Wall clock time and date at job start Tue Mar 31 2020 09:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48504 * 109.47119 * 275.37893 * 3 2 1 5 5 H 1.48500 * 109.46723 * 35.37650 * 3 2 1 6 6 H 1.48496 * 109.47016 * 155.37342 * 3 2 1 7 7 C 1.39951 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00264 * 342.10536 * 7 2 1 9 9 C 1.41017 * 119.99916 * 162.11337 * 7 2 1 10 10 C 1.40995 * 120.70509 * 330.05365 * 9 7 2 11 11 C 1.38010 * 118.28039 * 180.02562 * 10 9 7 12 12 C 1.38676 * 119.62870 * 0.27620 * 11 10 9 13 13 N 1.31968 * 121.44484 * 359.39211 * 12 11 10 14 14 C 1.32268 * 121.86907 * 0.64338 * 13 12 11 15 15 N 1.38085 * 119.90946 * 179.67784 * 14 13 12 16 16 C 1.46500 * 119.99890 * 359.97438 * 15 14 13 17 17 C 1.50700 * 109.46956 * 179.97438 * 16 15 14 18 18 C 1.38261 * 120.08368 * 90.00098 * 17 16 15 19 19 C 1.38015 * 119.87247 * 180.02562 * 18 17 16 20 20 C 1.38741 * 120.37162 * 359.97438 * 19 18 17 21 21 C 1.37828 * 119.72468 * 359.80418 * 20 19 18 22 22 C 1.38031 * 120.08752 * 269.72329 * 17 16 15 23 23 C 1.50716 * 121.65607 * 180.53270 * 21 20 19 24 24 C 1.52905 * 109.95034 * 342.80953 * 23 21 20 25 25 N 1.47156 * 108.50632 * 50.47099 * 24 23 21 26 26 C 1.46635 * 110.27648 * 288.79402 * 25 24 23 27 27 H 0.96999 * 119.99529 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.86170 * 359.97438 * 10 9 7 29 29 H 1.08005 * 120.18637 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.27727 * 179.72630 * 12 11 10 31 31 H 0.96996 * 120.00107 * 179.97438 * 15 14 13 32 32 H 1.08999 * 109.47538 * 299.99938 * 16 15 14 33 33 H 1.09005 * 109.47040 * 60.00184 * 16 15 14 34 34 H 1.07997 * 120.06574 * 0.05827 * 18 17 16 35 35 H 1.07998 * 119.81635 * 180.02562 * 19 18 17 36 36 H 1.08003 * 119.82848 * 359.97438 * 22 17 16 37 37 H 1.08999 * 109.39544 * 102.95587 * 23 21 20 38 38 H 1.09006 * 109.39324 * 222.76162 * 23 21 20 39 39 H 1.08996 * 109.63154 * 170.17482 * 24 23 21 40 40 H 1.09001 * 109.62866 * 290.56763 * 24 23 21 41 41 H 1.00902 * 110.99802 * 165.35944 * 25 24 23 42 42 H 1.08992 * 109.26843 * 292.26171 * 26 25 24 43 43 H 1.09000 * 109.26950 * 172.78549 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3766 2.1120 -1.3939 5 1 1.5016 2.6171 0.8106 6 1 3.5924 1.4099 0.5834 7 6 2.0084 -1.2121 -0.0005 8 1 1.5075 -2.1249 0.2864 9 6 3.3674 -1.2415 -0.3756 10 6 3.8784 -0.3114 -1.3039 11 6 5.2159 -0.3860 -1.6356 12 6 6.0116 -1.3648 -1.0594 13 7 5.5214 -2.2251 -0.1871 14 6 4.2485 -2.2068 0.1721 15 7 3.7770 -3.1307 1.0837 16 6 4.6861 -4.1296 1.6511 17 6 3.9287 -5.0100 2.6115 18 6 3.3161 -6.1637 2.1582 19 6 2.6231 -6.9665 3.0415 20 6 2.5377 -6.6230 4.3829 21 6 3.1525 -5.4751 4.8349 22 6 3.8495 -4.6698 3.9468 23 6 3.0976 -5.0668 6.2846 24 6 1.9729 -5.8193 6.9964 25 7 2.1131 -7.2547 6.7038 26 6 1.7615 -7.5251 5.3061 27 1 -0.4849 0.8401 -0.0004 28 1 3.2394 0.4395 -1.7447 29 1 5.6396 0.3109 -2.3437 30 1 7.0565 -1.4208 -1.3264 31 1 2.8439 -3.1182 1.3483 32 1 5.1019 -4.7396 0.8492 33 1 5.4945 -3.6258 2.1810 34 1 3.3802 -6.4364 1.1152 35 1 2.1453 -7.8677 2.6865 36 1 4.3321 -3.7711 4.3018 37 1 4.0487 -5.3008 6.7629 38 1 2.9128 -3.9946 6.3519 39 1 2.0462 -5.6560 8.0716 40 1 1.0081 -5.4618 6.6366 41 1 1.5501 -7.8084 7.3319 42 1 0.6946 -7.3532 5.1639 43 1 1.9923 -8.5642 5.0717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162795310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:33 Heat of formation + Delta-G solvation = 53.477586 kcal Electronic energy + Delta-G solvation = -24325.682356 eV Core-core repulsion = 20948.453358 eV Total energy + Delta-G solvation = -3377.228998 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.08826 -38.71877 -36.99566 -34.65401 -33.87640 -32.73629 -31.46726 -31.18293 -29.34150 -28.73456 -26.10854 -25.09665 -23.80206 -22.90943 -22.14730 -21.40313 -20.75261 -19.16054 -17.46652 -16.98144 -16.78744 -15.95458 -15.52567 -15.31558 -14.97472 -14.75064 -14.46914 -14.38354 -13.78809 -13.45555 -13.42156 -13.18630 -13.06181 -12.77078 -12.58119 -12.27168 -12.12293 -12.01410 -11.96015 -11.65899 -11.36677 -11.32343 -10.79417 -10.74981 -10.57363 -10.27914 -9.89573 -9.42536 -9.10880 -8.95392 -8.57823 -8.41925 -8.21986 -8.06475 -6.95008 -6.72754 -4.36485 1.36280 1.49220 2.57068 2.77441 3.09942 3.19676 3.31524 3.70548 3.95147 3.97622 4.52801 4.57540 4.60070 4.66607 4.91628 4.99389 5.12429 5.16549 5.24084 5.28551 5.39459 5.46946 5.54630 5.65398 5.72656 5.85524 5.90022 5.94925 6.04968 6.13496 6.23677 6.25500 6.42391 6.46993 6.55911 6.57796 6.71494 6.83201 6.84565 7.03236 7.07071 7.14949 7.34304 7.59030 7.80025 8.08783 8.31917 8.41186 8.70794 8.80370 9.58694 10.07271 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.003537 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.121927 B = 7914.143348 C = 8827.782009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.247 1.247 7 C -0.442 4.442 8 H 0.089 0.911 9 C 0.016 3.984 10 C -0.200 4.200 11 C -0.173 4.173 12 C 0.005 3.995 13 N -0.530 5.530 14 C 0.326 3.674 15 N -0.721 5.721 16 C 0.184 3.816 17 C -0.092 4.092 18 C -0.102 4.102 19 C -0.119 4.119 20 C -0.083 4.083 21 C -0.073 4.073 22 C -0.100 4.100 23 C -0.077 4.077 24 C 0.053 3.947 25 N -0.685 5.685 26 C 0.098 3.902 27 H 0.284 0.716 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.407 0.593 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.344 0.656 42 H 0.043 0.957 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -10.763 11.048 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.133 4.133 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.170 1.170 7 C -0.473 4.473 8 H 0.107 0.893 9 C 0.009 3.991 10 C -0.226 4.226 11 C -0.196 4.196 12 C -0.147 4.147 13 N -0.248 5.248 14 C 0.086 3.914 15 N -0.360 5.360 16 C 0.059 3.941 17 C -0.093 4.093 18 C -0.121 4.121 19 C -0.138 4.138 20 C -0.084 4.084 21 C -0.073 4.073 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.076 4.076 25 N -0.316 5.316 26 C -0.031 4.031 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.245 0.755 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.162 0.838 42 H 0.061 0.939 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.233 -11.322 11.305 16.323 hybrid contribution -1.672 1.580 -0.466 2.348 sum 1.561 -9.742 10.839 14.657 Atomic orbital electron populations 1.69704 1.07944 1.30103 1.35871 1.26057 0.94674 1.01441 0.91082 0.86307 0.81187 0.80035 0.78794 1.19719 1.21915 1.17025 1.19083 0.92662 0.95875 1.39653 0.89291 1.18059 0.93860 0.93422 0.93789 1.21020 0.95474 1.03918 1.02155 1.21285 0.95020 1.00578 1.02699 1.21403 0.98236 0.95518 0.99535 1.66622 1.13464 1.27253 1.17446 1.18426 0.88582 0.92316 0.92077 1.43830 1.11605 1.33234 1.47375 1.19830 0.91448 0.88979 0.93847 1.20054 0.98976 0.95852 0.94393 1.21011 0.97062 0.94388 0.99604 1.20954 1.00154 1.00090 0.92580 1.19472 0.99453 0.95466 0.93981 1.19462 0.98008 0.94453 0.95392 1.21050 0.98924 0.99219 0.92700 1.20532 0.99615 0.99609 0.91632 1.21989 0.97458 0.88063 1.00086 1.60602 1.60429 1.06674 1.03867 1.20755 0.96389 0.98698 0.87278 0.90552 0.87565 0.88252 0.85933 0.75524 0.92244 0.92285 0.85833 0.86226 0.85928 0.90025 0.90373 0.90368 0.94422 0.83840 0.93892 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.33 13.93 55.55 0.77 -20.55 16 2 C 0.09 2.22 5.42 -17.32 -0.09 2.12 16 3 Si 0.91 20.87 24.53 -169.99 -4.17 16.70 16 4 H -0.27 -6.05 6.71 56.52 0.38 -5.67 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.25 -5.90 6.85 56.52 0.39 -5.51 16 7 C -0.44 -11.62 8.94 -37.89 -0.34 -11.96 16 8 H 0.09 2.40 7.03 -52.49 -0.37 2.03 16 9 C 0.02 0.41 5.12 -106.47 -0.55 -0.13 16 10 C -0.20 -4.89 7.27 -38.62 -0.28 -5.17 16 11 C -0.17 -3.84 10.08 -39.50 -0.40 -4.24 16 12 C 0.00 0.10 11.17 -17.33 -0.19 -0.09 16 13 N -0.53 -12.35 9.54 -11.87 -0.11 -12.46 16 14 C 0.33 7.77 7.52 -155.03 -1.17 6.60 16 15 N -0.72 -14.89 5.60 -61.15 -0.34 -15.24 16 16 C 0.18 3.19 5.81 -5.19 -0.03 3.16 16 17 C -0.09 -1.40 5.24 -104.69 -0.55 -1.95 16 18 C -0.10 -1.43 9.71 -39.65 -0.38 -1.81 16 19 C -0.12 -1.49 9.65 -39.48 -0.38 -1.88 16 20 C -0.08 -1.04 5.79 -104.63 -0.61 -1.65 16 21 C -0.07 -0.96 5.77 -104.60 -0.60 -1.56 16 22 C -0.10 -1.44 9.31 -39.50 -0.37 -1.81 16 23 C -0.08 -0.82 5.94 -27.92 -0.17 -0.99 16 24 C 0.05 0.49 6.58 -3.73 -0.02 0.47 16 25 N -0.69 -6.30 6.88 -115.17 -0.79 -7.09 16 26 C 0.10 0.97 6.34 -5.16 -0.03 0.93 16 27 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 28 H 0.11 2.57 4.81 -52.49 -0.25 2.32 16 29 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 30 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 31 H 0.41 8.50 6.75 -40.82 -0.28 8.23 16 32 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.04 0.36 8.06 -51.93 -0.42 -0.05 16 41 H 0.34 2.32 8.90 -39.29 -0.35 1.97 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -29.06 347.81 -11.47 -40.52 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.90 Total: 12.82 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -6.16 Total: -19.95 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.47 Total: -55.34 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.17 Total: 16.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.06 -11.47 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162795310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.001 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds