Wall clock time and date at job start Tue Mar 31 2020 10:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48497 * 109.47486 * 240.00541 * 3 2 1 5 5 H 1.48505 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47119 * 120.00126 * 3 2 1 7 7 C 1.38651 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00199 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99895 * 185.05798 * 9 7 2 11 11 C 1.38883 * 120.06891 * 354.46731 * 10 9 7 12 12 C 1.38096 * 119.93060 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.07003 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93429 * 180.02562 * 13 12 11 15 15 N 1.46894 * 109.47582 * 89.99525 * 14 13 12 16 16 C 1.46849 * 111.00223 * 66.04760 * 15 14 13 17 17 C 1.53032 * 109.52789 * 174.16182 * 16 15 14 18 18 H 1.09000 * 109.50293 * 179.11954 * 17 16 15 19 19 F 1.39898 * 109.50297 * 299.24253 * 17 16 15 20 20 C 1.53122 * 109.27695 * 59.18235 * 17 16 15 21 21 C 1.53121 * 109.15798 * 302.34545 * 20 17 16 22 22 H 1.09002 * 109.50664 * 297.67140 * 21 20 17 23 23 C 1.53009 * 109.50220 * 177.59529 * 21 20 17 24 24 O 1.42903 * 109.46815 * 64.99928 * 23 21 20 25 25 C 1.46846 * 110.99969 * 301.84217 * 15 14 13 26 26 C 1.38305 * 120.14063 * 0.27325 * 13 12 11 27 27 C 1.38105 * 120.06531 * 359.49408 * 26 13 12 28 28 H 0.96995 * 119.99796 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.03042 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96739 * 179.97438 * 12 11 10 31 31 H 1.09007 * 109.46970 * 329.99586 * 14 13 12 32 32 H 1.08996 * 109.47514 * 209.99854 * 14 13 12 33 33 H 1.08999 * 109.45925 * 54.14315 * 16 15 14 34 34 H 1.09007 * 109.46318 * 294.18306 * 16 15 14 35 35 H 1.09000 * 109.52444 * 62.25196 * 20 17 16 36 36 H 1.08995 * 109.52420 * 182.44148 * 20 17 16 37 37 H 1.08997 * 109.47137 * 184.99717 * 23 21 20 38 38 H 1.09001 * 109.46858 * 305.00102 * 23 21 20 39 39 H 0.96704 * 113.99942 * 180.02562 * 24 23 21 40 40 H 1.09002 * 109.46653 * 65.81808 * 25 15 14 41 41 H 1.08997 * 109.45453 * 305.84436 * 25 15 14 42 42 H 1.08000 * 119.97047 * 179.72420 * 26 13 12 43 43 H 1.07998 * 120.03193 * 180.25145 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 0.1056 11 6 3.4573 -3.4394 0.0922 12 6 4.2025 -4.5970 0.2008 13 6 3.5688 -5.8201 0.3234 14 6 4.3851 -7.0813 0.4424 15 7 4.6574 -7.3566 1.8593 16 6 3.4186 -7.6729 2.5816 17 6 3.7549 -8.0947 4.0137 18 1 2.8341 -8.3144 4.5541 19 9 4.5650 -9.2350 3.9868 20 6 4.4996 -6.9551 4.7147 21 6 5.7604 -6.6126 3.9162 22 1 6.4235 -7.4775 3.8942 23 6 6.4792 -5.4345 4.5769 24 8 6.9455 -5.8256 5.8698 25 6 5.3659 -6.2338 2.4868 26 6 2.1875 -5.8889 0.3320 27 6 1.4367 -4.7344 0.2285 28 1 -0.4849 0.8400 0.0004 29 1 3.9526 -2.4845 -0.0031 30 1 5.2813 -4.5470 0.1900 31 1 5.3274 -6.9559 -0.0910 32 1 3.8312 -7.9147 0.0103 33 1 2.9009 -8.4875 2.0752 34 1 2.7761 -6.7926 2.6036 35 1 3.8543 -6.0783 4.7705 36 1 4.7792 -7.2672 5.7208 37 1 7.3265 -5.1340 3.9607 38 1 5.7882 -4.5976 4.6777 39 1 7.4119 -5.1263 6.3480 40 1 4.7144 -5.3602 2.5093 41 1 6.2626 -6.0034 1.9117 42 1 1.6955 -6.8459 0.4234 43 1 0.3581 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137114708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:23 Heat of formation + Delta-G solvation = -105.678656 kcal Electronic energy + Delta-G solvation = -25993.142900 eV Core-core repulsion = 22145.950393 eV Total energy + Delta-G solvation = -3847.192507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -47.46206 -39.72685 -38.62613 -37.19896 -36.10276 -33.54818 -32.32132 -31.24889 -30.21848 -29.38881 -26.23765 -25.91223 -25.18809 -22.91158 -22.18272 -21.56036 -20.48762 -19.58815 -18.07786 -17.52012 -17.02773 -16.38412 -15.89816 -15.61797 -15.32563 -14.85750 -14.60406 -14.50866 -14.36729 -14.19247 -13.82126 -13.61707 -13.51346 -13.35995 -12.81533 -12.71503 -12.46133 -12.15506 -11.84025 -11.76165 -11.63419 -11.33375 -11.25190 -11.05253 -10.88253 -10.77916 -10.69928 -10.51672 -10.39191 -10.32558 -10.01744 -9.43162 -8.90893 -8.28309 -8.24829 -7.28217 -6.53252 -4.12581 2.10072 2.17265 3.07087 3.07510 3.11018 3.76325 3.89270 4.23637 4.42046 4.50715 4.57776 4.74549 4.76245 5.00868 5.12278 5.16796 5.20443 5.24050 5.29688 5.37414 5.42284 5.44240 5.55941 5.63898 5.66308 5.74731 5.77984 5.84297 5.95646 6.00032 6.09827 6.15175 6.30919 6.32581 6.59391 6.79238 6.93395 7.01928 7.09231 7.17280 7.29972 7.34787 7.45223 7.71870 7.91178 8.92022 9.61049 10.64438 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.003607 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.727297 B = 7760.765334 C = 8710.602100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.176 6.176 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.059 4.059 13 C -0.225 4.225 14 C 0.110 3.890 15 N -0.523 5.523 16 C 0.025 3.975 17 C 0.097 3.903 18 H 0.083 0.917 19 F -0.207 7.207 20 C -0.139 4.139 21 C -0.083 4.083 22 H 0.088 0.912 23 C 0.081 3.919 24 O -0.573 6.573 25 C 0.058 3.942 26 C -0.064 4.064 27 C -0.194 4.194 28 H 0.271 0.729 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.378 0.622 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.085 -11.068 7.076 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.078 4.078 13 C -0.227 4.227 14 C -0.016 4.016 15 N -0.245 5.245 16 C -0.104 4.104 17 C 0.060 3.940 18 H 0.101 0.899 19 F -0.188 7.188 20 C -0.177 4.177 21 C -0.102 4.102 22 H 0.106 0.894 23 C 0.003 3.997 24 O -0.378 6.378 25 C -0.071 4.071 26 C -0.083 4.083 27 C -0.213 4.213 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.224 0.776 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.127 0.873 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.688 -11.861 6.892 16.793 hybrid contribution 0.192 2.187 0.018 2.195 sum 9.880 -9.674 6.910 15.458 Atomic orbital electron populations 1.70024 1.05985 1.27912 1.45618 1.25294 0.95844 0.98863 0.96414 0.85785 0.78739 0.79734 0.79210 1.19442 1.20184 1.19496 1.21274 0.91755 0.80802 1.53181 0.89129 1.83979 1.34398 1.11498 1.78028 1.19404 0.90296 0.88051 0.92060 1.21153 0.93820 0.98912 1.11547 1.20611 0.98104 0.91836 0.97215 1.19944 0.94172 0.95419 1.13208 1.20947 0.98685 0.94125 0.87891 1.62310 1.21302 1.38486 1.02426 1.22714 0.92596 1.01615 0.93465 1.21606 0.92618 0.82857 0.96882 0.89887 1.92800 1.75774 1.52548 1.97658 1.22166 0.97158 0.98343 0.99991 1.21101 0.96788 0.98547 0.93778 0.89369 1.22159 0.97179 0.96434 0.83938 1.86466 1.77849 1.42858 1.30622 1.22055 0.98748 0.92921 0.93332 1.20513 0.92937 0.96589 0.98244 1.20216 0.99546 0.90408 1.11168 0.91866 0.85644 0.87740 0.90567 0.90628 0.89931 0.91976 0.90475 0.90179 0.93404 0.93379 0.77558 0.93090 0.90688 0.87312 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.74 9.49 30.88 0.29 -10.44 16 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 9 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 10 C 0.16 3.63 6.65 -39.10 -0.26 3.37 16 11 C -0.23 -4.85 9.17 -39.39 -0.36 -5.21 16 12 C -0.06 -1.00 8.00 -39.61 -0.32 -1.32 16 13 C -0.23 -3.52 4.04 -104.57 -0.42 -3.94 16 14 C 0.11 1.43 5.55 -4.98 -0.03 1.40 16 15 N -0.52 -6.71 4.80 -236.12 -1.13 -7.85 16 16 C 0.02 0.30 4.59 -3.84 -0.02 0.28 16 17 C 0.10 1.13 4.17 -26.65 -0.11 1.02 16 18 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 19 F -0.21 -2.88 16.62 2.25 0.04 -2.84 16 20 C -0.14 -1.60 4.94 -26.61 -0.13 -1.73 16 21 C -0.08 -0.98 2.46 -90.53 -0.22 -1.20 16 22 H 0.09 1.17 7.91 -51.93 -0.41 0.76 16 23 C 0.08 0.83 6.43 37.16 0.24 1.07 16 24 O -0.57 -5.87 13.25 -35.23 -0.47 -6.34 16 25 C 0.06 0.71 3.82 -3.83 -0.01 0.70 16 26 C -0.06 -1.06 8.12 -39.61 -0.32 -1.38 16 27 C -0.19 -3.92 9.99 -39.39 -0.39 -4.31 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 30 H 0.10 1.53 8.02 -52.49 -0.42 1.11 16 31 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 33 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 34 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.38 2.16 9.12 45.56 0.42 2.58 16 40 H 0.05 0.72 6.46 -51.93 -0.34 0.38 16 41 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.11 1.53 8.04 -52.49 -0.42 1.10 16 43 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -31.02 347.94 -8.17 -39.19 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.42 Total: 7.23 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -2.17 Total: -20.70 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: -0.37 Total: -31.85 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.47 Total: -11.24 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.02 -8.17 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137114708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.489 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds