Wall clock time and date at job start Tue Mar 31 2020 10:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 107.16511 * 2 1 4 4 O 1.42098 * 113.53960 * 233.80525 * 2 1 3 5 5 N 1.49350 * 107.52156 * 115.33981 * 2 1 3 6 6 C 1.32485 * 119.99681 * 180.02562 * 5 2 1 7 7 C 1.41877 * 120.25191 * 180.02562 * 6 5 2 8 8 C 1.36085 * 119.72866 * 180.02562 * 7 6 5 9 9 C 1.39704 * 120.26516 * 359.97438 * 8 7 6 10 10 O 1.35533 * 119.74316 * 180.02562 * 9 8 7 11 11 C 1.42899 * 116.99895 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46822 * 179.97438 * 11 10 9 13 13 C 1.50697 * 115.54965 * 294.88579 * 12 11 10 14 14 H 1.08004 * 120.00330 * 95.16920 * 13 12 11 15 15 C 1.37878 * 119.99954 * 274.89457 * 13 12 11 16 16 N 1.31518 * 119.99655 * 6.38444 * 15 13 12 17 17 Si 1.86799 * 120.00167 * 186.38851 * 15 13 12 18 18 H 1.48500 * 109.47073 * 59.99762 * 17 15 13 19 19 H 1.48499 * 109.47234 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46972 * 299.99770 * 17 15 13 21 21 C 1.53000 * 117.49852 * 80.55233 * 12 11 10 22 22 C 1.52997 * 117.49984 * 149.21078 * 12 11 10 23 23 C 1.39708 * 120.52054 * 0.27422 * 9 8 7 24 24 C 1.36093 * 120.26056 * 359.44033 * 23 9 8 25 25 H 1.09007 * 109.46875 * 304.65975 * 1 2 3 26 26 H 1.08990 * 109.47203 * 64.65743 * 1 2 3 27 27 H 1.08994 * 109.46968 * 184.66174 * 1 2 3 28 28 H 1.09003 * 109.46799 * 173.80188 * 3 2 1 29 29 H 1.08995 * 109.47531 * 293.80296 * 3 2 1 30 30 H 1.09000 * 109.47417 * 53.80541 * 3 2 1 31 31 H 1.07999 * 120.13492 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.86437 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.47335 * 60.00210 * 11 10 9 34 34 H 1.08998 * 109.47012 * 299.99125 * 11 10 9 35 35 H 0.96999 * 119.99347 * 180.02562 * 16 15 13 36 36 H 1.08997 * 117.49796 * 215.00685 * 21 12 11 37 37 H 1.09004 * 117.50078 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.49765 * 359.97438 * 22 12 11 39 39 H 1.08996 * 117.49707 * 144.97413 * 22 12 11 40 40 H 1.07999 * 119.87375 * 179.70862 * 23 9 8 41 41 H 1.08000 * 120.13085 * 180.27809 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.3494 1.7332 0.0000 4 8 2.3816 -0.7693 -1.0513 5 7 2.2637 -0.6095 1.2872 6 6 3.5573 -0.7316 1.5461 7 6 3.9904 -1.3103 2.7669 8 6 5.3218 -1.4299 3.0220 9 6 6.2605 -0.9861 2.0874 10 8 7.5838 -1.1109 2.3522 11 6 8.4923 -0.6384 1.3555 12 6 9.9300 -0.8613 1.8291 13 6 10.3441 -0.0714 3.0438 14 1 10.2804 -0.5173 4.0254 15 6 10.8096 1.2186 2.9015 16 7 10.7749 1.8041 1.7243 17 14 11.4896 2.1347 4.3806 18 1 12.6521 1.3925 4.9310 19 1 11.9208 3.4938 3.9657 20 1 10.4358 2.2463 5.4210 21 6 10.5186 -2.2639 1.6641 22 6 10.9932 -1.1231 0.7605 23 6 5.8459 -0.4099 0.8841 24 6 4.5199 -0.2851 0.6044 25 1 -0.3633 0.5845 0.8454 26 1 -0.3633 0.4398 -0.9287 27 1 -0.3633 -1.0242 0.0835 28 1 3.4328 1.7788 0.1110 29 1 2.0604 2.2028 -0.9402 30 1 1.8768 2.2595 0.8293 31 1 3.2665 -1.6537 3.4910 32 1 5.6540 -1.8698 3.9508 33 1 8.3263 0.4258 1.1878 34 1 8.3271 -1.1829 0.4258 35 1 11.1027 2.7115 1.6242 36 1 11.2053 -2.6152 2.4342 37 1 9.8818 -3.0277 1.2178 38 1 10.6683 -1.1370 -0.2799 39 1 11.9920 -0.7237 0.9359 40 1 6.5806 -0.0661 0.1710 41 1 4.2018 0.1566 -0.3284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882999708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:45 Heat of formation + Delta-G solvation = 38.700488 kcal Electronic energy + Delta-G solvation = -23055.735194 eV Core-core repulsion = 19645.183518 eV Total energy + Delta-G solvation = -3410.551676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.49081 -37.74811 -36.59563 -35.94610 -33.86104 -31.89188 -30.90912 -30.41796 -29.35706 -27.69666 -26.10186 -25.13675 -22.45267 -21.54155 -21.03696 -19.08896 -18.71246 -17.54622 -16.98545 -16.54710 -16.10700 -15.86552 -14.84348 -14.79858 -14.38822 -14.21891 -14.01015 -13.83955 -13.69752 -13.63521 -13.35494 -12.91610 -12.83947 -12.64032 -12.41298 -12.17422 -11.70923 -11.44995 -11.38320 -11.01294 -10.92200 -10.71366 -10.49587 -10.42654 -10.17177 -9.56499 -9.42064 -9.40366 -8.77561 -8.62880 -8.39648 -8.12251 -6.56915 -6.01208 -4.04763 -0.84224 1.83761 1.93297 2.36146 2.97799 3.35388 3.38701 3.42829 3.59588 4.12774 4.20354 4.22519 4.42569 4.45500 4.58021 4.67703 4.95532 5.09607 5.26674 5.30833 5.42764 5.52600 5.69947 5.88796 5.98780 6.10150 6.29273 6.37620 6.40077 6.55171 6.66136 6.75938 6.77872 6.82915 6.98261 7.08839 7.16437 7.44399 7.50484 7.62871 7.92841 8.40357 8.51946 8.96260 9.60231 11.08463 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.003193 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.131262 B = 8767.684877 C = 9042.753940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.532 4.532 2 S 2.259 3.741 3 C -0.667 4.667 4 O -0.931 6.931 5 N -1.057 6.057 6 C 0.166 3.834 7 C -0.096 4.096 8 C -0.124 4.124 9 C 0.105 3.895 10 O -0.296 6.296 11 C 0.106 3.894 12 C 0.042 3.958 13 C -0.485 4.485 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.885 5.885 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.205 4.205 22 C -0.148 4.148 23 C -0.166 4.166 24 C -0.209 4.209 25 H 0.143 0.857 26 H 0.133 0.867 27 H 0.143 0.857 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.415 0.107 -4.798 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.690 4.690 2 S 2.453 3.547 3 C -0.818 4.818 4 O -0.916 6.916 5 N -0.942 5.942 6 C 0.059 3.941 7 C -0.121 4.121 8 C -0.144 4.144 9 C 0.056 3.944 10 O -0.208 6.208 11 C 0.031 3.969 12 C 0.041 3.959 13 C -0.523 4.523 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.522 5.522 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.242 4.242 22 C -0.186 4.186 23 C -0.185 4.185 24 C -0.234 4.234 25 H 0.161 0.839 26 H 0.152 0.848 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.426 -0.432 -5.027 22.987 hybrid contribution 0.617 1.530 0.067 1.650 sum -21.810 1.097 -4.960 22.393 Atomic orbital electron populations 1.28808 1.15042 1.13264 1.11921 1.15173 0.81530 0.80660 0.77297 1.30538 1.14312 1.26881 1.10118 1.93594 1.72642 1.63459 1.61955 1.69793 1.26047 1.51791 1.46612 1.17168 0.83737 0.98718 0.94516 1.20498 0.94225 1.02628 0.94776 1.20084 0.91280 1.03633 0.99362 1.19528 0.84923 0.96543 0.93433 1.86063 1.11655 1.77443 1.45687 1.22549 0.88931 0.98193 0.87219 1.18714 0.87339 0.92941 0.96891 1.20373 1.42700 0.97576 0.91660 0.91971 1.24988 0.95378 0.97207 0.95827 1.69992 1.46090 1.13391 1.22697 0.86657 0.79596 0.78664 0.83117 1.20193 1.21364 1.20087 1.22992 1.05079 0.92639 1.03538 1.22535 1.00413 1.01788 0.93851 1.20706 0.96065 1.03992 0.97765 1.21598 0.94749 1.08472 0.98614 0.83888 0.84822 0.83826 0.84652 0.86723 0.85417 0.85383 0.85295 0.91547 0.95417 0.93027 0.90187 0.91487 0.91792 0.89588 0.85637 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -1.18 10.89 101.05 1.10 -0.08 16 2 S 2.26 18.89 4.30 -107.50 -0.46 18.42 16 3 C -0.67 -4.49 10.23 101.05 1.03 -3.45 16 4 O -0.93 -12.65 16.16 -35.23 -0.57 -13.22 16 5 N -1.06 -13.45 10.16 32.00 0.33 -13.13 16 6 C 0.17 2.74 6.37 -84.81 -0.54 2.20 16 7 C -0.10 -1.59 10.02 -38.96 -0.39 -1.99 16 8 C -0.12 -2.27 9.92 -39.81 -0.39 -2.66 16 9 C 0.10 2.19 6.73 -38.48 -0.26 1.93 16 10 O -0.30 -7.03 10.04 -18.29 -0.18 -7.22 16 11 C 0.11 2.55 4.55 37.16 0.17 2.72 16 12 C 0.04 1.07 1.60 -155.66 -0.25 0.82 16 13 C -0.49 -13.68 8.76 -34.44 -0.30 -13.98 16 14 H 0.06 1.77 7.82 -52.48 -0.41 1.36 16 15 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 16 N -0.88 -25.19 12.93 55.43 0.72 -24.47 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.21 -4.70 9.96 -26.70 -0.27 -4.96 16 22 C -0.15 -3.54 9.43 -26.70 -0.25 -3.79 16 23 C -0.17 -3.24 8.96 -39.80 -0.36 -3.60 16 24 C -0.21 -3.63 7.47 -38.97 -0.29 -3.92 16 25 H 0.14 0.00 8.14 -51.92 -0.42 -0.42 16 26 H 0.13 -0.08 8.14 -51.93 -0.42 -0.50 16 27 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.14 1.30 5.91 -51.92 -0.31 0.99 16 29 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 33 H 0.07 1.70 7.63 -51.93 -0.40 1.31 16 34 H 0.03 0.62 7.61 -51.93 -0.39 0.22 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 36 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 40 H 0.13 2.42 6.26 -52.49 -0.33 2.09 16 41 H 0.11 1.73 4.61 -52.49 -0.24 1.49 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -37.18 352.26 -6.84 -44.02 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.86 Total: 2.70 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -1.09 Total: -28.95 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 1.04 Total: -37.60 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.75 Total: -20.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 18.89 SS G_CDS: -0.46 Total: 18.42 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.18 -6.84 -44.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882999708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.721 kcal (2) G-P(sol) polarization free energy of solvation -37.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds