Wall clock time and date at job start Tue Mar 31 2020 10:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 C 1.53006 * 109.47043 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47045 * 179.97438 * 4 3 2 6 6 C 1.42898 * 113.99652 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47695 * 29.99658 * 6 5 4 8 8 C 1.53005 * 109.46987 * 269.99916 * 6 5 4 9 9 C 1.50694 * 109.47391 * 150.00165 * 6 5 4 10 10 O 1.21286 * 119.99711 * 15.54553 * 9 6 5 11 11 N 1.34775 * 120.00406 * 195.54944 * 9 6 5 12 12 C 1.46498 * 120.00043 * 185.48002 * 11 9 6 13 13 C 1.50707 * 109.47053 * 89.99952 * 12 11 9 14 14 H 1.07991 * 119.99991 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99598 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99561 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00167 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47273 * 90.00091 * 17 15 13 19 19 H 1.48503 * 109.46787 * 209.99760 * 17 15 13 20 20 H 1.48501 * 109.47344 * 329.99749 * 17 15 13 21 21 C 1.46496 * 120.00046 * 5.47896 * 11 9 6 22 22 C 1.50697 * 109.47232 * 86.26347 * 21 11 9 23 23 C 1.34518 * 125.78983 * 90.00410 * 22 21 11 24 24 C 1.41374 * 106.84171 * 180.02562 * 23 22 21 25 25 C 1.34510 * 106.84265 * 359.97438 * 24 23 22 26 26 O 1.34306 * 108.42334 * 359.74266 * 25 24 23 27 27 H 1.09000 * 109.46861 * 59.99842 * 1 2 3 28 28 H 1.08995 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46801 * 300.00303 * 1 2 3 30 30 H 1.08992 * 109.47036 * 240.00225 * 2 1 3 31 31 H 1.08998 * 109.46965 * 119.99389 * 2 1 3 32 32 H 1.09006 * 109.47417 * 59.99782 * 3 2 1 33 33 H 1.09000 * 109.47506 * 299.99762 * 3 2 1 34 34 H 1.09000 * 109.47063 * 300.00385 * 4 3 2 35 35 H 1.09001 * 109.46429 * 59.99821 * 4 3 2 36 36 H 1.08998 * 109.47282 * 175.15684 * 8 6 5 37 37 H 1.08999 * 109.46806 * 295.16052 * 8 6 5 38 38 H 1.09000 * 109.47201 * 55.15479 * 8 6 5 39 39 H 1.09003 * 109.47055 * 209.99897 * 12 11 9 40 40 H 1.08998 * 109.47363 * 329.99965 * 12 11 9 41 41 H 0.96996 * 119.99867 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.47429 * 206.26951 * 21 11 9 43 43 H 1.09004 * 109.46560 * 326.26589 * 21 11 9 44 44 H 1.07999 * 126.57393 * 0.02932 * 23 22 21 45 45 H 1.08006 * 126.57729 * 179.97438 * 24 23 22 46 46 H 1.08004 * 125.79195 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.4709 2.9027 0.0000 7 1 5.9034 2.0440 -0.5134 8 6 5.9792 2.9436 1.4425 9 6 5.8745 4.1686 -0.7109 10 8 5.0517 5.0343 -0.9220 11 7 7.1498 4.3389 -1.1122 12 6 7.5702 5.6157 -1.6947 13 6 8.0578 6.5305 -0.6008 14 1 8.0543 6.1947 0.4256 15 6 8.5081 7.7964 -0.9105 16 7 8.9340 8.5946 0.0440 17 14 8.5133 8.3776 -2.6857 18 1 7.2171 9.0324 -2.9960 19 1 9.6189 9.3488 -2.8853 20 1 8.7082 7.2136 -3.5871 21 6 8.1157 3.2472 -0.9660 22 6 8.0384 2.3434 -2.1694 23 6 8.7561 2.4750 -3.2994 24 6 8.3681 1.4196 -4.1563 25 6 7.4369 0.7058 -3.4986 26 8 7.2455 1.2664 -2.2932 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.9288 0.8908 35 1 3.9337 0.9286 -0.8891 36 1 7.0692 2.9429 1.4438 37 1 5.6159 3.8482 1.9302 38 1 5.6147 2.0690 1.9812 39 1 8.3753 5.4418 -2.4086 40 1 6.7254 6.0778 -2.2052 41 1 9.2512 9.4849 -0.1739 42 1 9.1213 3.6600 -0.8855 43 1 7.8846 2.6757 -0.0669 44 1 9.4883 3.2401 -3.5113 45 1 8.7468 1.2240 -5.1488 46 1 6.9323 -0.1722 -3.8740 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299520113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:59 Heat of formation + Delta-G solvation = -72.526210 kcal Electronic energy + Delta-G solvation = -26456.012586 eV Core-core repulsion = 22733.717982 eV Total energy + Delta-G solvation = -3722.294604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47403 -39.58529 -37.67801 -35.36727 -35.06437 -32.91101 -32.76151 -31.38862 -30.37152 -28.97164 -27.93911 -25.71182 -24.31791 -23.30190 -21.85359 -21.60976 -21.25591 -20.60856 -18.75313 -17.52105 -16.91665 -16.88040 -16.47519 -16.06302 -15.71922 -15.18952 -14.88999 -14.66905 -14.38206 -14.10511 -13.85892 -13.39222 -12.97145 -12.86233 -12.82020 -12.72901 -12.49711 -12.36077 -12.26590 -12.13530 -11.85984 -11.68866 -11.41663 -11.30998 -11.21838 -10.98588 -10.82851 -10.77005 -10.56029 -10.20494 -9.84506 -9.65307 -9.57268 -8.87609 -8.61271 -8.44385 -7.89422 -6.11325 -4.10816 1.75832 2.68040 2.98175 3.27049 3.30124 3.33116 3.35897 3.38593 4.11592 4.38061 4.74217 4.76057 4.82309 4.90935 4.93276 5.04307 5.09722 5.12004 5.16361 5.22472 5.28989 5.35279 5.39341 5.46915 5.59558 5.65444 5.66753 5.72960 5.80647 5.84866 5.87502 5.93495 6.03450 6.09463 6.15928 6.17846 6.32628 6.57127 6.61930 6.91120 7.13474 7.21527 7.33916 7.56844 8.08950 8.43093 8.86696 8.92925 9.48678 11.01709 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.004306 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.412053 B = 6501.094273 C = 7953.552614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.119 4.119 4 C 0.059 3.941 5 O -0.357 6.357 6 C 0.069 3.931 7 H 0.082 0.918 8 C -0.170 4.170 9 C 0.516 3.484 10 O -0.513 6.513 11 N -0.588 5.588 12 C 0.217 3.783 13 C -0.532 4.532 14 H 0.077 0.923 15 C 0.075 3.925 16 N -0.895 5.895 17 Si 0.874 3.126 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.184 3.816 22 C -0.029 4.029 23 C -0.194 4.194 24 C -0.213 4.213 25 C -0.048 4.048 26 O -0.179 6.179 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.150 0.850 45 H 0.145 0.855 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.712 -21.093 -2.800 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.275 6.275 6 C 0.008 3.992 7 H 0.100 0.900 8 C -0.227 4.227 9 C 0.302 3.698 10 O -0.387 6.387 11 N -0.322 5.322 12 C 0.097 3.903 13 C -0.571 4.571 14 H 0.095 0.905 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.700 3.300 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.190 1.190 21 C 0.060 3.940 22 C -0.080 4.080 23 C -0.214 4.214 24 C -0.232 4.232 25 C -0.115 4.115 26 O -0.075 6.075 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.167 0.833 45 H 0.163 0.837 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.426 -20.330 -2.646 21.485 hybrid contribution 0.484 0.174 -1.205 1.310 sum -5.942 -20.156 -3.851 21.364 Atomic orbital electron populations 1.21754 0.95498 1.01519 1.02126 1.21437 0.96165 0.96180 1.02064 1.21541 0.93496 0.96970 1.03671 1.22594 0.95153 0.84121 0.99879 1.88038 1.18968 1.25540 1.94971 1.22016 0.83035 0.97340 0.96857 0.90038 1.22243 1.01833 1.03615 0.95037 1.20139 0.82412 0.87939 0.79291 1.90680 1.49861 1.43792 1.54352 1.47908 1.08135 1.14175 1.61933 1.19728 0.95676 0.80202 0.94697 1.21318 1.42592 0.98303 0.94849 0.90483 1.24826 0.94545 0.96223 0.97186 1.69888 1.42841 1.08388 1.32206 0.86887 0.78269 0.79256 0.85542 1.19845 1.21024 1.18997 1.20068 0.96665 0.85905 0.91373 1.23336 0.94667 0.89713 1.00321 1.21693 1.04371 1.01477 0.93850 1.21825 1.01580 0.98044 1.01755 1.23957 1.02112 1.01118 0.84363 1.83989 1.53641 1.35710 1.34143 0.92580 0.92752 0.92582 0.91934 0.91910 0.90997 0.90996 0.93457 0.93491 0.90651 0.90711 0.91650 0.94989 0.94301 0.92493 0.86040 0.89318 0.83253 0.83671 0.78464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.32 5.58 -26.73 -0.15 -1.46 16 4 C 0.06 0.75 5.75 37.16 0.21 0.96 16 5 O -0.36 -6.22 9.57 -54.65 -0.52 -6.74 16 6 C 0.07 1.16 2.29 -27.88 -0.06 1.10 16 7 H 0.08 1.21 5.40 -51.93 -0.28 0.93 16 8 C -0.17 -2.45 9.27 37.16 0.34 -2.11 16 9 C 0.52 11.23 6.93 -10.99 -0.08 11.15 16 10 O -0.51 -13.59 16.12 -13.86 -0.22 -13.81 16 11 N -0.59 -12.19 2.45 -176.44 -0.43 -12.62 16 12 C 0.22 5.27 4.25 -5.19 -0.02 5.25 16 13 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 14 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 15 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 16 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 17 Si 0.87 21.44 27.47 -169.99 -4.67 16.78 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 21 C 0.18 2.91 5.55 -5.20 -0.03 2.88 16 22 C -0.03 -0.44 6.68 -35.62 -0.24 -0.67 16 23 C -0.19 -2.80 10.81 -39.70 -0.43 -3.23 16 24 C -0.21 -2.61 10.91 -39.71 -0.43 -3.05 16 25 C -0.05 -0.55 12.09 29.41 0.36 -0.19 16 26 O -0.18 -2.49 9.32 5.69 0.05 -2.43 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.51 7.79 -51.93 -0.40 0.11 16 35 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.07 0.99 6.15 -51.93 -0.32 0.67 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.76 7.79 -51.93 -0.40 0.35 16 39 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 40 H 0.04 1.03 6.78 -51.93 -0.35 0.68 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.12 1.83 8.04 -51.93 -0.42 1.41 16 43 H 0.09 1.18 4.70 -51.93 -0.24 0.94 16 44 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 45 H 0.15 1.43 8.06 -52.48 -0.42 1.00 16 46 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -35.10 378.56 -7.53 -42.62 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.45 Total: 1.48 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.76 Total: -4.55 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.34 Total: -39.05 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.69 Total: -22.98 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.10 -7.53 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299520113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.905 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds