Wall clock time and date at job start Tue Mar 31 2020 09:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 117.00209 * 2 1 4 4 C 1.38728 * 120.06089 * 180.02562 * 3 2 1 5 5 C 1.38136 * 119.94802 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05659 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94857 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.46851 * 90.00042 * 7 6 5 9 9 C 1.42904 * 114.00313 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47396 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47153 * 304.99576 * 10 9 8 12 12 O 1.42898 * 109.47319 * 64.99884 * 10 9 8 13 13 C 1.53002 * 109.46817 * 184.99807 * 10 9 8 14 14 N 1.46906 * 109.46937 * 180.02562 * 13 10 9 15 15 C 1.46895 * 111.00089 * 180.02562 * 14 13 10 16 16 H 1.08999 * 109.47022 * 324.99432 * 15 14 13 17 17 C 1.53000 * 109.47380 * 84.99331 * 15 14 13 18 18 C 1.50695 * 109.47025 * 204.99969 * 15 14 13 19 19 H 1.07997 * 120.00457 * 359.97438 * 18 15 14 20 20 C 1.37877 * 120.00294 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00525 * 179.97438 * 20 18 15 22 22 Si 1.86803 * 119.99512 * 359.97438 * 20 18 15 23 23 H 1.48496 * 109.47430 * 90.00199 * 22 20 18 24 24 H 1.48502 * 109.47044 * 209.99904 * 22 20 18 25 25 H 1.48498 * 109.47318 * 329.99635 * 22 20 18 26 26 C 1.38276 * 120.10832 * 0.25130 * 6 5 4 27 27 C 1.38138 * 120.05351 * 359.45384 * 26 6 5 28 28 H 1.09001 * 109.46928 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47211 * 299.99657 * 1 2 3 30 30 H 1.08994 * 109.47099 * 59.99930 * 1 2 3 31 31 H 1.08001 * 120.02323 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.97599 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47276 * 330.00509 * 7 6 5 34 34 H 1.08998 * 109.47660 * 210.00284 * 7 6 5 35 35 H 1.09001 * 109.46993 * 59.99365 * 9 8 7 36 36 H 1.09004 * 109.46505 * 300.00140 * 9 8 7 37 37 H 0.96698 * 113.99898 * 59.99520 * 12 10 9 38 38 H 1.09002 * 109.47075 * 299.99262 * 13 10 9 39 39 H 1.08996 * 109.47407 * 60.00219 * 13 10 9 40 40 H 1.00902 * 111.00162 * 56.03669 * 14 13 10 41 41 H 1.09000 * 109.46649 * 179.97438 * 17 15 14 42 42 H 1.08992 * 109.47074 * 300.00142 * 17 15 14 43 43 H 1.09003 * 109.46595 * 60.00398 * 17 15 14 44 44 H 0.97001 * 120.00069 * 179.97438 * 21 20 18 45 45 H 1.07997 * 119.96693 * 179.70470 * 26 6 5 46 46 H 1.07998 * 120.02824 * 180.25381 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 8 4.2016 5.4444 -1.3441 9 6 4.8487 6.7136 -1.4560 10 6 5.0265 7.0670 -2.9339 11 1 5.5598 6.2613 -3.4386 12 8 3.7440 7.2419 -3.5395 13 6 5.8289 8.3641 -3.0552 14 7 5.9991 8.7037 -4.4743 15 6 6.7673 9.9461 -4.6298 16 1 6.5214 10.6295 -3.8170 17 6 8.2635 9.6285 -4.5939 18 6 6.4215 10.5888 -5.9482 19 1 5.7033 10.1209 -6.6052 20 6 7.0221 11.7742 -6.3159 21 7 6.7207 12.3348 -7.4667 22 14 8.2639 12.5838 -5.1793 23 1 9.6254 12.0835 -5.4968 24 1 8.2212 14.0562 -5.3680 25 1 7.9321 12.2557 -3.7695 26 6 1.9210 3.6048 0.0079 27 6 1.2915 2.3752 0.0013 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0208 0.3800 -0.0005 32 1 5.1345 2.5751 0.0000 33 1 4.9442 4.9378 0.5160 34 1 3.3583 5.7458 0.5177 35 1 5.8248 6.6676 -0.9730 36 1 4.2391 7.4762 -0.9712 37 1 3.2130 7.9444 -3.1400 38 1 5.2956 9.1697 -2.5506 39 1 6.8072 8.2307 -2.5933 40 1 5.1064 8.7694 -4.9400 41 1 8.8334 10.5504 -4.7098 42 1 8.5135 9.1637 -3.6403 43 1 8.5094 8.9452 -5.4068 44 1 7.1430 13.1689 -7.7252 45 1 1.3342 4.5114 0.0140 46 1 0.2129 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:04 Heat of formation + Delta-G solvation = -102.865720 kcal Electronic energy + Delta-G solvation = -24476.880136 eV Core-core repulsion = 20753.269913 eV Total energy + Delta-G solvation = -3723.610224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.48078 -38.84622 -37.91657 -36.73739 -35.37659 -32.47156 -31.77946 -31.35123 -30.54250 -28.66770 -27.89653 -25.73763 -25.15396 -23.88641 -22.98478 -21.66114 -21.21530 -19.87960 -18.52067 -17.23702 -16.84651 -16.52530 -16.50767 -16.15698 -16.08853 -15.64754 -15.38560 -14.88760 -14.57514 -14.05345 -13.99452 -13.77486 -13.52066 -13.38723 -13.08755 -12.89030 -12.61007 -12.38319 -12.16793 -12.13424 -11.82537 -11.60020 -11.36657 -11.29173 -11.13680 -10.93249 -10.68710 -10.55023 -10.11704 -9.87568 -9.75682 -9.47366 -9.30632 -9.02540 -8.61916 -8.48799 -7.51790 -6.10251 -4.10202 1.00703 1.05501 2.89246 3.21343 3.25464 3.33797 3.36876 3.77747 4.37066 4.41385 4.49761 4.54559 4.62376 4.67976 4.74208 4.90627 4.94232 4.99358 5.05594 5.09690 5.13736 5.22329 5.25725 5.30995 5.38013 5.39476 5.46124 5.65108 5.71141 5.91694 5.96810 6.01628 6.27843 6.31484 6.38377 6.41297 6.51595 6.69365 6.77716 7.01017 7.04310 7.37008 7.56867 7.83300 7.92261 8.36637 8.61175 8.95530 9.51522 11.02704 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.001917 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.663188 B =14600.138006 C =14889.770679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.155 4.155 5 C -0.058 4.058 6 C -0.125 4.125 7 C 0.105 3.895 8 O -0.370 6.370 9 C 0.031 3.969 10 C 0.113 3.887 11 H 0.112 0.888 12 O -0.548 6.548 13 C 0.031 3.969 14 N -0.673 5.673 15 C 0.182 3.818 16 H -0.001 1.001 17 C -0.138 4.138 18 C -0.520 4.520 19 H 0.080 0.920 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.270 1.270 26 C -0.056 4.056 27 C -0.211 4.211 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.368 0.632 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.348 0.652 41 H 0.037 0.963 42 H 0.024 0.976 43 H 0.059 0.941 44 H 0.264 0.736 45 H 0.126 0.874 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.303 -20.436 20.880 30.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.173 4.173 5 C -0.076 4.076 6 C -0.125 4.125 7 C 0.029 3.971 8 O -0.289 6.289 9 C -0.047 4.047 10 C 0.054 3.946 11 H 0.130 0.870 12 O -0.352 6.352 13 C -0.100 4.100 14 N -0.306 5.306 15 C 0.073 3.927 16 H 0.017 0.983 17 C -0.195 4.195 18 C -0.558 4.558 19 H 0.098 0.902 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.195 1.195 26 C -0.075 4.075 27 C -0.230 4.230 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.214 0.786 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.167 0.833 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.144 0.856 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.490 -21.477 20.130 30.928 hybrid contribution -0.201 1.984 1.424 2.450 sum -9.691 -19.493 21.554 30.634 Atomic orbital electron populations 1.23072 0.78273 1.04005 1.01491 1.86070 1.21512 1.27002 1.88620 1.19087 0.92433 0.84144 0.95852 1.20415 0.91374 0.98672 1.06879 1.20888 1.00008 0.90859 0.95861 1.19511 0.93570 0.94236 1.05181 1.21234 0.98579 0.92470 0.84867 1.88066 1.80000 1.35907 1.24940 1.23319 0.96864 0.85526 0.98970 1.22000 0.84576 0.98118 0.89936 0.87034 1.86663 1.28270 1.58995 1.61253 1.22522 0.99462 0.94884 0.93149 1.60399 1.23985 1.37599 1.08593 1.19541 0.90366 0.85875 0.96946 0.98326 1.22077 0.98517 0.99610 0.99336 1.21107 1.25912 1.06438 1.02331 0.90243 1.24943 0.96506 0.96753 0.94953 1.69891 1.43448 1.19090 1.21094 0.86791 0.81926 0.77377 0.81644 1.20492 1.22527 1.19524 1.20854 0.93841 0.97205 0.95562 1.21217 1.00100 0.92247 1.09409 0.88188 0.92626 0.92459 0.85018 0.85098 0.92603 0.92722 0.92388 0.93169 0.78617 0.95850 0.90896 0.83271 0.94495 0.95667 0.92236 0.92570 0.85579 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.92 10.50 -19.44 -0.20 -3.12 16 3 C 0.13 1.28 6.69 -39.22 -0.26 1.01 16 4 C -0.15 -1.48 9.99 -39.44 -0.39 -1.87 16 5 C -0.06 -0.55 9.69 -39.61 -0.38 -0.94 16 6 C -0.12 -1.26 5.51 -104.60 -0.58 -1.84 16 7 C 0.10 1.01 6.06 36.00 0.22 1.23 16 8 O -0.37 -4.69 10.29 -40.08 -0.41 -5.10 16 9 C 0.03 0.35 5.57 37.16 0.21 0.56 16 10 C 0.11 1.60 3.52 -26.73 -0.09 1.51 16 11 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 12 O -0.55 -8.27 12.64 -40.08 -0.51 -8.78 16 13 C 0.03 0.49 5.19 -3.82 -0.02 0.47 16 14 N -0.67 -13.81 6.30 -107.95 -0.68 -14.49 16 15 C 0.18 4.31 2.19 -68.87 -0.15 4.16 16 16 H 0.00 -0.02 6.85 -51.93 -0.36 -0.37 16 17 C -0.14 -3.08 8.90 37.16 0.33 -2.75 16 18 C -0.52 -14.65 9.17 -34.44 -0.32 -14.96 16 19 H 0.08 2.43 7.86 -52.49 -0.41 2.02 16 20 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 21 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 22 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 23 H -0.28 -6.72 6.87 56.52 0.39 -6.33 16 24 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 26 C -0.06 -0.53 9.69 -39.60 -0.38 -0.92 16 27 C -0.21 -1.89 9.04 -39.43 -0.36 -2.25 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.37 4.27 9.05 45.56 0.41 4.69 16 38 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 39 H 0.07 1.12 7.44 -51.93 -0.39 0.73 16 40 H 0.35 7.37 7.61 -39.29 -0.30 7.07 16 41 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 42 H 0.02 0.48 7.45 -51.93 -0.39 0.09 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.13 0.87 6.30 -52.49 -0.33 0.53 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -33.45 373.62 -7.38 -40.83 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.55 Total: 7.31 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.29 Total: -13.51 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.09 Total: -41.16 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.12 Total: -17.00 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.45 -7.38 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.040 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds