Wall clock time and date at job start Tue Mar 31 2020 09:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38418 * 120.00080 * 2 1 4 4 F 1.35096 * 120.03639 * 0.02562 * 3 2 1 5 5 C 1.38651 * 119.92756 * 180.29597 * 3 2 1 6 6 F 1.35099 * 120.03183 * 179.70456 * 5 3 2 7 7 C 1.38407 * 119.93160 * 359.72518 * 5 3 2 8 8 C 1.38218 * 120.00116 * 0.02562 * 7 5 3 9 9 C 1.38219 * 120.00327 * 179.74829 * 2 1 3 10 10 C 1.50704 * 119.95995 * 359.97438 * 9 2 1 11 11 N 1.46895 * 109.47037 * 295.70282 * 10 9 2 12 12 C 1.46909 * 110.99832 * 158.27735 * 11 10 9 13 13 C 1.50699 * 109.46945 * 202.67844 * 12 11 10 14 14 H 1.07997 * 120.00239 * 5.55677 * 13 12 11 15 15 C 1.37879 * 119.99912 * 185.56081 * 13 12 11 16 16 N 1.31517 * 119.99704 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00013 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46839 * 90.00190 * 17 15 13 19 19 H 1.48502 * 109.47049 * 209.99893 * 17 15 13 20 20 H 1.48492 * 109.47344 * 330.00407 * 17 15 13 21 21 C 1.46901 * 110.99988 * 282.22747 * 11 10 9 22 22 C 1.55243 * 110.57858 * 180.66939 * 21 11 10 23 23 C 1.54894 * 102.58572 * 203.34002 * 22 21 11 24 24 C 1.54272 * 104.30892 * 37.93297 * 23 22 21 25 25 C 1.53871 * 106.60172 * 336.32231 * 24 23 22 26 26 H 1.09000 * 109.47316 * 274.88074 * 1 2 3 27 27 H 1.09003 * 109.47493 * 34.88086 * 1 2 3 28 28 H 1.09004 * 109.47310 * 154.88167 * 1 2 3 29 29 H 1.07995 * 120.00368 * 179.97438 * 7 5 3 30 30 H 1.08001 * 119.96729 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.46724 * 175.69728 * 10 9 2 32 32 H 1.08997 * 109.46928 * 55.70481 * 10 9 2 33 33 H 1.08995 * 109.46825 * 322.67710 * 12 11 10 34 34 H 1.08996 * 109.46797 * 82.67666 * 12 11 10 35 35 H 0.97005 * 119.99847 * 180.02562 * 16 15 13 36 36 H 1.08998 * 110.43547 * 303.25798 * 21 11 10 37 37 H 1.08996 * 110.89860 * 85.05035 * 22 21 11 38 38 H 1.08996 * 110.76830 * 321.57254 * 22 21 11 39 39 H 1.09000 * 110.48552 * 279.19529 * 23 22 21 40 40 H 1.08994 * 110.48453 * 156.67493 * 23 22 21 41 41 H 1.09004 * 110.03090 * 95.61333 * 24 23 22 42 42 H 1.09005 * 110.02734 * 216.98720 * 24 23 22 43 43 H 1.09002 * 110.02903 * 119.28454 * 25 24 23 44 44 H 1.09002 * 110.03277 * 240.66866 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1990 1.1987 0.0000 4 9 1.5243 2.3691 0.0005 5 6 3.5855 1.1970 -0.0062 6 9 4.2631 2.3657 -0.0123 7 6 4.2746 -0.0034 -0.0066 8 6 3.5806 -1.1987 -0.0014 9 6 2.1981 -1.1970 0.0053 10 6 1.4437 -2.5016 0.0116 11 7 0.6791 -2.6190 1.2603 12 6 -0.4329 -3.5671 1.1095 13 6 -1.4899 -3.2698 2.1418 14 1 -1.3926 -2.4045 2.7806 15 6 -2.5811 -4.1027 2.2707 16 7 -2.6993 -5.1567 1.4931 17 14 -3.8909 -3.7346 3.5507 18 1 -4.9369 -2.8663 2.9530 19 1 -4.5058 -5.0061 4.0094 20 1 -3.2714 -3.0388 4.7070 21 6 1.5516 -3.0045 2.3776 22 6 0.7312 -3.1421 3.6883 23 6 1.8074 -2.9369 4.7832 24 6 2.7293 -1.8403 4.2109 25 6 2.5667 -1.8833 2.6815 26 1 -0.3634 0.0874 1.0239 27 1 -0.3634 0.8430 -0.5877 28 1 -0.3634 -0.9305 -0.4362 29 1 5.3545 -0.0061 -0.0119 30 1 4.1188 -2.1350 -0.0022 31 1 2.1490 -3.3294 -0.0620 32 1 0.7603 -2.5302 -0.8370 33 1 -0.8613 -3.4688 0.1121 34 1 -0.0650 -4.5836 1.2485 35 1 -3.4672 -5.7425 1.5835 36 1 2.0692 -3.9369 2.1521 37 1 0.2855 -4.1338 3.7657 38 1 -0.0337 -2.3680 3.7485 39 1 2.3663 -3.8584 4.9462 40 1 1.3469 -2.6016 5.7125 41 1 2.4288 -0.8640 4.5912 42 1 3.7650 -2.0439 4.4830 43 1 2.1871 -0.9278 2.3194 44 1 3.5237 -2.1074 2.2103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237160784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:36 Heat of formation + Delta-G solvation = -69.155363 kcal Electronic energy + Delta-G solvation = -26952.032034 eV Core-core repulsion = 23118.796086 eV Total energy + Delta-G solvation = -3833.235948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.160 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.32140 -48.39874 -39.76322 -37.80357 -34.92965 -32.90966 -32.31190 -30.83965 -28.32004 -27.34602 -27.20716 -26.51487 -24.21252 -22.16926 -21.67114 -20.87923 -19.82979 -19.17444 -17.61290 -17.12662 -16.77900 -16.26017 -16.20644 -15.25846 -15.10590 -14.85095 -14.58595 -14.35850 -14.21359 -13.84993 -13.49370 -13.27275 -13.05425 -12.85366 -12.67625 -12.37970 -12.11749 -11.97529 -11.65312 -11.39956 -11.32949 -11.06800 -11.01946 -10.75157 -10.63609 -10.58739 -10.24168 -10.19242 -10.17215 -9.96461 -9.55003 -9.05551 -8.61177 -8.43220 -8.37197 -7.38065 -6.04371 -4.03123 1.04112 1.14146 3.30065 3.37355 3.39737 3.45788 3.90722 4.39575 4.46047 4.63921 4.74619 4.88647 5.13645 5.14255 5.16139 5.24132 5.32038 5.46405 5.64210 5.74033 5.84832 5.90980 5.92735 5.96585 6.02146 6.09349 6.14675 6.15007 6.20213 6.26833 6.32731 6.37235 6.45927 6.56327 6.58879 6.66518 6.74773 6.94250 7.02675 7.10774 7.24803 7.34893 7.83661 8.06513 8.13860 8.47416 9.02828 9.59039 11.05922 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.004722 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.530767 B = 5928.022531 C = 6530.449550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.060 4.060 3 C 0.057 3.943 4 F -0.132 7.132 5 C 0.057 3.943 6 F -0.137 7.137 7 C -0.138 4.138 8 C -0.096 4.096 9 C -0.043 4.043 10 C 0.088 3.912 11 N -0.522 5.522 12 C 0.193 3.807 13 C -0.495 4.495 14 H 0.070 0.930 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.891 3.109 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.273 1.273 21 C 0.093 3.907 22 C -0.097 4.097 23 C -0.133 4.133 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.024 0.976 34 H -0.001 1.001 35 H 0.260 0.740 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.565 7.100 -1.668 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.061 4.061 3 C 0.037 3.963 4 F -0.110 7.110 5 C 0.037 3.963 6 F -0.116 7.116 7 C -0.157 4.157 8 C -0.114 4.114 9 C -0.044 4.044 10 C -0.040 4.040 11 N -0.246 5.246 12 C 0.068 3.932 13 C -0.534 4.534 14 H 0.088 0.912 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.198 1.198 21 C -0.016 4.016 22 C -0.135 4.135 23 C -0.171 4.171 24 C -0.158 4.158 25 C -0.157 4.157 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.016 0.984 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.222 7.479 -1.601 14.418 hybrid contribution -0.267 -0.258 0.499 0.622 sum 11.955 7.221 -1.101 14.010 Atomic orbital electron populations 1.20713 0.88422 1.03032 1.03911 1.19772 0.98097 0.89861 0.98362 1.17549 0.88090 0.82309 1.08383 1.91480 1.80004 1.45405 1.94149 1.17614 0.88282 0.82372 1.08071 1.91485 1.79781 1.46000 1.94307 1.20879 1.00638 0.90337 1.03850 1.20955 0.93558 0.97552 0.99380 1.19853 0.92847 0.95160 0.96505 1.21056 0.96269 0.91311 0.95411 1.62266 1.09443 1.52038 1.00890 1.19787 0.87108 0.88773 0.97500 1.21252 1.04148 1.09947 1.18037 0.91196 1.24950 0.98168 0.95185 0.96310 1.69950 1.30053 1.14885 1.39134 0.86609 0.82045 0.77517 0.81945 1.20780 1.21511 1.19789 1.22408 0.92445 0.94315 0.92401 1.22731 0.96245 1.03662 0.90859 1.22466 0.97769 0.97813 0.99027 1.22080 0.98683 0.98980 0.96047 1.22471 0.97893 1.00248 0.95094 0.89342 0.92606 0.89549 0.84368 0.84808 0.94341 0.89691 0.95840 0.98350 0.93047 0.95190 0.91006 0.89308 0.92736 0.92449 0.92524 0.93043 0.90926 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 8.86 36.00 0.32 -1.28 16 2 C -0.06 -0.88 5.26 -104.57 -0.55 -1.43 16 3 C 0.06 0.84 7.25 -39.36 -0.29 0.56 16 4 F -0.13 -2.07 16.48 2.25 0.04 -2.04 16 5 C 0.06 0.78 7.31 -39.37 -0.29 0.49 16 6 F -0.14 -1.95 17.18 2.25 0.04 -1.91 16 7 C -0.14 -1.59 10.02 -39.53 -0.40 -1.99 16 8 C -0.10 -1.12 7.36 -39.58 -0.29 -1.41 16 9 C -0.04 -0.59 3.16 -104.62 -0.33 -0.92 16 10 C 0.09 1.36 4.30 -4.98 -0.02 1.34 16 11 N -0.52 -9.62 3.41 -227.31 -0.77 -10.40 16 12 C 0.19 4.43 4.63 -4.97 -0.02 4.41 16 13 C -0.50 -12.41 6.93 -34.44 -0.24 -12.64 16 14 H 0.07 1.75 5.77 -52.49 -0.30 1.45 16 15 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 16 N -0.90 -25.24 13.29 55.43 0.74 -24.50 16 17 Si 0.89 20.66 29.54 -169.99 -5.02 15.63 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 C 0.09 1.62 2.41 -65.86 -0.16 1.46 16 22 C -0.10 -1.81 4.53 -24.54 -0.11 -1.92 16 23 C -0.13 -2.01 6.82 -25.07 -0.17 -2.18 16 24 C -0.12 -1.69 6.80 -25.61 -0.17 -1.86 16 25 C -0.12 -1.78 4.53 -25.62 -0.12 -1.90 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.06 0.78 7.79 -51.93 -0.40 0.38 16 28 H 0.09 1.39 6.24 -51.93 -0.32 1.07 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.31 7.93 -52.49 -0.42 0.89 16 31 H 0.04 0.56 7.63 -51.93 -0.40 0.17 16 32 H 0.08 1.33 6.65 -51.93 -0.35 0.99 16 33 H 0.02 0.58 7.51 -51.93 -0.39 0.19 16 34 H 0.00 -0.04 7.95 -51.93 -0.41 -0.45 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 37 H 0.07 1.49 7.64 -51.93 -0.40 1.10 16 38 H 0.09 1.82 5.87 -51.93 -0.30 1.52 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.17 6.04 -51.93 -0.31 0.86 16 44 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -26.59 345.49 -9.14 -35.74 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.43 Total: 0.20 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -2.93 Total: -17.93 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.04 Total: -34.90 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.95 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.59 -9.14 -35.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237160784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.418 kcal (2) G-P(sol) polarization free energy of solvation -26.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds