Wall clock time and date at job start Tue Mar 31 2020 09:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46938 * 60.00454 * 9 7 5 11 11 H 1.48501 * 109.47358 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47398 * 300.00402 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46505 * 109.47212 * 295.00240 * 13 2 1 15 15 C 1.40003 * 120.00071 * 179.97438 * 14 13 2 16 16 C 1.38877 * 119.99006 * 359.72623 * 15 14 13 17 17 C 1.38075 * 119.99827 * 179.76412 * 16 15 14 18 18 C 1.38915 * 119.99744 * 0.53355 * 17 16 15 19 19 S 1.76202 * 120.00576 * 179.70028 * 18 17 16 20 20 C 1.81398 * 102.99893 * 0.02562 * 19 18 17 21 21 C 1.53001 * 109.46915 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47195 * 180.02562 * 21 20 19 23 23 O 1.42899 * 109.47436 * 180.02562 * 22 21 20 24 24 C 1.38918 * 119.98749 * 359.71989 * 18 17 16 25 25 C 1.38074 * 119.99479 * 0.02562 * 24 18 17 26 26 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 30 30 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 31 31 H 0.97000 * 120.00592 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 14 13 2 35 35 H 1.07998 * 120.00319 * 0.02562 * 16 15 14 36 36 H 1.08004 * 119.99613 * 180.25532 * 17 16 15 37 37 H 1.08995 * 109.47244 * 299.99975 * 20 19 18 38 38 H 1.09002 * 109.47565 * 60.00154 * 20 19 18 39 39 H 1.08995 * 109.47236 * 300.00092 * 21 20 19 40 40 H 1.09004 * 109.46970 * 60.00290 * 21 20 19 41 41 H 1.09012 * 109.47007 * 300.00219 * 22 21 20 42 42 H 1.08994 * 109.47290 * 59.99883 * 22 21 20 43 43 H 0.96695 * 114.00360 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.99853 * 179.97438 * 24 18 17 45 45 H 1.07993 * 119.99302 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6765 -1.5186 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.0917 1.9237 -5.1865 11 1 1.9945 -0.1367 -6.4621 12 1 0.0196 0.6699 -5.3096 13 6 2.0400 -0.7212 1.2492 14 7 1.6524 0.0355 2.4424 15 6 2.0089 -0.4308 3.7135 16 6 2.7250 -1.6136 3.8433 17 6 3.0808 -2.0712 5.0965 18 6 2.7129 -1.3541 6.2280 19 16 3.1601 -1.9419 7.8278 20 6 4.0639 -3.4717 7.4624 21 6 4.5283 -4.1144 8.7709 22 6 5.2912 -5.4044 8.4628 23 8 5.7244 -6.0051 9.6849 24 6 1.9921 -0.1737 6.0980 25 6 1.6410 0.2862 4.8443 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1264 -0.7993 -1.2056 30 1 1.6055 -1.7198 -1.2951 31 1 2.9239 -1.8416 -4.7317 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 1.1482 0.8591 2.3517 35 1 3.0072 -2.1734 2.9639 36 1 3.6413 -2.9889 5.1972 37 1 3.4095 -4.1621 6.9303 38 1 4.9309 -3.2424 6.8429 39 1 5.1828 -3.4239 9.3027 40 1 3.6615 -4.3437 9.3908 41 1 4.6369 -6.0953 7.9308 42 1 6.1579 -5.1748 7.8432 43 1 6.2158 -6.8293 9.5655 44 1 1.7056 0.3837 6.9775 45 1 1.0802 1.2036 4.7433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602494708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:41 Heat of formation + Delta-G solvation = -53.779088 kcal Electronic energy + Delta-G solvation = -21714.245461 eV Core-core repulsion = 18435.516664 eV Total energy + Delta-G solvation = -3278.728796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.35268 -37.60101 -36.70035 -34.06355 -33.82024 -32.14108 -30.99736 -29.12988 -26.95142 -26.72204 -25.77072 -23.30705 -22.60257 -22.08933 -21.23266 -19.34156 -18.02099 -17.44570 -16.85913 -16.56157 -16.29867 -15.78178 -15.21083 -14.64945 -14.58908 -14.31705 -14.21549 -13.87980 -13.78599 -13.49013 -13.29088 -12.78904 -12.52633 -12.46008 -12.14289 -12.02973 -11.77611 -11.60249 -11.33046 -11.11338 -10.99024 -10.94719 -10.49274 -10.44256 -10.43521 -10.35189 -10.27025 -9.86246 -9.36381 -9.11619 -8.98546 -8.41678 -8.32397 -6.84759 -6.06261 -4.08401 1.39089 1.40041 1.49163 2.36420 3.28690 3.33726 3.35465 3.65425 3.74527 3.82355 4.39598 4.40716 4.63875 4.74669 4.80862 4.85321 4.93616 5.04839 5.17418 5.29516 5.33990 5.42359 5.53133 5.56106 5.60442 5.68374 5.69518 5.84159 5.97757 6.10149 6.19462 6.29065 6.33357 6.36677 6.39964 6.72895 6.83016 6.94187 6.98739 7.14423 7.47932 7.56124 7.69597 7.90005 7.91860 8.34156 8.96934 9.55507 11.05039 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.002015 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.694974 B =13890.837177 C =15016.308028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.062 0.938 4 C 0.031 3.969 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.125 3.875 14 N -0.739 5.739 15 C 0.226 3.774 16 C -0.182 4.182 17 C -0.079 4.079 18 C -0.154 4.154 19 S -0.130 6.130 20 C -0.104 4.104 21 C -0.105 4.105 22 C 0.080 3.920 23 O -0.575 6.575 24 C -0.047 4.047 25 C -0.187 4.187 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.399 0.601 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.382 0.618 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -4.480 23.678 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.001 3.999 14 N -0.366 5.366 15 C 0.119 3.881 16 C -0.207 4.207 17 C -0.102 4.102 18 C -0.268 4.268 19 S 0.111 5.889 20 C -0.253 4.253 21 C -0.143 4.143 22 C 0.001 3.999 23 O -0.381 6.381 24 C -0.071 4.071 25 C -0.211 4.211 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.229 0.771 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.176 -3.775 24.719 25.101 hybrid contribution 0.111 -0.244 -2.663 2.677 sum 2.287 -4.020 22.056 22.536 Atomic orbital electron populations 1.21723 0.95866 1.01128 1.00221 1.21445 0.95684 0.99832 0.94554 0.91933 1.19074 0.96244 0.95539 0.89836 1.21146 1.35149 1.08400 0.90912 0.92595 1.25016 0.95201 0.95088 0.99154 1.69941 1.38682 1.21108 1.23671 0.86664 0.78887 0.80099 0.82387 1.20265 1.21296 1.20263 1.21655 0.99088 0.95196 0.83927 1.45136 1.60881 1.27986 1.02563 1.17983 0.92131 0.92367 0.85648 1.20608 1.04918 0.97633 0.97515 1.20850 0.99116 0.98742 0.91531 1.21172 1.09102 1.01128 0.95389 1.85227 1.68981 1.26679 1.08059 1.23441 1.02763 0.97762 1.01284 1.21180 1.01242 0.95979 0.95940 1.22123 0.97509 0.94128 0.86164 1.86454 1.77054 1.43079 1.31465 1.20390 0.95990 0.93868 0.96850 1.20498 1.07500 1.02142 0.90992 0.95077 0.91725 0.93464 0.96464 0.96319 0.92904 0.92504 0.92571 0.76636 0.85549 0.86407 0.89332 0.89328 0.90132 0.90133 0.93275 0.93259 0.77074 0.85959 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.88 37.16 0.33 -1.98 16 2 C -0.10 -1.81 2.37 -90.62 -0.22 -2.03 16 3 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 4 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 5 C -0.52 -13.95 8.41 -34.44 -0.29 -14.24 16 6 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.12 2.01 4.30 -4.04 -0.02 1.99 16 14 N -0.74 -10.29 5.47 -58.56 -0.32 -10.61 16 15 C 0.23 3.08 6.66 -83.66 -0.56 2.53 16 16 C -0.18 -2.45 9.31 -39.40 -0.37 -2.81 16 17 C -0.08 -0.96 9.36 -39.39 -0.37 -1.32 16 18 C -0.15 -1.87 6.11 -39.08 -0.24 -2.11 16 19 S -0.13 -1.38 21.92 -107.50 -2.36 -3.73 16 20 C -0.10 -0.83 4.33 37.16 0.16 -0.66 16 21 C -0.10 -0.78 5.59 -26.73 -0.15 -0.93 16 22 C 0.08 0.50 7.05 37.16 0.26 0.76 16 23 O -0.57 -4.12 13.66 -35.23 -0.48 -4.60 16 24 C -0.05 -0.57 9.78 -39.39 -0.39 -0.95 16 25 C -0.19 -2.29 9.89 -39.41 -0.39 -2.68 16 26 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 27 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 28 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 33 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 34 H 0.40 5.09 7.67 -40.82 -0.31 4.77 16 35 H 0.13 1.68 6.73 -52.49 -0.35 1.32 16 36 H 0.12 1.19 5.87 -52.48 -0.31 0.88 16 37 H 0.09 0.66 7.74 -51.93 -0.40 0.26 16 38 H 0.09 0.66 7.75 -51.92 -0.40 0.26 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.38 0.99 9.12 45.56 0.42 1.41 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -30.61 378.65 -10.84 -41.45 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.66 Total: 3.43 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -2.45 Total: -22.34 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.42 Total: -36.06 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.48 Total: -4.60 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.36 Total: -3.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.61 -10.84 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602494708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.333 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds