Wall clock time and date at job start Tue Mar 31 2020 09:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 119.99971 * 2 1 4 4 H 1.48503 * 109.47137 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46900 * 299.99629 * 3 2 1 6 6 H 1.48495 * 109.47231 * 59.99853 * 3 2 1 7 7 C 1.39942 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00248 * 162.61723 * 7 2 1 9 9 C 1.41397 * 120.00097 * 342.61366 * 7 2 1 10 10 C 1.40727 * 120.24305 * 334.96657 * 9 7 2 11 11 C 1.37611 * 119.74147 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.25504 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74987 * 180.02562 * 12 11 10 14 14 N 1.46892 * 109.47388 * 56.89216 * 13 12 11 15 15 C 1.40033 * 111.00311 * 67.79807 * 14 13 12 16 16 C 1.39410 * 129.94878 * 319.79953 * 15 14 13 17 17 C 1.37918 * 120.19404 * 180.75879 * 16 15 14 18 18 C 1.38299 * 120.26464 * 359.92936 * 17 16 15 19 19 C 1.38307 * 119.88870 * 359.89963 * 18 17 16 20 20 C 1.37926 * 120.07561 * 0.02562 * 19 18 17 21 21 C 1.51574 * 131.55932 * 180.25609 * 20 19 18 22 22 C 1.47914 * 111.00097 * 187.77313 * 14 13 12 23 23 H 1.09002 * 110.94136 * 92.53928 * 22 14 13 24 24 C 1.52996 * 110.77538 * 329.18440 * 22 14 13 25 25 O 1.42894 * 109.47302 * 300.33819 * 24 22 14 26 26 C 1.38631 * 120.49863 * 0.27129 * 12 11 10 27 27 C 1.37625 * 120.24612 * 359.45206 * 26 12 11 28 28 H 0.96998 * 120.00094 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.12147 * 359.95480 * 10 9 7 30 30 H 1.08004 * 119.86953 * 180.02562 * 11 10 9 31 31 H 1.09008 * 109.46849 * 296.88694 * 13 12 11 32 32 H 1.09000 * 109.46693 * 176.89697 * 13 12 11 33 33 H 1.07992 * 119.90589 * 0.73332 * 16 15 14 34 34 H 1.07995 * 119.86169 * 179.97438 * 17 16 15 35 35 H 1.08003 * 120.06183 * 179.87692 * 18 17 16 36 36 H 1.07997 * 119.96366 * 180.02562 * 19 18 17 37 37 H 1.08998 * 110.74068 * 45.67920 * 21 20 19 38 38 H 1.09002 * 110.73659 * 282.35221 * 21 20 19 39 39 H 1.09001 * 109.46832 * 180.34169 * 24 22 14 40 40 H 1.09002 * 109.47396 * 60.34420 * 24 22 14 41 41 H 0.96703 * 114.00502 * 180.02562 * 25 24 22 42 42 H 1.07995 * 119.87871 * 179.70173 * 26 12 11 43 43 H 1.08005 * 120.12240 * 180.27376 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0510 -1.2334 -0.2789 9 6 1.3495 -2.4083 0.3670 10 6 0.2203 -2.3676 1.2059 11 6 -0.4129 -3.5383 1.5556 12 6 0.0578 -4.7545 1.0852 13 6 -0.6448 -6.0295 1.4749 14 7 -2.0571 -5.9511 1.0786 15 6 -2.1881 -5.9524 -0.3156 16 6 -1.4210 -5.3113 -1.2873 17 6 -1.7435 -5.4402 -2.6220 18 6 -2.8286 -6.2069 -3.0060 19 6 -3.5924 -6.8488 -2.0483 20 6 -3.2732 -6.7245 -0.7122 21 6 -3.9133 -7.3054 0.5328 22 6 -2.8207 -7.1023 1.6074 23 1 -3.2672 -6.8633 2.5726 24 6 -1.9292 -8.3410 1.7161 25 8 -1.4168 -8.6738 0.4244 26 6 1.1728 -4.8070 0.2632 27 6 1.8186 -3.6485 -0.1040 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1475 -1.4213 1.5740 30 1 -1.2799 -3.5094 2.1990 31 1 -0.5772 -6.1663 2.5542 32 1 -0.1724 -6.8730 0.9715 33 1 -0.5720 -4.7118 -0.9940 34 1 -1.1458 -4.9409 -3.3702 35 1 -3.0793 -6.3039 -4.0521 36 1 -4.4397 -7.4482 -2.3468 37 1 -4.1292 -8.3652 0.3973 38 1 -4.8181 -6.7563 0.7937 39 1 -2.5137 -9.1765 2.1014 40 1 -1.1007 -8.1341 2.3935 41 1 -0.8421 -9.4516 0.4176 42 1 1.5338 -5.7603 -0.0936 43 1 2.6845 -3.6914 -0.7481 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595655607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:20 Heat of formation + Delta-G solvation = 15.849878 kcal Electronic energy + Delta-G solvation = -25644.333985 eV Core-core repulsion = 22233.180576 eV Total energy + Delta-G solvation = -3411.153409 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.72600 -37.58595 -37.23719 -35.48346 -34.00198 -32.38016 -30.11053 -29.74177 -29.25216 -28.79484 -26.21348 -25.69339 -23.46509 -21.66164 -20.98998 -20.87477 -20.29248 -19.46489 -17.62327 -17.26874 -16.01590 -15.97932 -15.41142 -15.17519 -14.70646 -14.62417 -14.05141 -13.72161 -13.52702 -13.27051 -12.99590 -12.74215 -12.48863 -12.42390 -12.03250 -11.96689 -11.85775 -11.53726 -11.50707 -11.22414 -11.11419 -11.02335 -10.77428 -10.56723 -10.43604 -10.10050 -9.95817 -9.63621 -9.34809 -9.32413 -9.02032 -8.20662 -7.41496 -7.24544 -7.12964 -6.73384 -4.33036 1.93903 2.01613 2.75617 3.08060 3.09498 3.13754 3.18600 3.94582 4.00387 4.18810 4.43296 4.62331 4.83658 4.87806 5.01329 5.21657 5.38092 5.46294 5.54683 5.66237 5.71844 5.73702 5.85309 5.94066 6.01781 6.03288 6.18586 6.30888 6.32122 6.40021 6.47327 6.53535 6.88596 6.99017 7.02714 7.08674 7.12740 7.26469 7.32097 7.38117 7.55377 7.57903 7.64862 7.80249 7.90570 8.07955 8.18199 8.32473 8.67162 8.91789 8.99624 10.20644 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.004072 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.327160 B = 6875.223702 C = 7408.515077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.168 4.168 11 C -0.074 4.074 12 C -0.215 4.215 13 C 0.112 3.888 14 N -0.462 5.462 15 C 0.130 3.870 16 C -0.130 4.130 17 C -0.102 4.102 18 C -0.156 4.156 19 C -0.094 4.094 20 C -0.136 4.136 21 C -0.069 4.069 22 C 0.069 3.931 23 H 0.109 0.891 24 C 0.052 3.948 25 O -0.554 6.554 26 C -0.083 4.083 27 C -0.228 4.228 28 H 0.280 0.720 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.150 0.850 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.372 0.628 42 H 0.085 0.915 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.666 -13.553 1.506 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.187 4.187 11 C -0.093 4.093 12 C -0.217 4.217 13 C -0.013 4.013 14 N -0.175 5.175 15 C 0.032 3.968 16 C -0.150 4.150 17 C -0.121 4.121 18 C -0.175 4.175 19 C -0.113 4.113 20 C -0.139 4.139 21 C -0.106 4.106 22 C -0.038 4.038 23 H 0.127 0.873 24 C -0.027 4.027 25 O -0.359 6.359 26 C -0.102 4.102 27 C -0.248 4.248 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.167 0.833 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.218 0.782 42 H 0.103 0.897 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.396 -12.396 1.647 14.046 hybrid contribution 0.856 -0.262 -0.121 0.904 sum -5.540 -12.659 1.526 13.902 Atomic orbital electron populations 1.69843 1.07536 1.29087 1.35010 1.25902 0.94691 1.01246 0.92318 0.86312 0.81013 0.81154 0.78547 1.18432 1.20014 1.19734 1.19625 0.97937 0.91276 1.40393 0.90499 1.17625 0.91064 0.91955 0.88249 1.21309 0.99413 0.96755 1.01234 1.20454 0.97610 0.92306 0.98893 1.18844 1.00680 0.93076 1.09090 1.20989 0.84859 0.96665 0.98782 1.60801 1.12599 1.37151 1.06996 1.19369 0.94679 0.94614 0.88185 1.21394 1.01188 1.01127 0.91284 1.20905 0.97074 0.98415 0.95722 1.20828 0.97439 1.00808 0.98398 1.20123 0.99539 1.00310 0.91322 1.20248 0.98723 1.01065 0.93892 1.21135 0.97103 1.00665 0.91687 1.23013 0.93462 0.87650 0.99658 0.87334 1.22759 0.97191 0.96950 0.85774 1.86696 1.68786 1.51199 1.29176 1.20343 0.95688 0.96398 0.97766 1.20940 1.03990 0.92833 1.07036 0.90933 0.86637 0.89275 0.91926 0.93170 0.83298 0.86491 0.86938 0.87387 0.90733 0.90336 0.93271 0.92787 0.78152 0.89715 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.66 10.97 55.55 0.61 -20.05 16 2 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 3 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.46 -12.30 9.05 -37.74 -0.34 -12.64 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.11 3.01 5.57 -106.82 -0.59 2.42 16 10 C -0.17 -4.37 8.69 -38.87 -0.34 -4.71 16 11 C -0.07 -1.74 9.49 -39.66 -0.38 -2.11 16 12 C -0.22 -4.62 3.40 -104.33 -0.36 -4.97 16 13 C 0.11 1.99 3.69 -4.98 -0.02 1.97 16 14 N -0.46 -8.08 4.83 -162.93 -0.79 -8.87 16 15 C 0.13 2.45 5.03 -83.41 -0.42 2.03 16 16 C -0.13 -2.65 9.14 -39.26 -0.36 -3.01 16 17 C -0.10 -1.86 10.02 -39.68 -0.40 -2.26 16 18 C -0.16 -2.49 10.06 -39.53 -0.40 -2.88 16 19 C -0.09 -1.48 10.03 -39.67 -0.40 -1.88 16 20 C -0.14 -2.27 5.49 -104.04 -0.57 -2.84 16 21 C -0.07 -0.91 6.33 -26.62 -0.17 -1.08 16 22 C 0.07 0.92 3.87 -66.32 -0.26 0.67 16 23 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 24 C 0.05 0.58 5.86 37.16 0.22 0.80 16 25 O -0.55 -6.91 10.38 -35.23 -0.37 -7.28 16 26 C -0.08 -1.83 7.62 -39.66 -0.30 -2.13 16 27 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 28 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.12 3.14 6.19 -52.49 -0.32 2.82 16 30 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.06 1.03 7.55 -51.92 -0.39 0.63 16 32 H 0.05 0.88 5.83 -51.93 -0.30 0.58 16 33 H 0.15 3.41 4.10 -52.49 -0.22 3.20 16 34 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 36 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 41 H 0.37 3.01 9.12 45.56 0.42 3.43 16 42 H 0.08 1.70 7.94 -52.49 -0.42 1.28 16 43 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -29.73 341.47 -10.89 -40.62 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -4.92 Total: 13.41 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: -5.55 Total: -36.72 kcal Atomic # 7 Polarization: -28.75 SS G_CDS: -0.18 Total: -28.92 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.37 Total: -7.28 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.73 -10.89 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595655607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.472 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds