Wall clock time and date at job start Tue Mar 31 2020 09:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47065 * 2 1 4 4 C 1.50699 * 109.47506 * 120.00054 * 2 1 3 5 5 N 1.31260 * 120.05702 * 67.13160 * 4 2 1 6 6 C 1.32583 * 122.77831 * 179.70019 * 5 4 2 7 7 C 1.36203 * 121.87198 * 0.59098 * 6 5 4 8 8 C 1.40657 * 118.66742 * 359.71509 * 7 6 5 9 9 C 1.40228 * 122.22807 * 179.97438 * 8 7 6 10 10 C 1.36214 * 119.48507 * 180.02562 * 9 8 7 11 11 C 1.39379 * 121.01748 * 0.04431 * 10 9 8 12 12 C 1.36164 * 121.09662 * 359.97373 * 11 10 9 13 13 C 1.40387 * 119.51489 * 359.97438 * 12 11 10 14 14 N 1.46901 * 109.47336 * 240.00027 * 2 1 3 15 15 C 1.46903 * 110.99717 * 295.90499 * 14 2 1 16 16 C 1.50709 * 109.47065 * 158.84436 * 15 14 2 17 17 H 1.08003 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00062 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99808 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00035 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47024 * 90.00688 * 20 18 16 22 22 H 1.48498 * 109.47633 * 210.00627 * 20 18 16 23 23 H 1.48505 * 109.47405 * 330.00679 * 20 18 16 24 24 C 1.46896 * 111.00252 * 171.94837 * 14 2 1 25 25 C 1.52999 * 109.47447 * 287.34370 * 24 14 2 26 26 C 1.47198 * 109.47340 * 179.07091 * 25 24 14 27 27 N 5.36880 * 154.99651 * 300.49011 * 2 1 3 28 28 H 1.08997 * 109.46950 * 60.00491 * 1 2 3 29 29 H 1.09004 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47292 * 299.99795 * 1 2 3 31 31 H 1.08004 * 119.06624 * 180.30732 * 6 5 4 32 32 H 1.08001 * 120.66774 * 179.69738 * 7 6 5 33 33 H 1.08002 * 120.25820 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.49184 * 180.02562 * 10 9 8 35 35 H 1.08006 * 119.45044 * 179.97438 * 11 10 9 36 36 H 1.07991 * 120.24490 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.47064 * 278.84071 * 15 14 2 38 38 H 1.08998 * 109.47296 * 38.84454 * 15 14 2 39 39 H 0.97002 * 119.99546 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.47437 * 167.34455 * 24 14 2 41 41 H 1.09004 * 109.46981 * 47.34891 * 24 14 2 42 42 H 1.08998 * 109.47545 * 299.07449 * 25 24 14 43 43 H 1.09005 * 109.46745 * 59.07505 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.8354 -2.0005 1.3713 6 6 2.2589 -2.6801 2.4279 7 6 2.9227 -2.0764 3.4526 8 6 3.1667 -0.6932 3.3765 9 6 3.8424 0.0038 4.3884 10 6 4.0479 1.3439 4.2572 11 6 3.5962 2.0331 3.1331 12 6 2.9363 1.3890 2.1314 13 6 2.7068 0.0075 2.2308 14 7 2.0197 -0.6925 -1.1994 15 6 1.6303 -2.1089 -1.1854 16 6 1.6702 -2.6548 -2.5895 17 1 1.9559 -2.0136 -3.4103 18 6 1.3411 -3.9725 -2.8265 19 7 1.3765 -4.4490 -4.0518 20 14 0.8464 -5.0814 -1.4070 21 1 -0.6239 -5.0085 -1.2111 22 1 1.2361 -6.4813 -1.7132 23 1 1.5335 -4.6361 -0.1681 24 6 3.4754 -0.5480 -1.3333 25 6 3.8091 0.8841 -1.7561 26 6 5.2690 1.0349 -1.8686 27 7 6.3956 1.1514 -1.9554 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.0682 -3.7419 2.4798 32 1 3.2549 -2.6481 4.3065 33 1 4.1971 -0.5179 5.2650 34 1 4.5687 1.8807 5.0363 35 1 3.7726 3.0958 3.0554 36 1 2.5926 1.9365 1.2663 37 1 2.3227 -2.6698 -0.5577 38 1 0.6201 -2.2041 -0.7872 39 1 1.1452 -5.3762 -4.2184 40 1 3.8418 -1.2442 -2.0877 41 1 3.9515 -0.7649 -0.3770 42 1 3.3466 1.0955 -2.7202 43 1 3.4283 1.5813 -1.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462024941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:06 Heat of formation + Delta-G solvation = 99.859410 kcal Electronic energy + Delta-G solvation = -25679.725641 eV Core-core repulsion = 22304.507909 eV Total energy + Delta-G solvation = -3375.217731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.08445 -38.24754 -37.06824 -36.22993 -33.39455 -32.51580 -31.61857 -31.28940 -29.83433 -29.13308 -26.97573 -24.41608 -23.69172 -23.23649 -22.63999 -21.47951 -19.29949 -17.79575 -17.70331 -17.17837 -16.70655 -16.20818 -15.25946 -15.11959 -14.91707 -14.54749 -14.34184 -14.06630 -13.90283 -13.69918 -13.56002 -13.23473 -12.81584 -12.78880 -12.44640 -12.24023 -12.03118 -11.86604 -11.77622 -11.60753 -11.48973 -11.38567 -11.02520 -10.82839 -10.64965 -10.30336 -10.06996 -9.93840 -9.81196 -9.43070 -9.14027 -9.03151 -8.45296 -8.04021 -7.43776 -5.96201 -3.91848 0.34930 0.90549 1.88983 2.92772 2.97976 3.05594 3.37825 3.44958 3.54335 4.04784 4.12283 4.35549 4.46154 4.53504 4.60843 4.73072 4.78843 4.92902 5.06461 5.09135 5.23266 5.31371 5.36084 5.39172 5.41495 5.55929 5.65144 5.70525 5.73946 5.79724 5.94926 6.02360 6.05978 6.16491 6.26860 6.30070 6.35150 6.44638 6.57698 6.68025 6.80222 6.98987 7.26913 7.70652 7.77162 7.83979 7.99760 8.21688 8.72368 9.13409 9.67160 11.16845 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.005837 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.741259 B = 4796.100709 C = 6131.815559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.120 3.880 3 H 0.091 0.909 4 C 0.149 3.851 5 N -0.458 5.458 6 C 0.087 3.913 7 C -0.172 4.172 8 C -0.024 4.024 9 C -0.115 4.115 10 C -0.102 4.102 11 C -0.127 4.127 12 C -0.085 4.085 13 C -0.105 4.105 14 N -0.502 5.502 15 C 0.167 3.833 16 C -0.509 4.509 17 H 0.078 0.922 18 C 0.068 3.932 19 N -0.905 5.905 20 Si 0.867 3.133 21 H -0.279 1.279 22 H -0.293 1.293 23 H -0.254 1.254 24 C 0.062 3.938 25 C -0.027 4.027 26 C 0.217 3.783 27 N -0.453 5.453 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.149 0.851 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.014 0.986 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.097 0.903 41 H 0.027 0.973 42 H 0.121 0.879 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 12.199 17.047 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 H 0.109 0.891 4 C -0.005 4.005 5 N -0.166 5.166 6 C -0.057 4.057 7 C -0.192 4.192 8 C -0.029 4.029 9 C -0.133 4.133 10 C -0.122 4.122 11 C -0.145 4.145 12 C -0.104 4.104 13 C -0.108 4.108 14 N -0.224 5.224 15 C 0.042 3.958 16 C -0.547 4.547 17 H 0.096 0.904 18 C -0.132 4.132 19 N -0.544 5.544 20 Si 0.694 3.306 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.178 1.178 24 C -0.068 4.068 25 C -0.067 4.067 26 C -0.101 4.101 27 N -0.130 5.130 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.167 0.833 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.032 0.968 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.045 0.955 42 H 0.139 0.861 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.045 11.821 15.810 19.847 hybrid contribution 0.228 -0.901 2.228 2.414 sum 2.273 10.920 18.038 21.208 Atomic orbital electron populations 1.21823 0.92712 1.03698 1.01348 1.21068 0.96943 0.96719 0.84291 0.89121 1.22973 0.92259 0.90156 0.95100 1.67754 1.18645 1.08243 1.21964 1.22337 0.94067 1.00366 0.88912 1.21833 1.02295 0.93983 1.01085 1.18167 0.96860 0.93803 0.94099 1.20930 0.99406 0.94662 0.98290 1.20935 0.98904 0.94464 0.97847 1.20885 0.99094 1.00271 0.94248 1.21106 0.97423 0.92911 0.98993 1.18937 1.01188 0.94978 0.95687 1.62369 1.09874 1.18226 1.31974 1.20393 0.96712 0.81663 0.97058 1.21170 1.45321 0.95678 0.92552 0.90366 1.24839 0.95364 0.97844 0.95198 1.69906 1.49793 1.15209 1.19518 0.86951 0.79418 0.79812 0.84376 1.20466 1.21972 1.17835 1.21931 0.90036 0.94080 1.00724 1.19402 0.81483 1.00182 1.05643 1.29311 0.95394 0.92756 0.92589 1.81164 1.13025 1.09178 1.09631 0.90836 0.90947 0.93262 0.83346 0.84978 0.85528 0.85918 0.85743 0.84785 0.96796 0.94329 0.92921 0.88440 0.95467 0.86148 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.10 37.16 0.34 -1.62 16 2 C 0.12 1.74 2.49 -68.86 -0.17 1.57 16 3 H 0.09 1.03 4.01 -51.93 -0.21 0.82 16 4 C 0.15 2.31 4.40 -82.03 -0.36 1.95 16 5 N -0.46 -8.07 6.71 -9.39 -0.06 -8.13 16 6 C 0.09 1.32 11.07 -17.96 -0.20 1.12 16 7 C -0.17 -2.21 9.88 -39.40 -0.39 -2.60 16 8 C -0.02 -0.31 5.75 -106.81 -0.61 -0.93 16 9 C -0.11 -1.20 9.81 -39.56 -0.39 -1.59 16 10 C -0.10 -0.95 9.95 -39.89 -0.40 -1.34 16 11 C -0.13 -1.19 9.94 -39.90 -0.40 -1.59 16 12 C -0.08 -0.92 9.38 -39.52 -0.37 -1.29 16 13 C -0.11 -1.43 5.74 -106.86 -0.61 -2.04 16 14 N -0.50 -9.00 4.33 -229.47 -0.99 -9.99 16 15 C 0.17 3.75 2.11 -4.97 -0.01 3.74 16 16 C -0.51 -13.79 9.15 -34.44 -0.32 -14.10 16 17 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 20 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.25 -5.99 6.54 56.52 0.37 -5.62 16 24 C 0.06 1.03 4.63 -3.83 -0.02 1.01 16 25 C -0.03 -0.33 5.78 -29.52 -0.17 -0.50 16 26 C 0.22 3.14 15.43 -20.76 -0.32 2.82 16 27 N -0.45 -7.68 18.54 42.15 0.78 -6.90 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.22 6.16 -51.93 -0.32 0.90 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.15 2.06 8.06 -52.48 -0.42 1.64 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.13 1.16 6.06 -52.49 -0.32 0.84 16 37 H 0.01 0.34 5.38 -51.93 -0.28 0.06 16 38 H 0.04 0.90 4.94 -51.93 -0.26 0.64 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.10 1.89 7.40 -51.93 -0.38 1.51 16 41 H 0.03 0.46 7.04 -51.93 -0.37 0.10 16 42 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.10 0.91 6.63 -51.93 -0.34 0.57 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -33.32 350.54 -8.83 -42.15 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.45 Total: 1.18 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -4.49 Total: -13.54 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.50 Total: -51.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.32 -8.83 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462024941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.011 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds