H 0.056 0.944 28 H 0.196 0.804 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.252 0.748 32 H 0.169 0.831 33 H 0.141 0.859 34 H 0.194 0.806 35 H 0.210 0.790 36 H 0.190 0.810 37 H 0.089 0.911 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.285 -24.921 -5.538 25.531 hybrid contribution -0.892 -0.390 -0.012 0.974 sum -1.178 -25.311 -5.550 25.939 Atomic orbital electron populations 1.70999 1.07065 1.27982 1.56191 1.27145 0.97163 1.04555 1.00561 0.82655 0.73435 0.71813 0.77096 1.21811 1.20297 1.20698 1.20430 0.92365 0.87243 1.46657 0.91750 1.42488 1.04596 1.01575 1.88873 1.21613 0.95572 0.83941 0.94694 0.90952 1.23640 1.00851 0.94648 0.98503 1.22064 0.93846 0.86926 0.93597 0.87761 1.45853 1.11097 1.21545 1.57068 1.20790 0.89331 0.81875 0.77536 1.90723 1.18696 1.76309 1.59720 1.20827 0.97430 0.92823 1.03383 1.19910 0.95626 0.96056 0.91924 1.22441 1.00252 0.91794 1.02083 1.23432 0.91542 1.00396 0.90662 1.67833 1.19260 1.23881 1.09367 1.22953 0.95286 0.87010 1.00419 1.22152 1.03954 0.89912 0.95868 1.98392 1.97004 1.33213 1.74456 1.24184 1.00903 0.96811 0.99396 0.94387 0.80416 0.89789 0.89076 0.74774 0.83075 0.85947 0.80619 0.78959 0.81036 0.91120 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.17 13.70 21.65 0.30 -59.87 16 2 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 3 Si 1.13 51.81 29.92 68.60 2.05 53.86 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.34 -18.75 9.97 84.03 0.84 -17.92 16 8 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 9 N -0.74 -36.09 5.41 -320.46 -1.73 -37.82 16 10 C 0.15 5.83 4.47 45.52 0.20 6.03 16 11 H 0.07 2.86 8.11 -2.39 -0.02 2.84 16 12 C -0.14 -3.87 7.58 31.12 0.24 -3.64 16 13 C 0.14 3.86 4.24 45.58 0.19 4.05 16 14 H 0.10 3.07 7.46 -2.39 -0.02 3.05 16 15 N -0.70 -14.86 5.36 -439.76 -2.36 -17.22 16 16 C 0.52 11.59 7.72 87.66 0.68 12.27 16 17 O -0.58 -18.09 15.57 -3.02 -0.05 -18.13 16 18 C -0.11 -1.47 5.35 29.10 0.16 -1.32 16 19 C -0.03 -0.45 4.45 -19.65 -0.09 -0.54 16 20 C -0.15 -1.93 9.78 22.36 0.22 -1.71 16 21 C 0.10 1.39 11.18 84.68 0.95 2.33 16 22 N -0.49 -9.81 10.36 -195.74 -2.03 -11.84 16 23 C 0.10 2.01 10.99 84.72 0.93 2.94 16 24 C -0.09 -1.85 6.26 22.42 0.14 -1.71 16 25 Cl -0.06 -1.30 27.60 -2.72 -0.08 -1.37 16 26 C -0.17 -5.88 7.69 31.18 0.24 -5.64 16 27 H 0.25 14.94 6.77 -92.71 -0.63 14.31 16 28 H 0.36 18.25 6.74 -92.71 -0.62 17.62 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.09 2.43 8.09 -2.39 -0.02 2.41 16 31 H 0.42 6.34 8.73 -92.71 -0.81 5.53 16 32 H 0.15 0.89 8.04 -2.39 -0.02 0.87 16 33 H 0.12 1.50 7.45 -2.39 -0.02 1.48 16 34 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.08 342.24 1.08 -75.00 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.19 Total: 27.71 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.16 Total: -10.32 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -5.82 Total: -126.75 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.05 Total: -18.13 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.86 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.37 kcal Total: -76.08 1.08 -75.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022716708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.097 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds