Wall clock time and date at job start Tue Mar 31 2020 09:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47243 * 2 1 4 4 C 1.46500 * 120.00260 * 274.15389 * 3 2 1 5 5 C 1.53001 * 109.47158 * 270.00070 * 4 3 2 6 6 C 1.53002 * 109.46952 * 180.02562 * 5 4 3 7 7 O 1.42905 * 109.46632 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99759 * 94.14841 * 3 2 1 9 9 O 1.21604 * 119.99686 * 175.22880 * 8 3 2 10 10 C 1.47426 * 119.99899 * 355.23388 * 8 3 2 11 11 C 1.39678 * 120.21402 * 60.44963 * 10 8 3 12 12 C 1.37806 * 119.93598 * 179.97438 * 11 10 8 13 13 C 1.38659 * 120.38262 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43866 * 0.02562 * 13 12 11 15 15 C 1.39113 * 120.04841 * 359.97438 * 14 13 12 16 16 S 1.76204 * 120.18894 * 180.02562 * 15 14 13 17 17 C 1.76197 * 99.99861 * 351.92402 * 16 15 14 18 18 H 1.08003 * 120.00598 * 4.85835 * 17 16 15 19 19 C 1.38804 * 120.00312 * 184.86300 * 17 16 15 20 20 N 1.31562 * 119.99671 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00418 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47327 * 119.99930 * 21 19 17 24 24 H 1.48508 * 109.47102 * 239.99572 * 21 19 17 25 25 H 1.08998 * 109.47045 * 59.99614 * 1 2 3 26 26 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46671 * 300.00010 * 1 2 3 28 28 H 1.09001 * 109.46641 * 240.00498 * 2 1 3 29 29 H 1.08998 * 109.47045 * 120.00386 * 2 1 3 30 30 H 1.09008 * 109.47208 * 29.99731 * 4 3 2 31 31 H 1.08995 * 109.47367 * 149.99761 * 4 3 2 32 32 H 1.08995 * 109.46557 * 300.00050 * 5 4 3 33 33 H 1.09003 * 109.47142 * 59.99920 * 5 4 3 34 34 H 1.09006 * 109.46750 * 299.99505 * 6 5 4 35 35 H 1.08995 * 109.47529 * 59.99718 * 6 5 4 36 36 H 0.96696 * 113.99855 * 180.02562 * 7 6 5 37 37 H 1.07997 * 120.03549 * 0.27733 * 11 10 8 38 38 H 1.08005 * 119.80935 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.78091 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.97322 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00091 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1760 2.1025 -1.2654 5 6 3.5873 1.8740 -1.8104 6 6 3.7520 2.6278 -3.1316 7 8 5.0699 2.4139 -3.6408 8 6 2.3227 1.9884 1.1642 9 8 2.8095 3.1027 1.1597 10 6 2.0654 1.3015 2.4430 11 6 2.6893 0.0840 2.7249 12 6 2.4450 -0.5529 3.9223 13 6 1.5817 0.0075 4.8514 14 6 0.9565 1.2084 4.5888 15 6 1.1900 1.8668 3.3858 16 16 0.3936 3.4017 3.0467 17 6 -0.7166 3.4786 4.4127 18 1 -0.6778 2.7231 5.1835 19 6 -1.6413 4.5103 4.4983 20 7 -1.6883 5.4310 3.5597 21 14 -2.8179 4.5923 5.9469 22 1 -2.5623 3.4476 6.8576 23 1 -2.6104 5.8660 6.6817 24 1 -4.2168 4.5283 5.4525 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.4446 1.7363 -1.9859 31 1 2.0192 3.1681 -1.0982 32 1 4.3186 2.2402 -1.0899 33 1 3.7440 0.8083 -1.9776 34 1 3.0205 2.2619 -3.8522 35 1 3.5953 3.6934 -2.9640 36 1 5.2457 2.8637 -4.4786 37 1 3.3662 -0.3554 2.0073 38 1 2.9283 -1.4944 4.1380 39 1 1.3976 -0.4998 5.7870 40 1 0.2858 1.6383 5.3180 41 1 -2.3342 6.1521 3.6197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160479708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:37 Heat of formation + Delta-G solvation = -62.573162 kcal Electronic energy + Delta-G solvation = -23323.703349 eV Core-core repulsion = 19908.760118 eV Total energy + Delta-G solvation = -3414.943231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.91956 -37.77291 -37.08811 -35.74173 -32.86589 -32.72224 -30.57808 -30.38798 -29.71839 -25.91955 -25.69644 -23.59066 -22.62641 -21.97814 -21.44999 -19.31051 -17.92018 -17.44562 -16.95457 -16.28642 -16.05603 -15.53763 -15.15998 -15.00293 -14.53662 -13.92774 -13.77655 -13.72859 -13.36098 -13.10266 -13.01390 -12.97320 -12.43006 -12.16274 -12.07585 -11.77979 -11.63490 -11.25161 -11.24135 -11.19717 -11.02606 -10.94896 -10.87519 -10.35980 -10.08959 -9.82959 -9.59487 -9.42053 -8.77299 -8.57729 -8.47878 -8.24588 -6.60543 -6.52280 -4.23713 1.67305 1.95605 3.05097 3.08647 3.13130 3.17572 3.26369 3.35571 3.98888 4.16819 4.31447 4.79712 4.90132 5.01946 5.04786 5.08178 5.14658 5.23504 5.35127 5.38393 5.41223 5.55491 5.57476 5.58920 5.68803 5.83240 5.91554 6.01981 6.09943 6.10799 6.23034 6.33039 6.45249 6.54293 6.80320 6.84851 6.98417 7.09449 7.40323 7.46074 7.54358 7.69188 8.11954 8.62561 8.94946 10.53834 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.004320 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.565492 B = 6479.607012 C = 7544.297396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 N -0.610 5.610 4 C 0.121 3.879 5 C -0.135 4.135 6 C 0.079 3.921 7 O -0.576 6.576 8 C 0.574 3.426 9 O -0.519 6.519 10 C -0.153 4.153 11 C -0.073 4.073 12 C -0.174 4.174 13 C -0.083 4.083 14 C -0.148 4.148 15 C -0.048 4.048 16 S 0.090 5.910 17 C -0.564 4.564 18 H 0.095 0.905 19 C 0.080 3.920 20 N -0.860 5.860 21 Si 0.924 3.076 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.277 1.277 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.378 0.622 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.139 0.861 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.510 -11.046 -9.591 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.344 5.344 4 C -0.002 4.002 5 C -0.174 4.174 6 C 0.001 3.999 7 O -0.381 6.381 8 C 0.362 3.638 9 O -0.394 6.394 10 C -0.167 4.167 11 C -0.093 4.093 12 C -0.198 4.198 13 C -0.105 4.105 14 C -0.174 4.174 15 C -0.167 4.167 16 S 0.350 5.650 17 C -0.711 4.711 18 H 0.112 0.888 19 C -0.131 4.131 20 N -0.493 5.493 21 Si 0.749 3.251 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.224 0.776 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.676 -9.496 -10.047 14.944 hybrid contribution -1.028 -0.549 1.341 1.777 sum 4.648 -10.045 -8.705 14.081 Atomic orbital electron populations 1.22171 0.95741 1.01867 1.03115 1.21755 0.94920 0.82450 1.03259 1.47831 1.66503 1.14488 1.05597 1.21217 0.95164 0.98800 0.85011 1.21888 0.98555 1.00909 0.96040 1.22093 0.83600 0.99162 0.95084 1.86483 1.32432 1.76223 1.42957 1.18326 0.76790 0.85143 0.83501 1.90784 1.42326 1.19151 1.87147 1.19139 1.05102 0.97408 0.95039 1.20808 0.98311 0.93183 0.97017 1.20667 1.02916 1.01067 0.95178 1.21068 0.95808 0.95253 0.98323 1.21418 1.02472 0.96185 0.97289 1.22808 0.97752 1.01042 0.95052 1.83976 1.36754 1.11819 1.32459 1.23551 1.21202 1.15674 1.10694 0.88762 1.25113 0.96618 0.94205 0.97152 1.69984 1.34713 1.12236 1.32382 0.86020 0.79646 0.78660 0.80758 1.19100 1.20197 1.20224 0.92703 0.91944 0.91386 0.91105 0.89042 0.90659 0.89550 0.90592 0.91403 0.93683 0.93213 0.77583 0.86694 0.86881 0.86914 0.84354 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.10 1.23 5.95 -4.04 -0.02 1.20 16 3 N -0.61 -9.48 2.47 -174.95 -0.43 -9.91 16 4 C 0.12 1.62 5.39 -4.04 -0.02 1.60 16 5 C -0.14 -1.68 5.91 -26.73 -0.16 -1.84 16 6 C 0.08 0.81 7.05 37.16 0.26 1.08 16 7 O -0.58 -6.21 13.66 -35.23 -0.48 -6.69 16 8 C 0.57 11.38 6.33 -12.52 -0.08 11.30 16 9 O -0.52 -12.14 16.06 5.27 0.08 -12.05 16 10 C -0.15 -3.03 4.97 -104.75 -0.52 -3.55 16 11 C -0.07 -1.18 7.59 -39.20 -0.30 -1.48 16 12 C -0.17 -2.65 10.02 -39.58 -0.40 -3.04 16 13 C -0.08 -1.40 10.03 -39.55 -0.40 -1.79 16 14 C -0.15 -3.04 9.25 -39.38 -0.36 -3.40 16 15 C -0.05 -1.09 6.14 -38.39 -0.24 -1.32 16 16 S 0.09 2.37 20.18 -107.50 -2.17 0.20 16 17 C -0.56 -15.29 9.08 30.94 0.28 -15.01 16 18 H 0.09 2.42 4.86 -52.48 -0.25 2.16 16 19 C 0.08 2.15 5.49 -17.46 -0.10 2.06 16 20 N -0.86 -24.43 13.22 55.49 0.73 -23.70 16 21 Si 0.92 20.39 29.55 -169.99 -5.02 15.37 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.09 1.15 4.31 -51.93 -0.22 0.92 16 30 H 0.08 0.81 8.07 -51.92 -0.42 0.39 16 31 H 0.09 1.34 7.49 -51.93 -0.39 0.95 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.38 2.18 9.12 45.56 0.42 2.60 16 37 H 0.12 1.55 7.36 -52.49 -0.39 1.16 16 38 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 40 H 0.14 2.96 4.98 -52.49 -0.26 2.70 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -33.12 355.61 -8.48 -41.59 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.88 Total: 5.82 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.67 Total: -15.99 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.30 Total: -33.61 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.40 Total: -18.74 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.17 Total: 0.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.12 -8.48 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160479708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.979 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds