Wall clock time and date at job start Tue Mar 31 2020 09:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47065 * 2 1 4 4 C 1.50699 * 109.47506 * 120.00054 * 2 1 3 5 5 N 1.31260 * 120.05702 * 67.13160 * 4 2 1 6 6 C 1.32583 * 122.77831 * 179.70019 * 5 4 2 7 7 C 1.36203 * 121.87198 * 0.59098 * 6 5 4 8 8 C 1.40657 * 118.66742 * 359.71509 * 7 6 5 9 9 C 1.40228 * 122.22807 * 179.97438 * 8 7 6 10 10 C 1.36214 * 119.48507 * 180.02562 * 9 8 7 11 11 C 1.39379 * 121.01748 * 0.04431 * 10 9 8 12 12 C 1.36164 * 121.09662 * 359.97373 * 11 10 9 13 13 C 1.40387 * 119.51489 * 359.97438 * 12 11 10 14 14 N 1.46901 * 109.47336 * 240.00027 * 2 1 3 15 15 C 1.46903 * 110.99717 * 295.90499 * 14 2 1 16 16 C 1.50709 * 109.47065 * 158.84436 * 15 14 2 17 17 H 1.08003 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00062 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99808 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00035 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47024 * 90.00688 * 20 18 16 22 22 H 1.48498 * 109.47633 * 210.00627 * 20 18 16 23 23 H 1.48505 * 109.47405 * 330.00679 * 20 18 16 24 24 C 1.46896 * 111.00252 * 171.94837 * 14 2 1 25 25 C 1.52999 * 109.47447 * 287.34370 * 24 14 2 26 26 C 1.47198 * 109.47340 * 179.07091 * 25 24 14 27 27 N 5.36880 * 154.99651 * 300.49011 * 2 1 3 28 28 H 1.08997 * 109.46950 * 60.00491 * 1 2 3 29 29 H 1.09004 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47292 * 299.99795 * 1 2 3 31 31 H 1.08004 * 119.06624 * 180.30732 * 6 5 4 32 32 H 1.08001 * 120.66774 * 179.69738 * 7 6 5 33 33 H 1.08002 * 120.25820 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.49184 * 180.02562 * 10 9 8 35 35 H 1.08006 * 119.45044 * 179.97438 * 11 10 9 36 36 H 1.07991 * 120.24490 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.47064 * 278.84071 * 15 14 2 38 38 H 1.08998 * 109.47296 * 38.84454 * 15 14 2 39 39 H 0.97002 * 119.99546 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.47437 * 167.34455 * 24 14 2 41 41 H 1.09004 * 109.46981 * 47.34891 * 24 14 2 42 42 H 1.08998 * 109.47545 * 299.07449 * 25 24 14 43 43 H 1.09005 * 109.46745 * 59.07505 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.8354 -2.0005 1.3713 6 6 2.2589 -2.6801 2.4279 7 6 2.9227 -2.0764 3.4526 8 6 3.1667 -0.6932 3.3765 9 6 3.8424 0.0038 4.3884 10 6 4.0479 1.3439 4.2572 11 6 3.5962 2.0331 3.1331 12 6 2.9363 1.3890 2.1314 13 6 2.7068 0.0075 2.2308 14 7 2.0197 -0.6925 -1.1994 15 6 1.6303 -2.1089 -1.1854 16 6 1.6702 -2.6548 -2.5895 17 1 1.9559 -2.0136 -3.4103 18 6 1.3411 -3.9725 -2.8265 19 7 1.3765 -4.4490 -4.0518 20 14 0.8464 -5.0814 -1.4070 21 1 -0.6239 -5.0085 -1.2111 22 1 1.2361 -6.4813 -1.7132 23 1 1.5335 -4.6361 -0.1681 24 6 3.4754 -0.5480 -1.3333 25 6 3.8091 0.8841 -1.7561 26 6 5.2690 1.0349 -1.8686 27 7 6.3956 1.1514 -1.9554 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.0682 -3.7419 2.4798 32 1 3.2549 -2.6481 4.3065 33 1 4.1971 -0.5179 5.2650 34 1 4.5687 1.8807 5.0363 35 1 3.7726 3.0958 3.0554 36 1 2.5926 1.9365 1.2663 37 1 2.3227 -2.6698 -0.5577 38 1 0.6201 -2.2041 -0.7872 39 1 1.1452 -5.3762 -4.2184 40 1 3.8418 -1.2442 -2.0877 41 1 3.9515 -0.7649 -0.3770 42 1 3.3466 1.0955 -2.7202 43 1 3.4283 1.5813 -1.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462024941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:05 Heat of formation + Delta-G solvation = 79.198312 kcal Electronic energy + Delta-G solvation = -25680.621573 eV Core-core repulsion = 22304.507909 eV Total energy + Delta-G solvation = -3376.113664 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.06178 -39.40706 -38.07984 -37.44703 -34.86527 -34.19000 -32.73636 -32.27734 -31.15557 -30.13090 -28.64073 -25.49168 -24.71436 -24.38642 -23.92045 -22.82096 -20.53864 -19.11265 -18.73521 -18.32347 -18.25485 -17.19732 -16.51775 -16.45425 -16.20335 -15.67039 -15.49631 -15.28991 -15.07150 -14.95049 -14.59839 -14.41409 -14.31882 -14.05710 -13.70847 -13.52730 -13.31240 -13.06422 -12.87502 -12.80094 -12.64667 -12.58874 -12.46481 -12.18084 -11.95225 -11.85455 -11.73161 -11.32364 -11.26297 -10.98733 -10.63969 -10.37499 -9.96826 -8.96920 -8.87537 -8.18498 -6.16466 -0.53433 0.01416 1.00857 1.38100 1.39681 1.56701 1.73664 1.82564 2.18371 2.43514 2.87513 3.14345 3.19043 3.32704 3.58442 3.58875 3.78357 3.90227 4.07190 4.10537 4.23462 4.25727 4.31066 4.37285 4.50726 4.51125 4.59837 4.71382 4.83035 4.89702 4.92240 5.05444 5.09800 5.10744 5.17335 5.21601 5.31537 5.41975 5.49381 5.52379 5.54402 5.74570 5.79714 5.99769 6.06146 6.41996 6.59975 6.72906 6.91786 7.17524 7.46507 8.97853 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.005837 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.741259 B = 4796.100709 C = 6131.815559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.120 3.880 3 H 0.132 0.868 4 C 0.133 3.867 5 N -0.502 5.502 6 C 0.050 3.950 7 C -0.158 4.158 8 C -0.048 4.048 9 C -0.122 4.122 10 C -0.099 4.099 11 C -0.117 4.117 12 C -0.099 4.099 13 C -0.116 4.116 14 N -0.508 5.508 15 C 0.188 3.812 16 C -0.503 4.503 17 H 0.044 0.956 18 C 0.009 3.991 19 N -0.953 5.953 20 Si 0.930 3.070 21 H -0.273 1.273 22 H -0.295 1.295 23 H -0.242 1.242 24 C 0.069 3.931 25 C -0.013 4.013 26 C 0.240 3.760 27 N -0.497 5.497 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.002 0.998 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.056 0.944 41 H 0.021 0.979 42 H 0.136 0.864 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 15.302 20.201 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.149 0.851 4 C -0.021 4.021 5 N -0.211 5.211 6 C -0.093 4.093 7 C -0.178 4.178 8 C -0.053 4.053 9 C -0.140 4.140 10 C -0.118 4.118 11 C -0.135 4.135 12 C -0.119 4.119 13 C -0.119 4.119 14 N -0.230 5.230 15 C 0.061 3.939 16 C -0.542 4.542 17 H 0.062 0.938 18 C -0.187 4.187 19 N -0.595 5.595 20 Si 0.756 3.244 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.165 1.165 24 C -0.061 4.061 25 C -0.053 4.053 26 C -0.077 4.077 27 N -0.175 5.175 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.020 0.980 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.154 0.846 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.409 14.947 18.989 24.285 hybrid contribution 0.173 -1.714 1.343 2.185 sum 2.582 13.232 20.332 24.396 Atomic orbital electron populations 1.21800 0.92634 1.01955 1.02905 1.21256 0.97062 0.97944 0.82660 0.85096 1.22964 0.93243 0.89851 0.95995 1.67562 1.20228 1.09757 1.23567 1.22414 0.96374 1.00605 0.89864 1.22102 1.00392 0.94508 1.00784 1.18509 0.97786 0.93999 0.95032 1.21223 0.99010 0.95471 0.98318 1.21400 0.97806 0.94117 0.98477 1.21349 0.96967 1.01867 0.93275 1.21375 0.98182 0.91733 1.00574 1.19102 1.01058 0.96334 0.95364 1.62190 1.10640 1.15454 1.34755 1.19936 0.96209 0.84435 0.93295 1.21543 1.43269 0.95223 0.94170 0.93757 1.25644 0.95934 0.99647 0.97451 1.70056 1.52094 1.15622 1.21744 0.85940 0.79291 0.77511 0.81686 1.19845 1.22175 1.16536 1.21769 0.89120 0.96054 0.99199 1.19431 0.80184 0.97955 1.07724 1.29581 0.95525 0.91444 0.91169 1.81189 1.14396 1.10597 1.11308 0.90138 0.94290 0.90767 0.83508 0.82369 0.83432 0.82789 0.82514 0.82588 0.98028 0.94765 0.93040 0.92502 0.96049 0.84647 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.10 71.98 0.65 -2.99 16 2 C 0.12 3.26 2.49 44.17 0.11 3.37 16 3 H 0.13 2.41 4.01 -2.38 -0.01 2.40 16 4 C 0.13 3.97 4.40 43.17 0.19 4.16 16 5 N -0.50 -17.84 6.71 -183.63 -1.23 -19.08 16 6 C 0.05 1.55 11.07 84.11 0.93 2.48 16 7 C -0.16 -3.89 9.88 22.39 0.22 -3.67 16 8 C -0.05 -1.15 5.75 -21.28 -0.12 -1.27 16 9 C -0.12 -2.11 9.81 22.28 0.22 -1.89 16 10 C -0.10 -1.34 9.95 22.07 0.22 -1.12 16 11 C -0.12 -1.57 9.94 22.06 0.22 -1.35 16 12 C -0.10 -1.72 9.38 22.31 0.21 -1.51 16 13 C -0.12 -2.87 5.74 -21.31 -0.12 -2.99 16 14 N -0.51 -18.05 4.33 -879.90 -3.81 -21.86 16 15 C 0.19 8.66 2.11 85.56 0.18 8.84 16 16 C -0.50 -28.46 9.15 25.60 0.23 -28.22 16 17 H 0.04 2.74 8.06 -2.91 -0.02 2.71 16 18 C 0.01 0.56 5.47 84.65 0.46 1.02 16 19 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 20 Si 0.93 45.89 27.47 68.60 1.88 47.77 16 21 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.24 -11.36 6.54 99.48 0.65 -10.71 16 24 C 0.07 2.24 4.63 86.30 0.40 2.64 16 25 C -0.01 -0.29 5.78 28.79 0.17 -0.12 16 26 C 0.24 6.53 15.43 89.44 1.38 7.91 16 27 N -0.50 -16.37 18.54 20.00 0.37 -16.00 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.31 6.16 -2.38 -0.01 1.30 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.16 1.84 6.06 -2.92 -0.02 1.82 16 37 H 0.00 0.10 5.38 -2.39 -0.01 0.09 16 38 H 0.03 1.63 4.94 -2.39 -0.01 1.62 16 39 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.06 2.30 7.40 -2.39 -0.02 2.28 16 41 H 0.02 0.72 7.04 -2.38 -0.02 0.71 16 42 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.14 1.92 6.63 -2.38 -0.02 1.91 16 Total: -1.00 -77.97 350.54 4.04 -73.93 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.98 Total: 10.08 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 5.55 Total: -14.71 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -4.37 Total: -117.07 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -77.97 4.04 -73.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462024941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.124 kcal (2) G-P(sol) polarization free energy of solvation -77.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds