Wall clock time and date at job start Tue Mar 31 2020 10:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47070 * 2 1 4 4 C 1.53006 * 109.47200 * 119.99848 * 2 1 3 5 5 N 1.46499 * 109.46572 * 64.99940 * 4 2 1 6 6 C 1.34820 * 125.88044 * 125.29242 * 5 4 2 7 7 C 1.36539 * 107.59551 * 180.15237 * 6 5 4 8 8 C 1.48286 * 126.24096 * 179.83590 * 7 6 5 9 9 C 1.39133 * 120.27829 * 303.39809 * 8 7 6 10 10 C 1.38344 * 120.10981 * 180.22910 * 9 8 7 11 11 C 1.38024 * 120.76089 * 359.51793 * 10 9 8 12 12 C 1.39129 * 120.23267 * 0.44765 * 11 10 9 13 13 N 1.38180 * 132.74213 * 179.81233 * 12 11 10 14 14 H 0.96996 * 124.69666 * 0.02562 * 13 12 11 15 15 C 1.35615 * 110.59579 * 180.02562 * 13 12 11 16 16 C 1.38988 * 109.24510 * 359.97438 * 15 13 12 17 17 C 1.40946 * 126.93195 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00421 * 158.64237 * 17 16 15 19 19 C 1.39677 * 119.99864 * 338.64512 * 17 16 15 20 20 N 1.31082 * 120.00049 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99975 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46975 * 60.00269 * 21 19 17 23 23 H 1.48503 * 109.46978 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47429 * 300.00280 * 21 19 17 25 25 C 1.40160 * 120.27923 * 123.37168 * 8 7 6 26 26 C 1.40924 * 107.52431 * 359.57796 * 7 6 5 27 27 N 1.30657 * 108.08916 * 0.25638 * 26 7 6 28 28 H 1.08994 * 109.47200 * 59.99629 * 1 2 3 29 29 H 1.08999 * 109.46821 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46778 * 299.99803 * 1 2 3 31 31 H 1.08997 * 109.47257 * 240.00170 * 2 1 3 32 32 H 1.09010 * 109.47529 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47665 * 299.99994 * 3 2 1 34 34 H 1.08997 * 109.47625 * 60.00288 * 3 2 1 35 35 H 1.08997 * 109.47129 * 305.00077 * 4 2 1 36 36 H 1.09004 * 109.46874 * 184.99860 * 4 2 1 37 37 H 1.08002 * 126.20281 * 0.02562 * 6 5 4 38 38 H 1.08005 * 119.94330 * 359.95216 * 9 8 7 39 39 H 1.07999 * 119.61355 * 179.74152 * 10 9 8 40 40 H 1.08004 * 119.88426 * 180.25830 * 11 10 9 41 41 H 1.08001 * 125.37503 * 179.97438 * 15 13 12 42 42 H 0.96994 * 120.00347 * 179.97438 * 20 19 17 43 43 H 1.07994 * 125.95843 * 180.29828 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4874 -3.1864 1.2927 7 6 1.7354 -4.3209 1.1848 8 6 2.2389 -5.7147 1.2371 9 6 3.2222 -6.1392 0.3490 10 6 3.6861 -7.4416 0.3978 11 6 3.1915 -8.3327 1.3286 12 6 2.2084 -7.9326 2.2281 13 7 1.5403 -8.5922 3.2420 14 1 1.6847 -9.5198 3.4861 15 6 0.6550 -7.7629 3.8484 16 6 0.7122 -6.5119 3.2455 17 6 -0.0478 -5.3738 3.5827 18 1 0.2998 -4.3901 3.3036 19 6 -1.2506 -5.5181 4.2779 20 7 -1.6724 -6.7119 4.6172 21 14 -2.2576 -4.0097 4.7254 22 1 -2.6436 -3.2870 3.4870 23 1 -3.4806 -4.4298 5.4556 24 1 -1.4488 -3.1132 5.5900 25 6 1.7287 -6.6154 2.1820 26 6 0.3926 -3.9260 1.0206 27 7 0.3504 -2.6201 1.0250 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1264 -0.6443 1.2951 37 1 3.5574 -3.1412 1.4323 38 1 3.6209 -5.4519 -0.3826 39 1 4.4466 -7.7637 -0.2981 40 1 3.5668 -9.3450 1.3568 41 1 0.0078 -8.0321 4.6700 42 1 -2.5074 -6.8122 5.1003 43 1 -0.4541 -4.5874 0.9110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240887476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:05 Heat of formation + Delta-G solvation = 120.047039 kcal Electronic energy + Delta-G solvation = -25139.378359 eV Core-core repulsion = 21765.036029 eV Total energy + Delta-G solvation = -3374.342330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.154 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.64147 -39.48957 -36.40710 -35.61520 -33.44136 -31.90049 -31.03127 -29.33379 -27.95415 -27.51415 -27.01085 -25.90995 -24.47757 -21.99239 -21.07992 -20.43528 -19.89834 -19.68840 -19.18633 -17.24611 -16.09326 -15.67546 -15.24124 -15.14822 -14.77885 -14.32717 -14.25511 -13.75837 -13.34141 -13.11645 -12.99715 -12.90317 -12.59714 -12.43088 -12.30505 -12.08506 -11.99601 -11.46630 -11.27163 -11.17196 -11.05323 -10.90326 -10.79240 -10.75744 -10.50487 -10.38928 -9.84175 -9.78477 -9.57544 -9.12291 -8.68794 -8.36506 -7.59494 -6.99428 -6.39602 -6.34743 -3.89162 2.06552 2.55364 2.69794 2.99527 3.19398 3.23584 3.31190 3.62569 4.18585 4.30003 4.58597 4.61441 4.72885 4.87297 4.97202 5.21886 5.34726 5.41788 5.50449 5.59578 5.64413 5.70855 5.77702 5.83489 5.89568 5.94854 6.03781 6.04837 6.26533 6.32574 6.34359 6.51776 6.58454 6.70080 6.78519 6.91467 7.23684 7.29186 7.35555 7.48681 7.57482 7.61322 7.77490 7.85069 8.14680 8.37786 8.42905 8.77699 9.09517 9.23583 9.29599 10.62663 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.005783 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.822776 B = 4840.288879 C = 7080.112652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C -0.145 4.145 4 C 0.143 3.857 5 N -0.380 5.380 6 C 0.050 3.950 7 C -0.167 4.167 8 C 0.048 3.952 9 C -0.179 4.179 10 C -0.115 4.115 11 C -0.156 4.156 12 C 0.086 3.914 13 N -0.593 5.593 14 H 0.393 0.607 15 C -0.082 4.082 16 C 0.028 3.972 17 C -0.417 4.417 18 H 0.076 0.924 19 C 0.062 3.938 20 N -0.838 5.838 21 Si 0.901 3.099 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.112 4.112 26 C 0.098 3.902 27 N -0.306 5.306 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.166 0.834 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.174 0.826 42 H 0.270 0.730 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.378 7.786 -6.521 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.124 4.124 3 C -0.203 4.203 4 C 0.021 3.979 5 N -0.163 5.163 6 C -0.095 4.095 7 C -0.179 4.179 8 C 0.046 3.954 9 C -0.200 4.200 10 C -0.134 4.134 11 C -0.178 4.178 12 C -0.025 4.025 13 N -0.194 5.194 14 H 0.226 0.774 15 C -0.205 4.205 16 C 0.023 3.977 17 C -0.450 4.450 18 H 0.094 0.906 19 C -0.148 4.148 20 N -0.469 5.469 21 Si 0.728 3.272 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.119 4.119 26 C -0.088 4.088 27 N -0.127 5.127 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.183 0.817 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.191 0.809 42 H 0.081 0.919 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.396 8.820 -6.360 12.616 hybrid contribution 0.067 -0.580 0.573 0.818 sum 6.464 8.240 -5.786 11.965 Atomic orbital electron populations 1.22091 0.93819 1.05180 1.00543 1.21367 0.97865 0.95661 0.97525 1.21797 1.00728 0.95532 1.02220 1.21680 0.99809 0.77233 0.99204 1.48263 1.05014 1.05195 1.57786 1.22363 0.96729 0.86895 1.03539 1.18815 0.92839 0.92432 1.13774 1.17370 0.94432 0.89676 0.93925 1.20542 1.01485 0.96048 1.01920 1.20286 1.00706 0.93633 0.98792 1.19793 1.00399 0.98980 0.98615 1.18146 0.97665 0.93084 0.93619 1.41451 1.35760 1.11910 1.30278 0.77395 1.22687 1.01354 0.91791 1.04708 1.17967 0.94136 0.93509 0.92085 1.18728 1.02688 0.93286 1.30312 0.90610 1.25562 0.97736 0.96256 0.95238 1.69686 1.20934 1.22564 1.33712 0.86451 0.78968 0.82421 0.79381 1.19001 1.20999 1.19849 1.19455 1.01721 0.91975 0.98779 1.23981 0.97229 0.91538 0.96101 1.77001 0.98190 1.11560 1.25933 0.93652 0.88730 0.93203 0.90914 0.92685 0.92254 0.92431 0.90365 0.89326 0.81724 0.87853 0.87671 0.88350 0.80940 0.91934 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.91 37.16 0.33 -1.70 16 2 C -0.10 -1.16 3.12 -90.62 -0.28 -1.44 16 3 C -0.14 -1.21 9.19 37.15 0.34 -0.87 16 4 C 0.14 1.73 5.96 -4.04 -0.02 1.70 16 5 N -0.38 -6.24 3.67 -61.07 -0.22 -6.46 16 6 C 0.05 0.84 11.38 -16.85 -0.19 0.65 16 7 C -0.17 -3.35 4.64 -105.36 -0.49 -3.84 16 8 C 0.05 1.02 5.75 -104.71 -0.60 0.41 16 9 C -0.18 -3.34 9.76 -39.21 -0.38 -3.72 16 10 C -0.11 -2.03 10.00 -39.62 -0.40 -2.43 16 11 C -0.16 -2.96 10.06 -39.33 -0.40 -3.35 16 12 C 0.09 1.89 7.23 -83.92 -0.61 1.28 16 13 N -0.59 -12.76 5.99 -9.81 -0.06 -12.82 16 14 H 0.39 6.94 8.96 -40.82 -0.37 6.58 16 15 C -0.08 -2.04 10.77 -15.60 -0.17 -2.21 16 16 C 0.03 0.74 5.99 -104.83 -0.63 0.12 16 17 C -0.42 -11.10 7.91 -38.02 -0.30 -11.40 16 18 H 0.08 2.02 5.45 -52.49 -0.29 1.74 16 19 C 0.06 1.61 5.47 -17.33 -0.09 1.52 16 20 N -0.84 -22.12 10.79 55.54 0.60 -21.52 16 21 Si 0.90 20.48 29.56 -169.99 -5.02 15.45 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.11 -2.69 6.18 -104.66 -0.65 -3.34 16 26 C 0.10 2.02 9.24 -17.04 -0.16 1.86 16 27 N -0.31 -5.89 9.57 30.82 0.29 -5.60 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.48 5.35 -51.93 -0.28 1.20 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 41 H 0.17 4.46 6.34 -52.49 -0.33 4.13 16 42 H 0.27 6.71 8.30 -40.82 -0.34 6.37 16 43 H 0.18 3.87 7.99 -52.49 -0.42 3.45 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -29.54 352.17 -9.69 -39.22 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.89 Total: 13.17 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -4.69 Total: -26.75 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.61 Total: -46.40 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.54 -9.69 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240887476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.269 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds