Wall clock time and date at job start Tue Mar 31 2020 09:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 14 14 N 1.46900 * 109.47557 * 64.99295 * 13 2 1 15 15 C 1.46472 * 110.99849 * 66.04676 * 14 13 2 16 16 C 1.53244 * 109.86083 * 197.76778 * 15 14 13 17 17 S 1.81897 * 108.50688 * 297.99699 * 16 15 14 18 18 C 1.81897 * 101.91418 * 51.30651 * 17 16 15 19 19 C 1.46466 * 111.00472 * 192.02832 * 14 13 2 20 20 H 1.09002 * 109.40703 * 282.35436 * 19 14 13 21 21 C 1.50699 * 109.40460 * 42.11882 * 19 14 13 22 22 C 1.39864 * 126.04470 * 40.02308 * 21 19 14 23 23 N 1.30831 * 108.20865 * 179.97438 * 22 21 19 24 24 N 1.40081 * 108.20423 * 0.02562 * 23 22 21 25 25 C 1.46503 * 126.03867 * 179.97438 * 24 23 22 26 26 C 1.34952 * 107.92345 * 359.75401 * 24 23 22 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 30 30 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 31 31 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 32 32 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47698 * 184.99641 * 13 2 1 34 34 H 1.09009 * 109.47010 * 304.99646 * 13 2 1 35 35 H 1.09000 * 109.40386 * 317.88735 * 15 14 13 36 36 H 1.08999 * 109.40560 * 77.72342 * 15 14 13 37 37 H 1.08997 * 109.63135 * 57.70569 * 16 15 14 38 38 H 1.09005 * 109.62970 * 178.29122 * 16 15 14 39 39 H 1.08998 * 109.62912 * 68.40072 * 18 17 16 40 40 H 1.09000 * 109.63106 * 188.79574 * 18 17 16 41 41 H 1.08005 * 125.89430 * 359.95792 * 22 21 19 42 42 H 1.09006 * 109.46771 * 89.97607 * 25 24 23 43 43 H 1.09001 * 109.46911 * 209.97441 * 25 24 23 44 44 H 1.08997 * 109.46982 * 329.97674 * 25 24 23 45 45 H 1.08001 * 126.12658 * 180.23886 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6756 -1.5191 3.8512 9 14 1.4976 0.5623 5.2497 10 1 0.0175 0.6686 5.3087 11 1 1.9927 -0.1377 6.4622 12 1 2.0895 1.9228 5.1876 13 6 2.0401 -0.7211 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.3320 1.3337 -2.4894 16 6 1.6078 2.2693 -3.4632 17 16 1.6779 1.5376 -5.1270 18 6 1.0685 -0.1489 -4.8215 19 6 1.8670 -0.7517 -3.6606 20 1 2.9279 -0.7489 -3.9107 21 6 1.4137 -2.1693 -3.4239 22 6 0.2723 -2.5611 -2.7169 23 7 0.2141 -3.8681 -2.7266 24 7 1.3187 -4.3501 -3.4406 25 6 1.6359 -5.7584 -3.6901 26 6 2.0363 -3.2878 -3.8623 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.1264 -0.7993 1.2056 31 1 1.6054 -1.7197 1.2951 32 1 2.9229 -1.8420 4.7318 33 1 3.1264 -0.7993 -1.2056 34 1 1.6055 -1.7198 -1.2951 35 1 2.3315 1.7767 -1.4934 36 1 3.3602 1.1918 -2.8221 37 1 0.5680 2.3833 -3.1568 38 1 2.0992 3.2423 -3.4701 39 1 0.0110 -0.1143 -4.5596 40 1 1.2044 -0.7552 -5.7170 41 1 -0.4382 -1.8991 -2.2443 42 1 1.1659 -6.0774 -4.6205 43 1 2.7164 -5.8790 -3.7689 44 1 1.2615 -6.3666 -2.8667 45 1 2.9459 -3.3241 -4.4435 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589822708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:05 Heat of formation + Delta-G solvation = 80.348273 kcal Electronic energy + Delta-G solvation = -24279.814962 eV Core-core repulsion = 21039.195116 eV Total energy + Delta-G solvation = -3240.619846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.37211 -38.45769 -34.95986 -33.48473 -32.34587 -31.89711 -29.80989 -29.30793 -26.80470 -26.67018 -25.07931 -23.44882 -22.83366 -21.57790 -20.91177 -19.66556 -18.79242 -17.18062 -16.35314 -16.32236 -15.57340 -15.27751 -14.98061 -14.52660 -14.32843 -14.16818 -14.04191 -13.95353 -13.25447 -13.06896 -12.76531 -12.67575 -12.55724 -12.47677 -12.29844 -11.85680 -11.60775 -11.40085 -11.30229 -11.00703 -10.83017 -10.71354 -10.54290 -10.28681 -10.21240 -9.83542 -9.53859 -9.30771 -9.11574 -8.93458 -8.35641 -8.30552 -8.09211 -7.66563 -5.95659 -3.96783 1.78091 1.90080 2.45772 2.56654 2.85588 3.35361 3.39823 3.42147 3.92141 4.47280 4.50335 4.76168 4.91874 4.96463 4.98711 5.07950 5.16794 5.24844 5.28422 5.29222 5.40136 5.40809 5.43117 5.70229 5.73564 5.84519 5.89068 5.93938 6.00901 6.12622 6.22090 6.46953 6.55842 6.68079 6.69518 6.95470 7.01220 7.13987 7.22658 7.37987 7.41566 7.71483 7.74617 7.87832 8.04670 8.48355 9.09498 9.66501 11.15825 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.004483 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.794613 B = 6244.573620 C = 8124.848244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.029 3.971 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.062 3.938 14 N -0.539 5.539 15 C 0.052 3.948 16 C -0.068 4.068 17 S -0.291 6.291 18 C -0.057 4.057 19 C 0.169 3.831 20 H 0.053 0.947 21 C -0.229 4.229 22 C 0.080 3.920 23 N -0.297 5.297 24 N -0.380 5.380 25 C 0.104 3.896 26 C 0.058 3.942 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.010 0.990 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.025 0.975 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.187 0.813 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -1.982 -19.795 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.008 4.008 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.264 5.264 15 C -0.077 4.077 16 C -0.217 4.217 17 S -0.064 6.064 18 C -0.205 4.205 19 C 0.058 3.942 20 H 0.071 0.929 21 C -0.243 4.243 22 C -0.107 4.107 23 N -0.118 5.118 24 N -0.162 5.162 25 C -0.038 4.038 26 C -0.088 4.088 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.203 0.797 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.395 -2.719 -20.282 20.511 hybrid contribution 0.800 0.419 1.723 1.945 sum -0.595 -2.300 -18.560 18.711 Atomic orbital electron populations 1.21590 0.95821 1.00457 1.00113 1.21249 0.95917 0.98856 0.93859 0.92707 1.19091 0.95765 0.95537 0.90440 1.21186 1.34598 1.08245 0.90971 0.92651 1.25009 0.95348 0.95057 0.99046 1.69958 1.39077 1.21229 1.23413 0.86713 0.78925 0.80100 0.82578 1.20260 1.21415 1.20331 1.22429 0.97598 0.98051 0.88410 1.61197 1.59529 1.03543 1.02161 1.22285 0.95090 0.89863 1.00455 1.23523 1.05074 1.00545 0.92541 1.86770 1.87525 1.14861 1.17243 1.23539 1.03106 0.93197 1.00702 1.19876 0.96847 0.87731 0.89793 0.92879 1.19787 1.00189 0.94247 1.10080 1.23814 0.97561 0.91820 0.97490 1.77445 1.05991 1.11975 1.16367 1.48422 1.19609 1.06200 1.41955 1.21810 1.01748 0.77381 1.02817 1.22209 0.98514 0.86943 1.01155 0.93982 0.94197 0.92795 0.97142 0.96704 0.93099 0.95634 0.89861 0.88431 0.93871 0.88927 0.87879 0.89061 0.88168 0.79666 0.91033 0.89670 0.89240 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.89 37.16 0.33 -1.96 16 2 C -0.08 -1.58 2.28 -90.62 -0.21 -1.79 16 3 H 0.05 1.09 6.09 -51.92 -0.32 0.77 16 4 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 5 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.06 1.04 3.85 -3.83 -0.01 1.03 16 14 N -0.54 -7.43 3.62 -228.43 -0.83 -8.25 16 15 C 0.05 0.68 5.29 -3.93 -0.02 0.66 16 16 C -0.07 -0.77 6.69 37.28 0.25 -0.52 16 17 S -0.29 -3.45 22.40 -107.50 -2.41 -5.86 16 18 C -0.06 -0.63 5.95 37.29 0.22 -0.41 16 19 C 0.17 2.06 2.32 -68.97 -0.16 1.90 16 20 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 21 C -0.23 -2.90 3.72 -105.06 -0.39 -3.29 16 22 C 0.08 1.15 9.54 -17.37 -0.17 0.98 16 23 N -0.30 -4.49 12.58 30.62 0.39 -4.11 16 24 N -0.38 -4.57 4.01 -68.16 -0.27 -4.84 16 25 C 0.10 0.79 11.47 59.85 0.69 1.48 16 26 C 0.06 0.65 11.40 -17.22 -0.20 0.45 16 27 H 0.04 0.69 7.75 -51.93 -0.40 0.28 16 28 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.08 1.49 4.65 -51.92 -0.24 1.25 16 35 H 0.10 1.36 5.82 -51.93 -0.30 1.06 16 36 H 0.04 0.56 7.91 -51.93 -0.41 0.15 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.19 2.65 8.06 -52.48 -0.42 2.23 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -31.84 364.56 -9.54 -41.38 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.44 Total: -0.29 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.18 Total: -13.87 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.02 Total: -43.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.41 Total: -5.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.84 -9.54 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589822708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.730 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds