Wall clock time and date at job start Tue Mar 31 2020 09:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 C 1.53001 * 109.47494 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47339 * 173.81060 * 4 3 2 6 6 C 1.46909 * 111.00123 * 72.38764 * 5 4 3 7 7 C 1.50695 * 109.46792 * 283.49133 * 6 5 4 8 8 H 1.08001 * 120.00744 * 354.47535 * 7 6 5 9 9 C 1.37882 * 119.99693 * 174.48022 * 7 6 5 10 10 N 1.31515 * 119.99889 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00198 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47005 * 89.99818 * 11 9 7 13 13 H 1.48496 * 109.47425 * 210.00075 * 11 9 7 14 14 H 1.48504 * 109.47050 * 330.00340 * 11 9 7 15 15 C 1.46899 * 111.00135 * 196.33785 * 5 4 3 16 16 C 1.50701 * 109.46781 * 71.51751 * 15 5 4 17 17 C 1.38242 * 119.98497 * 261.32563 * 16 15 5 18 18 C 1.50703 * 119.99513 * 359.97438 * 17 16 15 19 19 C 1.38216 * 120.01607 * 179.72949 * 17 16 15 20 20 C 1.38356 * 119.98215 * 0.54143 * 19 17 16 21 21 Cl 1.73594 * 120.01368 * 179.75341 * 20 19 17 22 22 C 1.38352 * 119.97195 * 359.72930 * 20 19 17 23 23 C 1.38212 * 119.99183 * 359.97438 * 22 20 19 24 24 C 1.50694 * 119.99861 * 180.02562 * 23 22 20 25 25 H 1.08993 * 109.47503 * 60.00166 * 1 2 3 26 26 H 1.09001 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47532 * 300.00096 * 1 2 3 28 28 H 1.08998 * 109.47286 * 239.99764 * 2 1 3 29 29 H 1.09004 * 109.47251 * 119.99476 * 2 1 3 30 30 H 1.09003 * 109.47679 * 59.99667 * 3 2 1 31 31 H 1.09008 * 109.47094 * 299.99954 * 3 2 1 32 32 H 1.08998 * 109.47338 * 53.80934 * 4 3 2 33 33 H 1.09005 * 109.46813 * 293.81099 * 4 3 2 34 34 H 1.08999 * 109.46471 * 43.48813 * 6 5 4 35 35 H 1.09003 * 109.47036 * 163.48599 * 6 5 4 36 36 H 0.97004 * 119.99949 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47109 * 191.51224 * 15 5 4 38 38 H 1.08998 * 109.47107 * 311.51941 * 15 5 4 39 39 H 1.09002 * 109.46923 * 90.61587 * 18 17 16 40 40 H 1.08992 * 109.47531 * 210.61635 * 18 17 16 41 41 H 1.09000 * 109.46944 * 330.62107 * 18 17 16 42 42 H 1.07995 * 120.01262 * 180.26875 * 19 17 16 43 43 H 1.08007 * 120.00348 * 180.02562 * 22 20 19 44 44 H 1.09013 * 109.47036 * 269.98143 * 24 23 22 45 45 H 1.08997 * 109.47281 * 29.97249 * 24 23 22 46 46 H 1.09001 * 109.47317 * 149.98169 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0595 2.8195 -0.1500 6 6 3.8442 3.5912 1.0814 7 6 2.3920 3.9805 1.1828 8 1 1.7163 3.7625 0.3689 9 6 1.9258 4.6151 2.3146 10 7 0.6584 4.9553 2.4029 11 14 3.0942 4.9917 3.7226 12 1 3.6971 6.3336 3.5201 13 1 2.3459 4.9737 5.0052 14 1 4.1685 3.9672 3.7618 15 6 5.4756 2.8353 -0.5403 16 6 5.6077 2.3767 -1.9697 17 6 5.9617 1.0693 -2.2460 18 6 6.2159 0.1031 -1.1176 19 6 6.0776 0.6465 -3.5568 20 6 5.8502 1.5352 -4.5925 21 17 6.0018 1.0068 -6.2391 22 6 5.5014 2.8450 -4.3154 23 6 5.3799 3.2650 -3.0042 24 6 4.9994 4.6915 -2.7022 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9564 -0.8901 32 1 3.9330 0.8359 -0.8302 33 1 3.9337 1.0275 0.9394 34 1 4.1186 2.9835 1.9436 35 1 4.4607 4.4899 1.0594 36 1 0.3304 5.4014 3.1993 37 1 5.8671 3.8482 -0.4460 38 1 6.0391 2.1659 0.1096 39 1 5.2872 -0.4052 -0.8584 40 1 6.9578 -0.6321 -1.4290 41 1 6.5864 0.6480 -0.2493 42 1 6.3499 -0.3760 -3.7725 43 1 5.3234 3.5391 -5.1236 44 1 5.9012 5.2987 -2.6213 45 1 4.3721 5.0781 -3.5054 46 1 4.4501 4.7297 -1.7615 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237357147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:10 Heat of formation + Delta-G solvation = 2.822627 kcal Electronic energy + Delta-G solvation = -24229.781123 eV Core-core repulsion = 20951.463055 eV Total energy + Delta-G solvation = -3278.318068 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97563 -37.29774 -36.39519 -34.06700 -33.59436 -32.74441 -31.62875 -28.70803 -28.30533 -26.90455 -26.69483 -24.47521 -22.70454 -20.96137 -20.73406 -20.39454 -19.74199 -16.77143 -16.32726 -16.18454 -15.43898 -14.96160 -14.55175 -14.35793 -13.96255 -13.62806 -13.40982 -13.14138 -12.96693 -12.93356 -12.72115 -12.63487 -12.51315 -12.39814 -12.18108 -11.78050 -11.43229 -11.39507 -11.21657 -11.18508 -10.87026 -10.80659 -10.75391 -10.58183 -10.42382 -10.16894 -10.07273 -9.98459 -9.59589 -9.10548 -8.55551 -8.52519 -8.35244 -7.38879 -6.05263 -4.00116 1.25199 1.36923 2.14728 3.25603 3.33703 3.35037 3.63784 4.40329 4.70939 4.83535 4.85279 5.05006 5.15672 5.24646 5.29994 5.42312 5.52035 5.57931 5.63561 5.66660 5.71453 5.76571 5.85215 5.89798 5.94947 5.97350 6.03778 6.14089 6.22164 6.28404 6.29847 6.41060 6.43760 6.45644 6.55678 6.60156 6.69751 6.76354 6.83112 6.90148 6.96792 7.12020 7.48531 7.62331 7.88063 8.03878 8.65601 9.06445 9.56261 11.06780 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.004200 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.289451 B = 6665.183917 C = 7423.823859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.121 4.121 4 C 0.067 3.933 5 N -0.518 5.518 6 C 0.158 3.842 7 C -0.502 4.502 8 H 0.092 0.908 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.867 3.133 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.082 3.918 16 C -0.060 4.060 17 C -0.067 4.067 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.031 4.031 21 Cl -0.084 7.084 22 C -0.122 4.122 23 C -0.041 4.041 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.020 0.980 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -8.399 -10.216 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.060 4.060 5 N -0.242 5.242 6 C 0.032 3.968 7 C -0.540 4.540 8 H 0.110 0.890 9 C -0.133 4.133 10 N -0.538 5.538 11 Si 0.695 3.305 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.046 4.046 16 C -0.061 4.061 17 C -0.068 4.068 18 C -0.177 4.177 19 C -0.141 4.141 20 C -0.058 4.058 21 Cl -0.056 7.056 22 C -0.141 4.141 23 C -0.041 4.041 24 C -0.179 4.179 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.264 -8.118 -10.588 16.833 hybrid contribution 1.020 -0.200 1.187 1.578 sum 11.284 -8.318 -9.401 16.879 Atomic orbital electron populations 1.21711 0.96267 1.00224 1.02273 1.21527 0.95723 0.98474 1.00249 1.21952 0.94132 0.94423 1.05380 1.22119 0.96719 0.89110 0.98096 1.61991 1.12917 1.12858 1.36384 1.20324 0.98724 0.92288 0.85456 1.21156 0.92542 1.36709 1.03616 0.89025 1.24885 0.94790 0.95602 0.97990 1.69883 1.13666 1.41428 1.28788 0.86995 0.81660 0.79147 0.82722 1.20307 1.21342 1.19359 1.21159 0.91849 1.00831 0.90765 1.19743 0.97955 0.92470 0.95940 1.19664 0.98911 0.94315 0.93885 1.21013 1.02290 0.97866 0.96577 1.20749 1.03117 0.99213 0.91028 1.20776 1.05410 0.94844 0.84739 1.98344 1.96558 1.90731 1.19941 1.20884 1.02123 0.94119 0.96935 1.19710 0.96233 0.96905 0.91300 1.20936 1.01409 0.90869 1.04734 0.93001 0.93925 0.92335 0.93538 0.93069 0.87596 0.92127 0.92341 0.96231 0.98942 0.96227 0.92748 0.90224 0.94340 0.90421 0.91721 0.90816 0.85543 0.85378 0.91632 0.91750 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.15 0.37 -1.89 16 2 C -0.12 -1.93 5.93 -26.74 -0.16 -2.09 16 3 C -0.12 -2.33 3.96 -26.73 -0.11 -2.43 16 4 C 0.07 1.21 4.35 -3.83 -0.02 1.19 16 5 N -0.52 -9.89 3.87 -237.51 -0.92 -10.80 16 6 C 0.16 3.54 3.86 -4.97 -0.02 3.52 16 7 C -0.50 -13.15 7.39 -34.44 -0.25 -13.40 16 8 H 0.09 2.61 6.40 -52.49 -0.34 2.28 16 9 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 10 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 11 Si 0.87 20.61 27.58 -169.99 -4.69 15.92 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.17 6.39 56.52 0.36 -5.81 16 15 C 0.08 1.30 4.00 -4.98 -0.02 1.28 16 16 C -0.06 -0.89 4.86 -104.62 -0.51 -1.40 16 17 C -0.07 -0.89 5.12 -104.63 -0.54 -1.42 16 18 C -0.12 -1.37 8.67 36.01 0.31 -1.06 16 19 C -0.12 -1.54 9.49 -39.55 -0.38 -1.92 16 20 C -0.03 -0.40 6.32 -39.50 -0.25 -0.65 16 21 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 22 C -0.12 -1.62 9.49 -39.55 -0.38 -2.00 16 23 C -0.04 -0.58 5.88 -104.63 -0.62 -1.20 16 24 C -0.12 -1.70 9.24 36.00 0.33 -1.37 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.11 2.43 5.54 -51.93 -0.29 2.14 16 31 H 0.06 1.25 7.98 -51.92 -0.41 0.83 16 32 H 0.06 0.95 4.31 -51.93 -0.22 0.73 16 33 H 0.02 0.35 7.80 -51.93 -0.41 -0.05 16 34 H -0.01 -0.16 6.43 -51.93 -0.33 -0.50 16 35 H 0.02 0.44 7.34 -51.93 -0.38 0.06 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.08 1.25 6.74 -51.93 -0.35 0.90 16 38 H 0.04 0.58 5.55 -51.93 -0.29 0.29 16 39 H 0.08 0.89 6.62 -51.93 -0.34 0.55 16 40 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.07 0.84 5.85 -51.93 -0.30 0.54 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 46 H 0.10 1.63 6.41 -51.93 -0.33 1.30 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -27.68 365.32 -10.55 -38.22 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.40 Total: 2.23 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.32 Total: -23.05 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.15 Total: -36.34 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.69 Total: 15.92 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.68 -10.55 -38.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237357147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.047 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds