Wall clock time and date at job start Tue Mar 31 2020 09:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46489 * 2 1 4 4 C 1.50700 * 109.47122 * 240.00357 * 2 1 3 5 5 N 1.31262 * 120.05674 * 284.99931 * 4 2 1 6 6 C 1.32577 * 122.77923 * 179.97438 * 5 4 2 7 7 C 1.36214 * 121.87238 * 359.97438 * 6 5 4 8 8 C 1.40650 * 118.66370 * 0.02562 * 7 6 5 9 9 C 1.40237 * 122.22716 * 180.02562 * 8 7 6 10 10 C 1.36219 * 119.47884 * 179.97438 * 9 8 7 11 11 C 1.39380 * 121.02484 * 0.02562 * 10 9 8 12 12 C 1.36163 * 121.09056 * 0.02562 * 11 10 9 13 13 C 1.40383 * 119.51475 * 359.97338 * 12 11 10 14 14 N 1.46895 * 109.47161 * 119.99892 * 2 1 3 15 15 C 1.46906 * 111.00263 * 300.00461 * 14 2 1 16 16 C 1.50697 * 109.47127 * 171.64571 * 15 14 2 17 17 H 1.08001 * 120.00344 * 354.93944 * 16 15 14 18 18 C 1.37878 * 119.99997 * 174.94197 * 16 15 14 19 19 N 1.31515 * 119.99933 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47070 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46600 * 120.00050 * 20 18 16 23 23 H 1.48498 * 109.47534 * 240.00053 * 20 18 16 24 24 C 1.46893 * 111.00178 * 176.04610 * 14 2 1 25 25 C 1.53002 * 109.47041 * 61.43619 * 24 14 2 26 26 C 1.47200 * 109.47493 * 182.56044 * 25 24 14 27 27 N 5.28598 * 167.58583 * 67.81111 * 2 1 3 28 28 H 1.09004 * 109.47611 * 300.00102 * 1 2 3 29 29 H 1.08998 * 109.47241 * 60.00097 * 1 2 3 30 30 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.06523 * 180.02562 * 6 5 4 32 32 H 1.07995 * 120.66612 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.26421 * 359.97373 * 9 8 7 34 34 H 1.08004 * 119.48724 * 179.97438 * 10 9 8 35 35 H 1.07994 * 119.45141 * 179.97438 * 11 10 9 36 36 H 1.07997 * 120.24220 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.46666 * 291.64609 * 15 14 2 38 38 H 1.08996 * 109.47236 * 51.64067 * 15 14 2 39 39 H 0.97002 * 119.99888 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47641 * 181.43535 * 24 14 2 41 41 H 1.09005 * 109.47467 * 301.43451 * 24 14 2 42 42 H 1.09005 * 109.46875 * 302.55632 * 25 24 14 43 43 H 1.08996 * 109.47179 * 62.55862 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 1.9743 -2.0196 -1.3036 6 6 2.3999 -2.6992 -2.3594 7 6 2.9303 -2.0773 -3.4490 8 6 3.0258 -0.6740 -3.4450 9 6 3.5585 0.0424 -4.5264 10 6 3.6239 1.4015 -4.4631 11 6 3.1700 2.0910 -3.3400 12 6 2.6479 1.4281 -2.2714 13 6 2.5642 0.0270 -2.3002 14 7 2.0197 -0.6924 1.1994 15 6 1.5486 -0.0264 2.4211 16 6 1.8939 -0.8723 3.6195 17 1 2.3377 -1.8474 3.4825 18 6 1.6434 -0.4015 4.8909 19 7 1.1025 0.7856 5.0579 20 14 2.0708 -1.4504 6.3764 21 1 2.6634 -2.7340 5.9220 22 1 3.0498 -0.7275 7.2275 23 1 0.8397 -1.7231 7.1607 24 6 3.4850 -0.7945 1.1870 25 6 4.0940 0.6091 1.1840 26 6 5.5606 0.5076 1.1096 27 7 6.6924 0.4292 1.0522 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.3231 -3.7764 -2.3558 32 1 3.2706 -2.6502 -4.2989 33 1 3.9142 -0.4793 -5.4026 34 1 4.0346 1.9534 -5.2957 35 1 3.2344 3.1688 -3.3167 36 1 2.3007 1.9761 -1.4080 37 1 2.0299 0.9472 2.5127 38 1 0.4679 0.1061 2.3691 39 1 0.9266 1.1170 5.9524 40 1 3.8193 -1.3336 2.0735 41 1 3.8044 -1.3311 0.2936 42 1 3.7240 1.1638 0.3216 43 1 3.8117 1.1296 2.0991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462024946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:09 Heat of formation + Delta-G solvation = 74.302801 kcal Electronic energy + Delta-G solvation = -25430.867474 eV Core-core repulsion = 22054.541525 eV Total energy + Delta-G solvation = -3376.325949 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96918 -39.53881 -38.11633 -37.46850 -35.02554 -34.14447 -32.70297 -32.04876 -30.87517 -29.91126 -28.42222 -25.70119 -25.03331 -24.47145 -24.13034 -22.52353 -20.56300 -19.03363 -18.49010 -18.33602 -18.18413 -17.13275 -16.84733 -16.45123 -15.97096 -15.77809 -15.40026 -15.33719 -14.97431 -14.82300 -14.64032 -14.50847 -14.18022 -13.76246 -13.65313 -13.51492 -13.19911 -13.05479 -12.96520 -12.85786 -12.68567 -12.63069 -12.49496 -12.44198 -12.22480 -11.92285 -11.58171 -11.51178 -11.19906 -10.90732 -10.47422 -10.13560 -9.95154 -8.88921 -8.83789 -8.10296 -6.15101 -0.50772 0.04942 1.02965 1.43166 1.47152 1.57306 1.68130 1.72263 2.22609 2.46958 2.91422 3.16226 3.23867 3.31954 3.36984 3.66955 3.87612 3.94219 4.09154 4.10221 4.16042 4.27172 4.29405 4.37600 4.46821 4.52315 4.56196 4.68315 4.73176 4.87392 4.93698 4.99843 5.05661 5.13342 5.18080 5.23563 5.39333 5.43078 5.46915 5.54750 5.55438 5.78145 5.79501 6.00427 6.19474 6.37886 6.52540 6.71277 7.00616 7.27850 7.52952 8.99367 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.004278 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.363496 B = 6544.107990 C = 6949.167709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.122 3.878 3 H 0.070 0.930 4 C 0.176 3.824 5 N -0.489 5.489 6 C 0.059 3.941 7 C -0.159 4.159 8 C -0.045 4.045 9 C -0.118 4.118 10 C -0.101 4.101 11 C -0.118 4.118 12 C -0.108 4.108 13 C -0.119 4.119 14 N -0.515 5.515 15 C 0.197 3.803 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.015 3.985 19 N -0.925 5.925 20 Si 0.946 3.054 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.085 3.915 25 C -0.062 4.062 26 C 0.242 3.758 27 N -0.488 5.488 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.141 0.859 37 H -0.004 1.004 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.121 0.879 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 2.164 -21.127 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.013 3.987 3 H 0.087 0.913 4 C 0.023 3.977 5 N -0.197 5.197 6 C -0.084 4.084 7 C -0.179 4.179 8 C -0.050 4.050 9 C -0.136 4.136 10 C -0.120 4.120 11 C -0.136 4.136 12 C -0.128 4.128 13 C -0.122 4.122 14 N -0.237 5.237 15 C 0.072 3.928 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.184 4.184 19 N -0.566 5.566 20 Si 0.773 3.227 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.046 4.046 25 C -0.103 4.103 26 C -0.075 4.075 27 N -0.166 5.166 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.183 0.817 32 H 0.181 0.819 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.014 0.986 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.829 1.056 -20.452 20.673 hybrid contribution 0.245 0.606 0.683 0.946 sum 3.073 1.662 -19.768 20.075 Atomic orbital electron populations 1.21764 0.92872 1.02335 1.02073 1.20654 0.96529 0.94712 0.86763 0.91308 1.21480 0.92872 0.89596 0.93715 1.67262 1.16117 1.09451 1.26836 1.22605 0.95667 1.01200 0.88926 1.22190 1.01143 0.93698 1.00826 1.18491 0.97809 0.94324 0.94384 1.21273 0.99502 0.94991 0.97810 1.21381 0.97490 0.94410 0.98706 1.21298 0.97455 1.01751 0.93056 1.21315 0.99128 0.92187 1.00140 1.19004 1.02097 0.95663 0.95402 1.62201 1.07572 1.52277 1.01698 1.19630 0.95384 0.92244 0.85566 1.21449 1.39773 1.02819 0.91095 0.92725 1.25558 0.95540 0.96021 1.01268 1.70024 1.44953 1.18798 1.22830 0.85678 0.77749 0.79253 0.80008 1.19574 1.20950 1.20806 1.21838 0.87995 0.92958 1.01791 1.20193 0.80794 1.03053 1.06292 1.29334 0.95189 0.91642 0.91314 1.81136 1.13918 1.10487 1.11081 0.92026 0.90884 0.92935 0.81748 0.81860 0.82847 0.82753 0.83138 0.84156 0.98613 0.95923 0.92946 0.91244 0.91910 0.86161 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.96 71.98 0.65 -3.49 16 2 C 0.12 3.85 1.73 44.17 0.08 3.93 16 3 H 0.07 1.92 4.20 -2.39 -0.01 1.91 16 4 C 0.18 5.24 4.24 43.17 0.18 5.42 16 5 N -0.49 -15.64 9.59 -183.63 -1.76 -17.40 16 6 C 0.06 1.51 11.07 84.11 0.93 2.45 16 7 C -0.16 -3.34 9.88 22.39 0.22 -3.11 16 8 C -0.04 -1.01 5.75 -21.29 -0.12 -1.13 16 9 C -0.12 -1.95 9.81 22.29 0.22 -1.73 16 10 C -0.10 -1.45 9.95 22.07 0.22 -1.23 16 11 C -0.12 -1.90 9.94 22.06 0.22 -1.68 16 12 C -0.11 -2.25 9.00 22.31 0.20 -2.05 16 13 C -0.12 -3.03 5.74 -21.31 -0.12 -3.15 16 14 N -0.51 -19.90 4.42 -879.94 -3.89 -23.79 16 15 C 0.20 9.07 4.29 85.55 0.37 9.44 16 16 C -0.51 -26.89 8.36 25.60 0.21 -26.68 16 17 H 0.05 2.93 7.20 -2.91 -0.02 2.91 16 18 C 0.01 0.79 5.46 84.65 0.46 1.25 16 19 N -0.93 -51.69 13.29 21.45 0.28 -51.41 16 20 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 24 C 0.08 3.06 4.78 86.31 0.41 3.47 16 25 C -0.06 -1.91 5.02 28.79 0.14 -1.77 16 26 C 0.24 8.09 15.43 89.44 1.38 9.47 16 27 N -0.49 -18.06 18.54 20.01 0.37 -17.69 16 28 H 0.06 2.07 6.23 -2.38 -0.01 2.05 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.14 2.63 6.10 -2.91 -0.02 2.61 16 37 H 0.00 -0.18 6.21 -2.39 -0.01 -0.19 16 38 H 0.02 1.13 5.90 -2.39 -0.01 1.11 16 39 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.07 2.84 6.78 -2.39 -0.02 2.82 16 41 H 0.06 2.23 6.61 -2.38 -0.02 2.21 16 42 H 0.12 3.11 5.97 -2.38 -0.01 3.10 16 43 H 0.11 3.88 6.50 -2.39 -0.02 3.86 16 Total: -1.00 -65.68 352.65 3.72 -61.96 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.04 Total: 13.57 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.65 Total: -10.59 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.99 Total: -110.28 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.68 3.72 -61.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462024946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.258 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds