Wall clock time and date at job start Tue Mar 31 2020 09:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 110.88363 * 2 1 4 4 C 1.54493 * 110.90666 * 236.44825 * 2 1 3 5 5 C 1.51373 * 105.21339 * 215.53999 * 4 2 1 6 6 C 1.38499 * 130.38688 * 197.10210 * 5 4 2 7 7 C 1.38099 * 120.21502 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.93333 * 0.02562 * 7 6 5 9 9 C 1.38103 * 119.93742 * 359.97438 * 8 7 6 10 10 C 1.38211 * 109.75853 * 17.13258 * 5 4 2 11 11 C 1.51370 * 109.76158 * 359.97438 * 10 5 4 12 12 H 1.09002 * 110.30562 * 223.89759 * 11 10 5 13 13 N 1.46500 * 110.30061 * 101.84264 * 11 10 5 14 14 S 1.65600 * 119.99676 * 97.77894 * 13 11 10 15 15 O 1.42107 * 104.27438 * 181.07110 * 14 13 11 16 16 O 1.42099 * 104.27782 * 308.92534 * 14 13 11 17 17 C 1.81396 * 104.44988 * 65.00040 * 14 13 11 18 18 C 1.53002 * 109.46953 * 179.97438 * 17 14 13 19 19 C 1.50702 * 109.47082 * 179.97438 * 18 17 14 20 20 H 1.07994 * 119.99970 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00184 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99811 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00231 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46735 * 90.00384 * 23 21 19 25 25 H 1.48487 * 109.47368 * 210.00501 * 23 21 19 26 26 H 1.48505 * 109.47031 * 330.01008 * 23 21 19 27 27 H 1.09000 * 109.47114 * 296.48610 * 1 2 3 28 28 H 1.08999 * 109.47187 * 56.49351 * 1 2 3 29 29 H 1.09005 * 109.46985 * 176.48953 * 1 2 3 30 30 H 1.08999 * 110.34034 * 96.57637 * 4 2 1 31 31 H 1.08994 * 110.31204 * 334.49363 * 4 2 1 32 32 H 1.08000 * 119.89041 * 0.04285 * 6 5 4 33 33 H 1.07997 * 120.03349 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.03151 * 179.97438 * 8 7 6 35 35 H 1.07995 * 119.89712 * 180.02562 * 9 8 7 36 36 H 0.96994 * 120.00164 * 277.77328 * 13 11 10 37 37 H 1.09004 * 109.47263 * 299.99451 * 17 14 13 38 38 H 1.08996 * 109.47777 * 59.99967 * 17 14 13 39 39 H 1.08999 * 109.47230 * 299.99719 * 18 17 14 40 40 H 1.08999 * 109.47078 * 59.99933 * 18 17 14 41 41 H 0.96993 * 120.00171 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0814 -0.7977 -1.2028 5 6 3.3334 -1.4759 -0.6893 6 6 4.3902 -2.0487 -1.3772 7 6 5.4416 -2.6188 -0.6867 8 6 5.4398 -2.6186 0.6958 9 6 4.3869 -2.0480 1.3836 10 6 3.3318 -1.4754 0.6928 11 6 2.0788 -0.7963 1.2029 12 1 2.3216 -0.1219 2.0241 13 7 1.1006 -1.7957 1.6393 14 16 0.9752 -2.1860 3.2437 15 8 -0.0351 -3.1845 3.2835 16 8 2.3088 -2.4771 3.6389 17 6 0.3948 -0.6612 4.0365 18 6 0.2372 -0.8962 5.5401 19 6 -0.2445 0.3708 6.1988 20 1 -0.4209 1.2550 5.6044 21 6 -0.4609 0.4008 7.5602 22 7 -0.2465 -0.6762 8.2839 23 14 -1.0585 1.9710 8.3766 24 1 -2.5434 1.9872 8.3909 25 1 -0.5494 2.0291 9.7702 26 1 -0.5581 3.1451 7.6173 27 1 -0.3633 0.4583 0.9198 28 1 -0.3633 0.5673 -0.8569 29 1 -0.3633 -1.0258 -0.0629 30 1 2.3259 -0.1240 -2.0241 31 1 1.3546 -1.5418 -1.5284 32 1 4.3922 -2.0493 -2.4572 33 1 6.2643 -3.0642 -1.2261 34 1 6.2609 -3.0644 1.2374 35 1 4.3864 -2.0479 2.4636 36 1 0.5264 -2.2288 0.9885 37 1 1.1196 0.1351 3.8669 38 1 -0.5668 -0.3738 3.6113 39 1 -0.4878 -1.6924 5.7093 40 1 1.1986 -1.1837 5.9656 41 1 -0.3984 -0.6550 9.2417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111367607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:51 Heat of formation + Delta-G solvation = -83.169250 kcal Electronic energy + Delta-G solvation = -23683.906466 eV Core-core repulsion = 20268.070122 eV Total energy + Delta-G solvation = -3415.836344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30815 -38.13890 -37.82285 -36.98441 -35.89699 -34.15564 -33.13253 -31.79372 -31.56466 -27.60509 -27.39657 -26.90156 -23.63103 -22.80645 -21.86297 -21.12509 -20.34011 -19.17178 -18.38177 -17.81155 -17.05463 -16.72680 -16.54523 -16.32167 -16.04960 -15.95077 -15.33481 -15.07611 -14.53353 -14.40529 -14.05333 -14.01188 -13.72884 -13.52156 -13.22576 -13.14973 -13.02863 -12.92824 -12.89665 -12.77968 -12.33415 -12.25946 -12.13724 -12.05204 -11.87453 -11.73117 -11.68471 -11.51321 -11.14940 -10.64662 -10.44675 -9.71105 -9.48023 -8.25863 -6.39933 -0.69301 0.42730 0.52276 1.41220 1.43052 1.54145 1.87972 2.38252 2.80677 2.89343 3.07757 3.27273 3.36640 3.63789 3.93110 3.96091 4.05874 4.11961 4.22948 4.26013 4.31276 4.40946 4.65620 4.67537 4.74074 4.82192 4.90111 4.93475 4.96952 5.10594 5.20979 5.25239 5.27011 5.27983 5.42025 5.52159 5.59233 5.67293 5.68524 5.76754 6.05801 6.10510 6.17281 6.73940 7.30370 8.86518 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.003741 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.946252 B = 7481.913654 C = 7863.246588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.109 0.891 4 C -0.074 4.074 5 C -0.090 4.090 6 C -0.121 4.121 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.112 4.112 10 C -0.137 4.137 11 C 0.183 3.817 12 H 0.094 0.906 13 N -1.093 6.093 14 S 2.612 3.388 15 O -1.002 7.002 16 O -0.990 6.990 17 C -0.585 4.585 18 C 0.021 3.979 19 C -0.537 4.537 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.256 1.256 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.423 0.577 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 2.623 -23.831 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.127 0.873 4 C -0.111 4.111 5 C -0.091 4.091 6 C -0.139 4.139 7 C -0.132 4.132 8 C -0.160 4.160 9 C -0.130 4.130 10 C -0.139 4.139 11 C 0.076 3.924 12 H 0.112 0.888 13 N -0.853 5.853 14 S 2.709 3.291 15 O -0.992 6.992 16 O -0.980 6.980 17 C -0.718 4.718 18 C -0.018 4.018 19 C -0.576 4.576 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.180 1.180 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.128 0.872 36 H 0.261 0.739 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.022 0.978 40 H 0.024 0.976 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.750 1.759 -23.168 24.195 hybrid contribution -0.450 0.498 1.032 1.231 sum 6.301 2.258 -22.136 23.126 Atomic orbital electron populations 1.21808 0.92781 1.02658 1.03174 1.22176 0.97232 0.99433 0.91864 0.87313 1.21248 0.92826 0.98830 0.98204 1.20938 0.96709 0.97950 0.93498 1.20945 0.93203 0.98821 1.00944 1.21403 0.99138 0.98900 0.93776 1.21309 0.98698 1.00599 0.95418 1.21056 0.94070 0.97452 1.00460 1.20994 0.95980 1.01400 0.95478 1.20405 0.84554 0.88071 0.99371 0.88814 1.55414 1.49299 1.55495 1.25138 1.04686 0.73577 0.76885 0.73906 1.93499 1.61762 1.57731 1.86242 1.93498 1.37927 1.83902 1.82643 1.30326 1.13448 1.20137 1.07839 1.18810 0.96464 0.98257 0.88258 1.21519 1.45250 0.97630 0.93234 0.90429 1.26129 0.95441 1.00338 0.98378 1.70106 1.49605 1.30660 1.07119 0.85311 0.78642 0.78850 0.77460 1.19596 1.20964 1.17993 0.92112 0.90225 0.92097 0.88201 0.89085 0.83647 0.83404 0.85021 0.87177 0.73865 0.84022 0.83667 0.97750 0.97596 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.54 71.98 0.61 -1.32 16 2 C -0.09 -1.29 3.62 -9.83 -0.04 -1.33 16 3 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.07 -1.01 6.33 30.57 0.19 -0.82 16 5 C -0.09 -1.79 6.14 -19.59 -0.12 -1.91 16 6 C -0.12 -2.16 10.04 22.30 0.22 -1.93 16 7 C -0.11 -2.16 10.05 22.24 0.22 -1.93 16 8 C -0.14 -3.39 10.05 22.24 0.22 -3.16 16 9 C -0.11 -3.23 9.75 22.30 0.22 -3.01 16 10 C -0.14 -3.46 5.77 -19.59 -0.11 -3.57 16 11 C 0.18 4.12 3.14 44.91 0.14 4.26 16 12 H 0.09 2.10 7.24 -2.39 -0.02 2.09 16 13 N -1.09 -27.61 4.63 -169.72 -0.79 -28.39 16 14 S 2.61 94.21 5.39 -56.49 -0.30 93.90 16 15 O -1.00 -42.77 18.08 -127.65 -2.31 -45.08 16 16 O -0.99 -41.54 16.37 -127.65 -2.09 -43.63 16 17 C -0.59 -21.79 5.91 71.98 0.43 -21.36 16 18 C 0.02 1.10 4.98 29.85 0.15 1.25 16 19 C -0.54 -29.60 9.11 25.60 0.23 -29.36 16 20 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 21 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 22 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 23 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.79 6.38 -2.38 -0.02 0.78 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.10 7.84 -2.39 -0.02 1.08 16 32 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.11 3.69 6.90 -2.91 -0.02 3.67 16 36 H 0.42 8.92 7.12 -96.75 -0.69 8.23 16 37 H 0.14 4.55 7.48 -2.39 -0.02 4.53 16 38 H 0.15 4.66 8.14 -2.39 -0.02 4.64 16 39 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -77.35 347.67 0.00 -77.35 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.34 Total: 21.57 kcal Atomic # 6 Polarization: -66.84 SS G_CDS: 2.84 Total: -64.00 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -0.50 Total: -85.22 kcal Atomic # 8 Polarization: -84.31 SS G_CDS: -4.40 Total: -88.71 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 94.21 SS G_CDS: -0.30 Total: 93.90 kcal Total: -77.35 0.00 -77.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111367607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.824 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds