Wall clock time and date at job start Tue Mar 31 2020 10:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47070 * 2 1 4 4 C 1.53006 * 109.47200 * 119.99848 * 2 1 3 5 5 N 1.46499 * 109.46572 * 64.99940 * 4 2 1 6 6 C 1.34820 * 125.88044 * 125.29242 * 5 4 2 7 7 C 1.36539 * 107.59551 * 180.15237 * 6 5 4 8 8 C 1.48286 * 126.24096 * 179.83590 * 7 6 5 9 9 C 1.39133 * 120.27829 * 303.39809 * 8 7 6 10 10 C 1.38344 * 120.10981 * 180.22910 * 9 8 7 11 11 C 1.38024 * 120.76089 * 359.51793 * 10 9 8 12 12 C 1.39129 * 120.23267 * 0.44765 * 11 10 9 13 13 N 1.38180 * 132.74213 * 179.81233 * 12 11 10 14 14 H 0.96996 * 124.69666 * 0.02562 * 13 12 11 15 15 C 1.35615 * 110.59579 * 180.02562 * 13 12 11 16 16 C 1.38988 * 109.24510 * 359.97438 * 15 13 12 17 17 C 1.40946 * 126.93195 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00421 * 158.64237 * 17 16 15 19 19 C 1.39677 * 119.99864 * 338.64512 * 17 16 15 20 20 N 1.31082 * 120.00049 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99975 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46975 * 60.00269 * 21 19 17 23 23 H 1.48503 * 109.46978 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47429 * 300.00280 * 21 19 17 25 25 C 1.40160 * 120.27923 * 123.37168 * 8 7 6 26 26 C 1.40924 * 107.52431 * 359.57796 * 7 6 5 27 27 N 1.30657 * 108.08916 * 0.25638 * 26 7 6 28 28 H 1.08994 * 109.47200 * 59.99629 * 1 2 3 29 29 H 1.08999 * 109.46821 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46778 * 299.99803 * 1 2 3 31 31 H 1.08997 * 109.47257 * 240.00170 * 2 1 3 32 32 H 1.09010 * 109.47529 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47665 * 299.99994 * 3 2 1 34 34 H 1.08997 * 109.47625 * 60.00288 * 3 2 1 35 35 H 1.08997 * 109.47129 * 305.00077 * 4 2 1 36 36 H 1.09004 * 109.46874 * 184.99860 * 4 2 1 37 37 H 1.08002 * 126.20281 * 0.02562 * 6 5 4 38 38 H 1.08005 * 119.94330 * 359.95216 * 9 8 7 39 39 H 1.07999 * 119.61355 * 179.74152 * 10 9 8 40 40 H 1.08004 * 119.88426 * 180.25830 * 11 10 9 41 41 H 1.08001 * 125.37503 * 179.97438 * 15 13 12 42 42 H 0.96994 * 120.00347 * 179.97438 * 20 19 17 43 43 H 1.07994 * 125.95843 * 180.29828 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4874 -3.1864 1.2927 7 6 1.7354 -4.3209 1.1848 8 6 2.2389 -5.7147 1.2371 9 6 3.2222 -6.1392 0.3490 10 6 3.6861 -7.4416 0.3978 11 6 3.1915 -8.3327 1.3286 12 6 2.2084 -7.9326 2.2281 13 7 1.5403 -8.5922 3.2420 14 1 1.6847 -9.5198 3.4861 15 6 0.6550 -7.7629 3.8484 16 6 0.7122 -6.5119 3.2455 17 6 -0.0478 -5.3738 3.5827 18 1 0.2998 -4.3901 3.3036 19 6 -1.2506 -5.5181 4.2779 20 7 -1.6724 -6.7119 4.6172 21 14 -2.2576 -4.0097 4.7254 22 1 -2.6436 -3.2870 3.4870 23 1 -3.4806 -4.4298 5.4556 24 1 -1.4488 -3.1132 5.5900 25 6 1.7287 -6.6154 2.1820 26 6 0.3926 -3.9260 1.0206 27 7 0.3504 -2.6201 1.0250 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1264 -0.6443 1.2951 37 1 3.5574 -3.1412 1.4323 38 1 3.6209 -5.4519 -0.3826 39 1 4.4466 -7.7637 -0.2981 40 1 3.5668 -9.3450 1.3568 41 1 0.0078 -8.0321 4.6700 42 1 -2.5074 -6.8122 5.1003 43 1 -0.4541 -4.5874 0.9110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240887476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:04 Heat of formation + Delta-G solvation = 105.337730 kcal Electronic energy + Delta-G solvation = -25140.016203 eV Core-core repulsion = 21765.036029 eV Total energy + Delta-G solvation = -3374.980174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.154 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.04704 -41.12665 -37.53556 -37.04367 -35.31406 -33.30456 -32.45531 -31.00143 -29.50502 -29.04466 -27.95493 -27.19683 -26.21501 -23.50221 -22.47069 -21.79614 -21.49771 -20.99142 -20.76811 -18.73550 -17.75602 -17.33099 -16.85974 -16.25241 -16.06807 -15.88962 -15.72927 -15.04177 -14.76129 -14.56618 -14.46151 -14.29774 -14.17195 -13.75913 -13.50987 -13.17532 -13.10406 -13.00232 -12.93804 -12.82500 -12.49838 -12.40473 -11.99704 -11.96776 -11.81047 -11.72634 -11.61027 -11.39148 -11.16465 -10.93913 -10.11778 -9.94452 -9.13540 -8.63243 -8.33642 -8.07796 -5.85980 0.52589 1.11117 1.17353 1.34740 1.36708 1.45913 1.79082 2.08993 2.30356 2.40283 2.96418 3.23591 3.60310 3.72767 3.83706 4.06639 4.11693 4.22071 4.39101 4.47866 4.50115 4.53930 4.58963 4.72127 4.81431 4.85001 4.91842 4.97191 5.04300 5.06639 5.10783 5.23994 5.25529 5.35958 5.41624 5.47335 5.52939 5.57644 5.75337 5.86935 5.99940 6.09285 6.16903 6.35860 6.37621 6.67781 6.90219 6.94780 7.25579 7.32292 7.47870 8.69259 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.005783 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.822776 B = 4840.288879 C = 7080.112652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.098 4.098 3 C -0.138 4.138 4 C 0.130 3.870 5 N -0.370 5.370 6 C 0.066 3.934 7 C -0.197 4.197 8 C 0.032 3.968 9 C -0.170 4.170 10 C -0.101 4.101 11 C -0.159 4.159 12 C 0.075 3.925 13 N -0.589 5.589 14 H 0.409 0.591 15 C -0.093 4.093 16 C -0.009 4.009 17 C -0.430 4.430 18 H 0.066 0.934 19 C 0.022 3.978 20 N -0.864 5.864 21 Si 0.956 3.044 22 H -0.272 1.272 23 H -0.274 1.274 24 H -0.273 1.273 25 C -0.150 4.150 26 C 0.075 3.925 27 N -0.320 5.320 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.204 0.796 38 H 0.133 0.867 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.158 0.842 42 H 0.272 0.728 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.477 9.102 -8.082 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.117 4.117 3 C -0.196 4.196 4 C 0.010 3.990 5 N -0.152 5.152 6 C -0.081 4.081 7 C -0.208 4.208 8 C 0.031 3.969 9 C -0.191 4.191 10 C -0.120 4.120 11 C -0.181 4.181 12 C -0.035 4.035 13 N -0.193 5.193 14 H 0.245 0.755 15 C -0.217 4.217 16 C -0.015 4.015 17 C -0.464 4.464 18 H 0.084 0.916 19 C -0.185 4.185 20 N -0.497 5.497 21 Si 0.781 3.219 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.157 4.157 26 C -0.110 4.110 27 N -0.142 5.142 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.145 0.855 37 H 0.221 0.779 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.148 0.852 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.502 10.129 -7.929 15.992 hybrid contribution -0.738 -0.945 0.905 1.502 sum 8.764 9.184 -7.023 14.508 Atomic orbital electron populations 1.22063 0.95567 1.03146 1.00976 1.21314 0.96297 0.97422 0.96684 1.21745 1.01868 0.93214 1.02725 1.22171 1.02228 0.74800 0.99783 1.48650 1.03926 1.06832 1.55771 1.22838 0.98116 0.85901 1.01247 1.18908 0.92821 0.93094 1.15975 1.17662 0.95200 0.90096 0.93982 1.20945 1.00001 0.97114 1.01005 1.20841 1.00276 0.92716 0.98186 1.20214 0.99213 1.00911 0.97727 1.18583 0.98296 0.92645 0.94022 1.41263 1.35344 1.12435 1.30269 0.75497 1.22432 1.02053 0.92402 1.04824 1.18314 0.95592 0.93910 0.93659 1.18804 1.03423 0.93215 1.30972 0.91591 1.26165 0.98500 0.98426 0.95382 1.69768 1.21395 1.23712 1.34795 0.85616 0.78016 0.79593 0.78645 1.19733 1.19840 1.19876 1.19715 1.02356 0.93888 0.99698 1.23696 0.97287 0.92042 0.97986 1.76993 1.00141 1.10852 1.26210 0.92562 0.91897 0.93469 0.91407 0.90797 0.91692 0.92055 0.90289 0.85490 0.77947 0.84929 0.83208 0.85164 0.82540 0.91782 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 8.91 71.98 0.64 -3.34 16 2 C -0.10 -1.94 3.12 -10.79 -0.03 -1.97 16 3 C -0.14 -1.84 9.19 71.98 0.66 -1.18 16 4 C 0.13 2.80 5.96 86.38 0.51 3.31 16 5 N -0.37 -11.65 3.67 -347.13 -1.27 -12.93 16 6 C 0.07 2.10 11.38 83.84 0.95 3.06 16 7 C -0.20 -7.89 4.64 -20.34 -0.09 -7.98 16 8 C 0.03 1.36 5.75 -19.92 -0.11 1.25 16 9 C -0.17 -5.80 9.76 22.51 0.22 -5.58 16 10 C -0.10 -3.13 10.00 22.24 0.22 -2.91 16 11 C -0.16 -5.55 10.06 22.43 0.23 -5.32 16 12 C 0.07 3.26 7.23 38.85 0.28 3.54 16 13 N -0.59 -25.82 5.99 -184.93 -1.11 -26.93 16 14 H 0.41 14.53 8.96 -92.71 -0.83 13.69 16 15 C -0.09 -4.85 10.77 84.29 0.91 -3.94 16 16 C -0.01 -0.50 5.99 -20.00 -0.12 -0.62 16 17 C -0.43 -24.20 7.91 23.28 0.18 -24.01 16 18 H 0.07 3.73 5.45 -2.91 -0.02 3.71 16 19 C 0.02 1.20 5.47 85.15 0.47 1.66 16 20 N -0.86 -47.96 10.79 21.79 0.24 -47.72 16 21 Si 0.96 43.97 29.56 68.60 2.03 45.99 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 25 C -0.15 -7.32 6.18 -19.89 -0.12 -7.45 16 26 C 0.08 3.25 9.24 85.53 0.79 4.04 16 27 N -0.32 -12.63 9.57 -56.42 -0.54 -13.17 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 2.00 5.35 -2.39 -0.01 1.99 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.13 1.80 8.07 -2.39 -0.02 1.78 16 37 H 0.20 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 39 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 41 H 0.16 8.61 6.34 -2.91 -0.02 8.60 16 42 H 0.27 14.13 8.30 -92.71 -0.77 13.36 16 43 H 0.16 7.30 7.99 -2.91 -0.02 7.28 16 Total: -1.00 -68.60 352.17 5.13 -63.48 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: 0.20 Total: 38.72 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 5.58 Total: -47.44 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -2.69 Total: -100.74 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.60 5.13 -63.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240887476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.816 kcal (2) G-P(sol) polarization free energy of solvation -68.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds