Wall clock time and date at job start Tue Mar 31 2020 10:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48497 * 109.47486 * 240.00541 * 3 2 1 5 5 H 1.48505 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47119 * 120.00126 * 3 2 1 7 7 C 1.38651 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00199 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99895 * 185.05798 * 9 7 2 11 11 C 1.38883 * 120.06891 * 354.46731 * 10 9 7 12 12 C 1.38096 * 119.93060 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.07003 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93429 * 180.02562 * 13 12 11 15 15 N 1.46894 * 109.47582 * 89.99525 * 14 13 12 16 16 C 1.46849 * 111.00223 * 66.04760 * 15 14 13 17 17 C 1.53032 * 109.52789 * 174.16182 * 16 15 14 18 18 H 1.09000 * 109.50293 * 179.11954 * 17 16 15 19 19 F 1.39898 * 109.50297 * 299.24253 * 17 16 15 20 20 C 1.53122 * 109.27695 * 59.18235 * 17 16 15 21 21 C 1.53121 * 109.15798 * 302.34545 * 20 17 16 22 22 H 1.09002 * 109.50664 * 297.67140 * 21 20 17 23 23 C 1.53009 * 109.50220 * 177.59529 * 21 20 17 24 24 O 1.42903 * 109.46815 * 64.99928 * 23 21 20 25 25 C 1.46846 * 110.99969 * 301.84217 * 15 14 13 26 26 C 1.38305 * 120.14063 * 0.27325 * 13 12 11 27 27 C 1.38105 * 120.06531 * 359.49408 * 26 13 12 28 28 H 0.96995 * 119.99796 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.03042 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96739 * 179.97438 * 12 11 10 31 31 H 1.09007 * 109.46970 * 329.99586 * 14 13 12 32 32 H 1.08996 * 109.47514 * 209.99854 * 14 13 12 33 33 H 1.08999 * 109.45925 * 54.14315 * 16 15 14 34 34 H 1.09007 * 109.46318 * 294.18306 * 16 15 14 35 35 H 1.09000 * 109.52444 * 62.25196 * 20 17 16 36 36 H 1.08995 * 109.52420 * 182.44148 * 20 17 16 37 37 H 1.08997 * 109.47137 * 184.99717 * 23 21 20 38 38 H 1.09001 * 109.46858 * 305.00102 * 23 21 20 39 39 H 0.96704 * 113.99942 * 180.02562 * 24 23 21 40 40 H 1.09002 * 109.46653 * 65.81808 * 25 15 14 41 41 H 1.08997 * 109.45453 * 305.84436 * 25 15 14 42 42 H 1.08000 * 119.97047 * 179.72420 * 26 13 12 43 43 H 1.07998 * 120.03193 * 180.25145 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 0.1056 11 6 3.4573 -3.4394 0.0922 12 6 4.2025 -4.5970 0.2008 13 6 3.5688 -5.8201 0.3234 14 6 4.3851 -7.0813 0.4424 15 7 4.6574 -7.3566 1.8593 16 6 3.4186 -7.6729 2.5816 17 6 3.7549 -8.0947 4.0137 18 1 2.8341 -8.3144 4.5541 19 9 4.5650 -9.2350 3.9868 20 6 4.4996 -6.9551 4.7147 21 6 5.7604 -6.6126 3.9162 22 1 6.4235 -7.4775 3.8942 23 6 6.4792 -5.4345 4.5769 24 8 6.9455 -5.8256 5.8698 25 6 5.3659 -6.2338 2.4868 26 6 2.1875 -5.8889 0.3320 27 6 1.4367 -4.7344 0.2285 28 1 -0.4849 0.8400 0.0004 29 1 3.9526 -2.4845 -0.0031 30 1 5.2813 -4.5470 0.1900 31 1 5.3274 -6.9559 -0.0910 32 1 3.8312 -7.9147 0.0103 33 1 2.9009 -8.4875 2.0752 34 1 2.7761 -6.7926 2.6036 35 1 3.8543 -6.0783 4.7705 36 1 4.7792 -7.2672 5.7208 37 1 7.3265 -5.1340 3.9607 38 1 5.7882 -4.5976 4.6777 39 1 7.4119 -5.1263 6.3480 40 1 4.7144 -5.3602 2.5093 41 1 6.2626 -6.0034 1.9117 42 1 1.6955 -6.8459 0.4234 43 1 0.3581 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137114708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:22 Heat of formation + Delta-G solvation = -127.746855 kcal Electronic energy + Delta-G solvation = -25994.099849 eV Core-core repulsion = 22145.950393 eV Total energy + Delta-G solvation = -3848.149456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.46721 -41.10216 -39.97623 -38.39854 -37.29602 -34.71404 -34.13653 -32.31376 -31.64661 -30.76417 -27.74056 -26.86100 -26.73569 -24.06672 -23.57421 -22.74212 -21.81350 -20.59108 -19.86325 -18.83558 -18.27735 -17.40604 -16.86021 -16.69036 -16.44351 -16.42544 -16.16419 -15.69385 -15.59930 -15.40721 -15.20383 -15.01862 -14.73132 -14.42782 -14.30964 -14.04231 -13.67917 -13.54843 -13.13054 -12.94723 -12.68555 -12.64956 -12.52927 -12.40816 -12.36744 -12.17697 -12.09945 -11.76766 -11.30005 -11.24948 -11.18867 -10.83400 -10.78998 -9.78653 -9.34202 -8.92048 -8.48897 -6.17324 0.57004 0.64505 1.33702 1.43869 1.49788 2.16065 2.71356 2.91819 3.16892 3.42053 3.50387 3.53668 3.68085 3.81520 3.84350 4.03043 4.08249 4.17905 4.26543 4.34193 4.39188 4.42333 4.52320 4.56513 4.57014 4.67129 4.70810 4.76137 4.81916 4.90639 4.96571 5.00175 5.09392 5.13169 5.21541 5.27349 5.37483 5.54229 5.69545 5.73310 6.00677 6.05864 6.11917 6.20015 6.89415 6.95814 7.76495 8.74016 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.003607 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.727297 B = 7760.765334 C = 8710.602100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.115 3.885 11 C -0.243 4.243 12 C -0.054 4.054 13 C -0.194 4.194 14 C 0.112 3.888 15 N -0.524 5.524 16 C 0.023 3.977 17 C 0.094 3.906 18 H 0.104 0.896 19 F -0.219 7.219 20 C -0.138 4.138 21 C -0.081 4.081 22 H 0.074 0.926 23 C 0.083 3.917 24 O -0.589 6.589 25 C 0.060 3.940 26 C -0.054 4.054 27 C -0.206 4.206 28 H 0.273 0.727 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.397 0.603 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.144 0.856 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 -12.778 7.401 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.065 3.935 11 C -0.262 4.262 12 C -0.072 4.072 13 C -0.196 4.196 14 C -0.015 4.015 15 N -0.246 5.246 16 C -0.105 4.105 17 C 0.058 3.942 18 H 0.122 0.878 19 F -0.200 7.200 20 C -0.175 4.175 21 C -0.100 4.100 22 H 0.093 0.907 23 C 0.005 3.995 24 O -0.397 6.397 25 C -0.068 4.068 26 C -0.073 4.073 27 C -0.225 4.225 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.155 0.845 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.246 0.754 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.162 0.838 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.239 -13.624 7.232 19.691 hybrid contribution -0.443 2.329 -0.006 2.371 sum 11.796 -11.295 7.226 17.859 Atomic orbital electron populations 1.70174 1.08041 1.28878 1.48759 1.26569 0.96810 1.02716 0.95824 0.84677 0.77436 0.74357 0.79953 1.18148 1.19688 1.18108 1.21763 0.92470 0.81433 1.53349 0.88123 1.83944 1.36034 1.12654 1.81333 1.19957 0.91667 0.87905 0.94003 1.21242 0.93013 1.00072 1.11866 1.20943 0.99586 0.90926 0.95759 1.20438 0.94094 0.96431 1.08672 1.21093 0.99187 0.92773 0.88405 1.62346 1.21528 1.38388 1.02314 1.22766 0.92209 1.01583 0.93952 1.21749 0.93232 0.82332 0.96885 0.87791 1.92777 1.76275 1.53250 1.97700 1.22147 0.97182 0.98343 0.99876 1.21049 0.96665 0.98581 0.93658 0.90717 1.22106 0.97541 0.95599 0.84235 1.86415 1.78239 1.44297 1.30764 1.22057 0.98759 0.92019 0.93981 1.20889 0.93410 0.96645 0.96357 1.20452 0.99826 0.90728 1.11533 0.91835 0.86562 0.84514 0.88867 0.88786 0.88619 0.93024 0.90523 0.90490 0.92123 0.93503 0.75357 0.94794 0.89527 0.83813 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.93 13.67 21.61 0.30 -55.64 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 3 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.41 -23.70 9.49 67.92 0.64 -23.06 16 8 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 9 O -0.23 -13.82 9.76 -22.75 -0.22 -14.04 16 10 C 0.12 5.55 6.65 22.58 0.15 5.70 16 11 C -0.24 -10.04 9.17 22.39 0.21 -9.83 16 12 C -0.05 -1.68 8.00 22.25 0.18 -1.51 16 13 C -0.19 -5.41 4.04 -19.83 -0.08 -5.49 16 14 C 0.11 2.39 5.55 85.56 0.48 2.86 16 15 N -0.52 -11.48 4.80 -900.94 -4.32 -15.80 16 16 C 0.02 0.50 4.59 86.32 0.40 0.89 16 17 C 0.09 1.95 4.17 30.65 0.13 2.08 16 18 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 19 F -0.22 -5.55 16.62 44.97 0.75 -4.81 16 20 C -0.14 -2.91 4.94 30.68 0.15 -2.76 16 21 C -0.08 -1.71 2.46 -10.74 -0.03 -1.74 16 22 H 0.07 1.82 7.91 -2.39 -0.02 1.80 16 23 C 0.08 1.54 6.43 71.99 0.46 2.00 16 24 O -0.59 -10.92 13.25 -148.98 -1.97 -12.90 16 25 C 0.06 1.30 3.82 86.33 0.33 1.63 16 26 C -0.05 -1.68 8.12 22.25 0.18 -1.50 16 27 C -0.21 -8.40 9.99 22.39 0.22 -8.17 16 28 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.12 4.94 5.64 -2.91 -0.02 4.93 16 30 H 0.14 3.45 8.02 -2.91 -0.02 3.42 16 31 H 0.09 1.77 8.08 -2.38 -0.02 1.75 16 32 H 0.09 1.76 8.00 -2.39 -0.02 1.74 16 33 H 0.10 1.79 8.06 -2.39 -0.02 1.77 16 34 H 0.05 1.22 6.56 -2.38 -0.02 1.20 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.68 7.90 -2.39 -0.02 1.66 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.40 3.74 9.12 -74.05 -0.68 3.06 16 40 H 0.03 0.87 6.46 -2.39 -0.02 0.85 16 41 H 0.09 1.69 8.12 -2.39 -0.02 1.67 16 42 H 0.14 3.45 8.04 -2.91 -0.02 3.43 16 43 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -71.66 347.94 0.79 -70.87 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.35 Total: 27.94 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 3.88 Total: -39.63 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -4.02 Total: -71.44 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -2.20 Total: -26.93 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.75 Total: -4.81 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -71.66 0.79 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137114708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.877 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds