Wall clock time and date at job start Tue Mar 31 2020 10:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 N 1.46898 * 109.47536 * 178.57122 * 3 2 1 5 5 C 1.46903 * 110.99378 * 59.38524 * 4 3 2 6 6 C 1.50701 * 109.47475 * 68.66564 * 5 4 3 7 7 H 1.07998 * 119.99720 * 5.15892 * 6 5 4 8 8 C 1.37879 * 119.99876 * 185.15987 * 6 5 4 9 9 N 1.31509 * 120.00336 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99643 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46730 * 89.99845 * 10 8 6 12 12 H 1.48494 * 109.46856 * 210.00021 * 10 8 6 13 13 H 1.48502 * 109.47267 * 330.00159 * 10 8 6 14 14 C 1.46900 * 111.00262 * 295.43447 * 4 3 2 15 15 C 1.50702 * 109.46647 * 287.67838 * 14 4 3 16 16 C 1.38278 * 119.97177 * 265.00683 * 15 14 4 17 17 C 1.38649 * 120.08618 * 180.02562 * 16 15 14 18 18 O 1.35980 * 119.98073 * 180.02562 * 17 16 15 19 19 C 1.42898 * 117.00118 * 180.02562 * 18 17 16 20 20 C 1.38705 * 120.04030 * 359.97438 * 17 16 15 21 21 C 1.38502 * 119.94464 * 359.81111 * 20 17 16 22 22 O 1.35986 * 120.04259 * 180.20628 * 21 20 17 23 23 C 1.42894 * 117.00615 * 0.23311 * 22 21 20 24 24 C 1.38489 * 119.97165 * 85.03600 * 15 14 4 25 25 O 1.36067 * 120.02198 * 359.97040 * 24 15 14 26 26 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47396 * 300.00406 * 1 2 3 28 28 H 1.09000 * 109.47138 * 59.99964 * 1 2 3 29 29 H 1.08994 * 109.47181 * 239.99483 * 2 1 3 30 30 H 1.09003 * 109.46708 * 119.99752 * 2 1 3 31 31 H 1.09004 * 109.47014 * 58.57626 * 3 2 1 32 32 H 1.08998 * 109.47204 * 298.57796 * 3 2 1 33 33 H 1.09001 * 109.46784 * 188.66356 * 5 4 3 34 34 H 1.08998 * 109.47061 * 308.65680 * 5 4 3 35 35 H 0.96996 * 120.00473 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.47257 * 167.68093 * 14 4 3 37 37 H 1.09000 * 109.47209 * 47.67449 * 14 4 3 38 38 H 1.07999 * 119.95404 * 359.97438 * 16 15 14 39 39 H 1.09004 * 109.46846 * 60.00152 * 19 18 17 40 40 H 1.09005 * 109.47590 * 180.02562 * 19 18 17 41 41 H 1.09003 * 109.47342 * 300.00538 * 19 18 17 42 42 H 1.07998 * 120.02980 * 180.02562 * 20 17 16 43 43 H 1.09003 * 109.47114 * 59.99797 * 23 22 21 44 44 H 1.08994 * 109.47866 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.47240 * 300.00091 * 23 22 21 46 46 H 0.96700 * 114.00039 * 90.00310 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5086 1.4426 0.0345 5 6 4.0624 0.7344 -1.1273 6 6 3.7891 1.5298 -2.3777 7 1 3.3318 2.5057 -2.3077 8 6 4.1228 1.0117 -3.6111 9 7 4.6801 -0.1765 -3.6963 10 14 3.7833 1.9974 -5.1611 11 1 4.9606 2.8461 -5.4757 12 1 3.5258 1.0693 -6.2913 13 1 2.5936 2.8604 -4.9483 14 6 4.0058 0.8640 1.2899 15 6 3.7562 1.8282 2.4209 16 6 4.7515 2.7037 2.8146 17 6 4.5246 3.5915 3.8552 18 8 5.5047 4.4518 4.2403 19 6 5.2026 5.3383 5.3195 20 6 3.2982 3.6033 4.5029 21 6 2.2987 2.7301 4.1068 22 8 1.0941 2.7428 4.7377 23 6 0.9267 3.6865 5.7975 24 6 2.5305 1.8363 3.0653 25 8 1.5516 0.9746 2.6773 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6560 1.9636 0.8770 32 1 1.6977 1.9489 -0.9024 33 1 5.1385 0.6148 -1.0007 34 1 3.5953 -0.2468 -1.2113 35 1 4.9145 -0.5412 -4.5640 36 1 5.0756 0.6741 1.2038 37 1 3.4853 -0.0727 1.4895 38 1 5.7071 2.6953 2.3114 39 1 4.9566 4.7577 6.2086 40 1 6.0676 5.9690 5.5248 41 1 4.3528 5.9648 5.0482 42 1 3.1215 4.2951 5.3131 43 1 1.0652 4.6960 5.4104 44 1 -0.0763 3.5918 6.2134 45 1 1.6634 3.4921 6.5770 46 1 1.5676 0.1264 3.1414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237676613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:04 Heat of formation + Delta-G solvation = -83.788792 kcal Electronic energy + Delta-G solvation = -26812.648394 eV Core-core repulsion = 23089.865408 eV Total energy + Delta-G solvation = -3722.782986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73823 -38.94077 -38.35877 -36.53955 -35.54959 -32.66163 -32.12504 -30.48136 -29.47351 -28.22245 -26.97967 -26.44020 -25.86076 -23.76795 -22.31114 -21.93303 -21.08510 -19.35919 -18.10447 -17.99229 -17.17445 -16.26464 -16.17227 -16.08028 -15.62313 -15.28683 -14.87055 -14.76463 -14.50248 -14.26373 -13.68965 -13.56597 -13.42370 -12.93087 -12.68484 -12.40614 -12.34997 -11.88640 -11.77100 -11.65617 -11.47067 -11.37711 -11.06920 -10.96075 -10.86557 -10.65669 -10.54788 -10.40947 -10.26009 -10.13395 -9.81777 -9.44027 -9.14186 -8.50606 -8.32953 -7.74421 -7.01514 -5.94297 -3.94172 1.32774 1.47847 3.12604 3.20190 3.37946 3.43550 3.48211 3.68240 4.37614 4.51120 4.71516 4.83679 4.86152 4.92568 4.95163 5.10777 5.23106 5.26143 5.27690 5.33093 5.40953 5.49447 5.60709 5.75766 5.80315 5.97545 6.12222 6.16027 6.20938 6.31323 6.43230 6.53506 6.64694 6.65202 6.73070 6.79917 6.96853 7.08846 7.25231 7.38709 7.42753 7.56048 7.91961 7.96392 8.20642 8.33437 8.66360 9.14335 9.69444 11.16314 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.004044 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.362762 B = 6921.480672 C = 8045.415258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.149 4.149 3 C 0.068 3.932 4 N -0.528 5.528 5 C 0.188 3.812 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.090 3.910 15 C -0.007 4.007 16 C -0.154 4.154 17 C 0.153 3.847 18 O -0.313 6.313 19 C 0.028 3.972 20 C -0.293 4.293 21 C 0.135 3.865 22 O -0.305 6.305 23 C 0.027 3.973 24 C 0.046 3.954 25 O -0.467 6.467 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.006 0.994 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.137 0.863 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.132 0.868 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 5.838 21.621 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.188 4.188 3 C -0.060 4.060 4 N -0.251 5.251 5 C 0.063 3.937 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.038 4.038 15 C -0.008 4.008 16 C -0.173 4.173 17 C 0.108 3.892 18 O -0.226 6.226 19 C -0.067 4.067 20 C -0.313 4.313 21 C 0.089 3.911 22 O -0.218 6.218 23 C -0.068 4.068 24 C 0.000 4.000 25 O -0.275 6.275 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.023 0.977 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.155 0.845 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.150 0.850 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.070 0.930 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.188 6.573 20.953 22.355 hybrid contribution -0.359 -0.343 -0.155 0.520 sum -4.547 6.230 20.798 22.182 Atomic orbital electron populations 1.21607 0.96779 1.00060 1.01208 1.22013 0.95330 1.00198 1.01236 1.22104 0.87505 0.94853 1.01555 1.62352 1.07362 1.54624 1.00719 1.19830 0.94534 0.92898 0.86424 1.21146 1.39386 1.03133 0.90093 0.92008 1.24952 0.95573 0.95022 0.99025 1.69950 1.42909 1.16692 1.24544 0.86547 0.78649 0.79786 0.82728 1.20740 1.21431 1.19898 1.20967 1.00604 0.93229 0.89009 1.19935 0.90379 0.95804 0.94718 1.20161 1.01481 0.97461 0.98213 1.18691 0.86629 0.90196 0.93700 1.86123 1.38075 1.47487 1.50926 1.23018 1.02719 0.92575 0.88381 1.21030 0.94916 1.07393 1.07916 1.19113 0.84588 0.95579 0.91823 1.86161 1.30786 1.57208 1.47621 1.23028 1.02829 0.92246 0.88731 1.17394 0.89627 0.96650 0.96325 1.85153 1.50313 1.28001 1.64044 0.94235 0.92847 0.93454 0.91570 0.92940 0.91117 0.91259 0.95948 0.97659 0.93083 0.90477 0.93738 0.84483 0.92972 0.88293 0.92844 0.85032 0.92864 0.88328 0.93015 0.77483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.15 -2.80 4.49 -26.73 -0.12 -2.92 16 3 C 0.07 1.40 4.60 -3.83 -0.02 1.39 16 4 N -0.53 -11.59 4.63 -237.52 -1.10 -12.69 16 5 C 0.19 4.88 4.51 -4.97 -0.02 4.86 16 6 C -0.50 -14.21 8.46 -34.44 -0.29 -14.50 16 7 H 0.06 1.78 7.47 -52.49 -0.39 1.39 16 8 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.09 1.64 4.85 -4.97 -0.02 1.61 16 15 C -0.01 -0.11 5.18 -104.51 -0.54 -0.65 16 16 C -0.15 -2.42 9.61 -39.42 -0.38 -2.80 16 17 C 0.15 2.17 6.68 -39.26 -0.26 1.90 16 18 O -0.31 -4.03 10.50 -19.68 -0.21 -4.24 16 19 C 0.03 0.23 9.81 101.05 0.99 1.22 16 20 C -0.29 -3.72 8.02 -39.31 -0.32 -4.03 16 21 C 0.14 1.90 6.70 -39.13 -0.26 1.63 16 22 O -0.30 -3.90 10.28 -34.26 -0.35 -4.25 16 23 C 0.03 0.22 9.81 101.05 0.99 1.21 16 24 C 0.05 0.70 5.67 -39.14 -0.22 0.48 16 25 O -0.47 -6.73 8.03 -34.52 -0.28 -7.00 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.82 7.89 -51.93 -0.41 0.41 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.46 6.29 -51.93 -0.33 1.13 16 30 H 0.05 0.90 5.18 -51.93 -0.27 0.64 16 31 H 0.07 1.41 4.92 -51.93 -0.26 1.16 16 32 H 0.07 1.60 7.17 -51.93 -0.37 1.22 16 33 H 0.02 0.62 7.80 -51.93 -0.40 0.21 16 34 H 0.01 0.16 5.89 -51.93 -0.31 -0.15 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 1.39 7.67 -51.93 -0.40 0.99 16 37 H 0.04 0.77 5.50 -51.93 -0.29 0.48 16 38 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 42 H 0.13 1.29 4.53 -52.49 -0.24 1.05 16 43 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 46 H 0.37 3.95 9.07 45.56 0.41 4.37 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -32.77 360.30 -7.08 -39.84 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.08 Total: 3.01 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.20 Total: -11.00 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.36 Total: -38.89 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.84 Total: -15.50 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.77 -7.08 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237676613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.944 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds