Wall clock time and date at job start Tue Mar 31 2020 09:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38238 * 120.00015 * 2 1 4 4 C 1.38233 * 119.99851 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99977 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47255 * 340.00366 * 6 5 4 8 8 O 1.42902 * 109.47208 * 219.99940 * 6 5 4 9 9 C 1.53004 * 109.46894 * 100.00364 * 6 5 4 10 10 H 1.08995 * 109.47216 * 299.99899 * 9 6 5 11 11 C 1.52999 * 109.47083 * 179.97438 * 9 6 5 12 12 N 1.46498 * 109.47065 * 59.99788 * 9 6 5 13 13 C 1.34777 * 119.99828 * 204.72115 * 12 9 6 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 9 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 9 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46850 * 90.00589 * 21 19 17 23 23 H 1.48498 * 109.47329 * 210.00016 * 21 19 17 24 24 H 1.48499 * 109.47220 * 330.01003 * 21 19 17 25 25 C 1.38238 * 120.00261 * 0.25402 * 5 4 3 26 26 C 1.38232 * 120.00019 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47397 * 89.99479 * 1 2 3 28 28 H 1.09003 * 109.47250 * 209.99400 * 1 2 3 29 29 H 1.08997 * 109.47128 * 329.99608 * 1 2 3 30 30 H 1.08000 * 120.00119 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.00019 * 179.97438 * 4 3 2 32 32 H 0.96694 * 114.00140 * 300.00206 * 8 6 5 33 33 H 1.09003 * 109.47054 * 59.99725 * 11 9 6 34 34 H 1.08996 * 109.47245 * 179.97438 * 11 9 6 35 35 H 1.08995 * 109.47098 * 300.00077 * 11 9 6 36 36 H 0.97001 * 120.00384 * 25.00562 * 12 9 6 37 37 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 38 38 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 39 39 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.00494 * 179.72721 * 25 5 4 41 41 H 1.08003 * 120.00321 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 1 6.1420 0.9656 -0.3509 8 8 6.2550 -1.0321 -0.8655 9 6 6.2886 -0.2506 1.4212 10 1 5.9253 0.5366 2.0817 11 6 7.8186 -0.2512 1.4211 12 7 5.8002 -1.5485 1.8935 13 6 5.6768 -1.7817 3.2152 14 8 5.9652 -0.9153 4.0134 15 6 5.1803 -3.1190 3.7013 16 16 5.1250 -3.1207 5.5104 17 6 4.5273 -4.7534 5.7966 18 1 4.3176 -5.4058 4.9618 19 6 4.3270 -5.2014 7.0950 20 7 4.5830 -4.4065 8.1124 21 14 3.6927 -6.9320 7.3984 22 1 4.8409 -7.8662 7.5179 23 1 2.9021 -6.9562 8.6552 24 1 2.8310 -7.3496 6.2633 25 6 3.5805 -1.1972 -0.0053 26 6 2.1981 -1.1971 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5139 30 1 1.6581 2.1325 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 5.9697 -1.9207 -0.6125 33 1 8.1823 0.7143 1.0695 34 1 8.1819 -0.4293 2.4332 35 1 8.1816 -1.0386 0.7606 36 1 5.5696 -2.2415 1.2551 37 1 4.1804 -3.3004 3.3073 38 1 5.8542 -3.9036 3.3572 39 1 4.4426 -4.7195 9.0197 40 1 4.1204 -2.1325 -0.0098 41 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804469607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:45 Heat of formation + Delta-G solvation = -73.523588 kcal Electronic energy + Delta-G solvation = -22963.516813 eV Core-core repulsion = 19548.098736 eV Total energy + Delta-G solvation = -3415.418077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47625 -39.05319 -37.54096 -34.39951 -33.03992 -32.43812 -31.51026 -30.97059 -28.62158 -28.20852 -25.49984 -25.02221 -23.01549 -21.98708 -20.89512 -20.26412 -18.15884 -17.61410 -16.66427 -16.60980 -15.65533 -15.45927 -14.99222 -14.81787 -14.78111 -14.35645 -14.12390 -13.91549 -13.73457 -13.59010 -13.23686 -13.09532 -12.67102 -12.40850 -12.35977 -12.23711 -11.97701 -11.82583 -11.64158 -11.22251 -11.07345 -11.05371 -11.02008 -10.77216 -10.34358 -9.82457 -9.41967 -9.13536 -9.07559 -8.92733 -8.67732 -8.24732 -6.50865 -6.22665 -3.93171 1.10427 1.23608 2.97849 3.08299 3.21381 3.26397 3.30079 3.50098 3.66142 4.11803 4.19387 4.29638 4.54994 4.61194 4.74930 4.78187 4.99175 5.10444 5.12560 5.21431 5.24646 5.29534 5.37673 5.39351 5.51619 5.57893 5.60269 5.71038 5.86275 5.86955 5.90018 5.98408 6.11101 6.19840 6.23506 6.32917 6.42132 6.58177 6.80906 7.20425 7.58184 7.61718 8.34050 8.58645 9.22696 10.84787 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.003671 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.576393 B = 7625.485663 C = 8882.691203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.118 4.118 4 C -0.105 4.105 5 C -0.120 4.120 6 C 0.143 3.857 7 H 0.119 0.881 8 O -0.548 6.548 9 C 0.117 3.883 10 H 0.097 0.903 11 C -0.159 4.159 12 N -0.732 5.732 13 C 0.536 3.464 14 O -0.514 6.514 15 C -0.154 4.154 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.101 4.101 26 C -0.114 4.114 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.370 0.630 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.389 0.611 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.115 0.885 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 8.796 -20.624 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.120 4.120 6 C 0.083 3.917 7 H 0.137 0.863 8 O -0.353 6.353 9 C 0.012 3.988 10 H 0.115 0.885 11 C -0.217 4.217 12 N -0.389 5.389 13 C 0.322 3.678 14 O -0.388 6.388 15 C -0.304 4.304 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.119 4.119 26 C -0.132 4.132 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.218 0.782 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.224 0.776 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.980 10.787 -19.386 22.274 hybrid contribution -1.154 -2.919 -0.634 3.202 sum -3.134 7.868 -20.020 21.738 Atomic orbital electron populations 1.20809 0.91157 1.03093 1.02192 1.19955 0.96201 0.93209 0.99112 1.21010 0.94075 0.97611 1.00925 1.20929 0.94290 0.97269 0.99810 1.20404 0.96051 0.93984 1.01586 1.21197 0.88560 0.92843 0.89070 0.86317 1.86642 1.76447 1.18077 1.54174 1.21568 0.94884 0.87643 0.94732 0.88512 1.22097 0.94355 1.02277 1.03002 1.46047 1.69699 1.15685 1.07436 1.20267 0.76652 0.89430 0.81413 1.90700 1.48037 1.46157 1.53882 1.23533 1.03593 0.96171 1.07131 1.85406 1.86491 1.19753 0.91535 1.22865 1.51156 0.99275 0.95113 0.90967 1.24985 0.95072 0.98461 0.94998 1.70016 1.45585 1.35774 0.98908 0.86178 0.78843 0.82637 0.77905 1.20253 1.20740 1.19702 1.20763 0.94348 0.96952 0.99872 1.21015 0.94005 0.97786 1.00418 0.91236 0.91309 0.91478 0.86006 0.85897 0.78167 0.91862 0.91561 0.91843 0.77617 0.89345 0.89281 0.92177 0.86701 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.01 36.00 0.36 -0.56 16 2 C -0.08 -0.86 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 4 C -0.10 -1.05 9.67 -39.58 -0.38 -1.44 16 5 C -0.12 -1.24 4.88 -104.62 -0.51 -1.75 16 6 C 0.14 1.35 3.09 -27.88 -0.09 1.26 16 7 H 0.12 0.98 8.00 -51.93 -0.42 0.56 16 8 O -0.55 -5.12 12.51 -35.23 -0.44 -5.57 16 9 C 0.12 1.36 2.40 -67.93 -0.16 1.20 16 10 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 11 C -0.16 -1.79 9.33 37.16 0.35 -1.44 16 12 N -0.73 -9.42 4.18 -53.81 -0.23 -9.64 16 13 C 0.54 9.81 7.81 -10.98 -0.09 9.72 16 14 O -0.51 -11.51 15.53 5.55 0.09 -11.42 16 15 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 21 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 C -0.10 -1.03 8.32 -39.58 -0.33 -1.36 16 26 C -0.11 -1.19 9.70 -39.58 -0.38 -1.58 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.12 0.98 8.04 -52.48 -0.42 0.56 16 32 H 0.37 2.61 6.12 45.56 0.28 2.89 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 36 H 0.39 3.87 5.47 -40.82 -0.22 3.64 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.12 0.93 5.50 -52.49 -0.29 0.64 16 41 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -35.05 356.34 -8.73 -43.79 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.21 Total: 5.07 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.81 Total: -14.71 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.51 Total: -35.03 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.35 Total: -16.99 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.05 -8.73 -43.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804469607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.737 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds