Wall clock time and date at job start Tue Mar 31 2020 09:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 14 14 N 1.46900 * 109.47557 * 64.99295 * 13 2 1 15 15 C 1.46472 * 110.99849 * 66.04676 * 14 13 2 16 16 C 1.53244 * 109.86083 * 197.76778 * 15 14 13 17 17 S 1.81897 * 108.50688 * 297.99699 * 16 15 14 18 18 C 1.81897 * 101.91418 * 51.30651 * 17 16 15 19 19 C 1.46466 * 111.00472 * 192.02832 * 14 13 2 20 20 H 1.09002 * 109.40703 * 282.35436 * 19 14 13 21 21 C 1.50699 * 109.40460 * 42.11882 * 19 14 13 22 22 C 1.39864 * 126.04470 * 40.02308 * 21 19 14 23 23 N 1.30831 * 108.20865 * 179.97438 * 22 21 19 24 24 N 1.40081 * 108.20423 * 0.02562 * 23 22 21 25 25 C 1.46503 * 126.03867 * 179.97438 * 24 23 22 26 26 C 1.34952 * 107.92345 * 359.75401 * 24 23 22 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 30 30 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 31 31 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 32 32 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47698 * 184.99641 * 13 2 1 34 34 H 1.09009 * 109.47010 * 304.99646 * 13 2 1 35 35 H 1.09000 * 109.40386 * 317.88735 * 15 14 13 36 36 H 1.08999 * 109.40560 * 77.72342 * 15 14 13 37 37 H 1.08997 * 109.63135 * 57.70569 * 16 15 14 38 38 H 1.09005 * 109.62970 * 178.29122 * 16 15 14 39 39 H 1.08998 * 109.62912 * 68.40072 * 18 17 16 40 40 H 1.09000 * 109.63106 * 188.79574 * 18 17 16 41 41 H 1.08005 * 125.89430 * 359.95792 * 22 21 19 42 42 H 1.09006 * 109.46771 * 89.97607 * 25 24 23 43 43 H 1.09001 * 109.46911 * 209.97441 * 25 24 23 44 44 H 1.08997 * 109.46982 * 329.97674 * 25 24 23 45 45 H 1.08001 * 126.12658 * 180.23886 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6756 -1.5191 3.8512 9 14 1.4976 0.5623 5.2497 10 1 0.0175 0.6686 5.3087 11 1 1.9927 -0.1377 6.4622 12 1 2.0895 1.9228 5.1876 13 6 2.0401 -0.7211 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.3320 1.3337 -2.4894 16 6 1.6078 2.2693 -3.4632 17 16 1.6779 1.5376 -5.1270 18 6 1.0685 -0.1489 -4.8215 19 6 1.8670 -0.7517 -3.6606 20 1 2.9279 -0.7489 -3.9107 21 6 1.4137 -2.1693 -3.4239 22 6 0.2723 -2.5611 -2.7169 23 7 0.2141 -3.8681 -2.7266 24 7 1.3187 -4.3501 -3.4406 25 6 1.6359 -5.7584 -3.6901 26 6 2.0363 -3.2878 -3.8623 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.1264 -0.7993 1.2056 31 1 1.6054 -1.7197 1.2951 32 1 2.9229 -1.8420 4.7318 33 1 3.1264 -0.7993 -1.2056 34 1 1.6055 -1.7198 -1.2951 35 1 2.3315 1.7767 -1.4934 36 1 3.3602 1.1918 -2.8221 37 1 0.5680 2.3833 -3.1568 38 1 2.0992 3.2423 -3.4701 39 1 0.0110 -0.1143 -4.5596 40 1 1.2044 -0.7552 -5.7170 41 1 -0.4382 -1.8991 -2.2443 42 1 1.1659 -6.0774 -4.6205 43 1 2.7164 -5.8790 -3.7689 44 1 1.2615 -6.3666 -2.8667 45 1 2.9459 -3.3241 -4.4435 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589822708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:04 Heat of formation + Delta-G solvation = 61.691680 kcal Electronic energy + Delta-G solvation = -24280.623973 eV Core-core repulsion = 21039.195116 eV Total energy + Delta-G solvation = -3241.428857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.33453 -39.64202 -36.62475 -34.49722 -34.16902 -32.95440 -31.07698 -30.24142 -28.71798 -27.49776 -26.59338 -24.59220 -24.41906 -22.78294 -21.82949 -20.69642 -20.39083 -18.53909 -18.06405 -17.22587 -16.71247 -16.43994 -16.26861 -16.07647 -15.57130 -15.23650 -15.19405 -14.95149 -14.46957 -14.33672 -14.05122 -13.86530 -13.70296 -13.44130 -13.36961 -13.17858 -13.15215 -12.76213 -12.70511 -12.56533 -12.47572 -12.22511 -12.06324 -11.93429 -11.55612 -11.28651 -11.01315 -10.95380 -10.62096 -10.50996 -10.30232 -9.32018 -9.23758 -8.60128 -8.16318 -6.25406 0.88182 0.98653 1.40243 1.43009 1.50433 1.55941 1.72988 1.86817 2.42369 2.81707 3.17296 3.64209 3.92610 3.95975 4.03276 4.12813 4.23963 4.26282 4.31899 4.39132 4.45149 4.46321 4.51694 4.54270 4.59522 4.70610 4.77156 4.86001 4.90614 4.96072 5.01095 5.03257 5.08835 5.17497 5.31527 5.49508 5.52925 5.56534 5.67258 5.83077 5.90568 6.07467 6.14433 6.27115 6.32586 6.76634 6.90756 7.42972 8.95641 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.004483 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.794613 B = 6244.573620 C = 8124.848244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 H 0.058 0.942 4 C 0.037 3.963 5 C -0.526 4.526 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.081 3.919 14 N -0.537 5.537 15 C 0.052 3.948 16 C -0.061 4.061 17 S -0.299 6.299 18 C -0.047 4.047 19 C 0.175 3.825 20 H 0.057 0.943 21 C -0.245 4.245 22 C 0.067 3.933 23 N -0.339 5.339 24 N -0.381 5.381 25 C 0.094 3.906 26 C 0.069 3.931 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.036 0.964 30 H -0.019 1.019 31 H -0.018 1.018 32 H 0.261 0.739 33 H 0.011 0.989 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.177 0.823 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -1.108 -21.282 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.046 4.046 14 N -0.261 5.261 15 C -0.077 4.077 16 C -0.209 4.209 17 S -0.072 6.072 18 C -0.196 4.196 19 C 0.065 3.935 20 H 0.075 0.925 21 C -0.259 4.259 22 C -0.119 4.119 23 N -0.161 5.161 24 N -0.162 5.162 25 C -0.046 4.046 26 C -0.079 4.079 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.000 1.000 31 H 0.000 1.000 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.194 0.806 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.101 0.899 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.298 -1.838 -21.789 21.905 hybrid contribution 0.807 0.064 2.127 2.276 sum -0.491 -1.774 -19.662 19.748 Atomic orbital electron populations 1.21457 0.94692 1.00064 1.00506 1.21043 0.96652 0.98432 0.92731 0.92371 1.18957 0.93719 0.94376 0.93010 1.21600 1.34282 1.08543 0.91955 0.91944 1.25940 0.95278 0.96037 1.02630 1.70106 1.40419 1.23031 1.24214 0.85591 0.78927 0.78866 0.78225 1.19287 1.21185 1.19070 1.22023 0.96297 0.97596 0.88714 1.61130 1.59523 1.03747 1.01729 1.22300 0.95415 0.89533 1.00420 1.23483 1.04963 1.00773 0.91703 1.86836 1.87511 1.15386 1.17427 1.23490 1.02433 0.92895 1.00737 1.19862 0.97194 0.87411 0.89078 0.92522 1.19867 1.00149 0.94967 1.10903 1.23768 0.98246 0.91805 0.98045 1.77356 1.08124 1.12471 1.18156 1.48779 1.18679 1.07884 1.40906 1.22170 1.03801 0.75144 1.03469 1.22789 0.98900 0.86090 1.00079 0.91252 0.95008 0.94502 1.00043 0.99972 0.93064 0.97071 0.90761 0.89552 0.93763 0.88968 0.86174 0.89566 0.86540 0.80645 0.89022 0.86842 0.89935 0.77504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.89 71.98 0.64 -3.49 16 2 C -0.07 -2.82 2.28 -10.80 -0.02 -2.84 16 3 H 0.06 2.32 6.09 -2.38 -0.01 2.30 16 4 C 0.04 1.97 4.45 29.85 0.13 2.10 16 5 C -0.53 -29.82 8.41 25.60 0.22 -29.60 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16 9 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.08 2.78 3.85 86.30 0.33 3.11 16 14 N -0.54 -14.30 3.62 -876.62 -3.17 -17.48 16 15 C 0.05 1.29 5.29 86.47 0.46 1.75 16 16 C -0.06 -1.25 6.69 72.06 0.48 -0.77 16 17 S -0.30 -6.41 22.40 -56.49 -1.27 -7.68 16 18 C -0.05 -0.94 5.95 72.07 0.43 -0.51 16 19 C 0.18 4.00 2.32 44.34 0.10 4.10 16 20 H 0.06 1.29 7.91 -2.39 -0.02 1.27 16 21 C -0.25 -5.94 3.72 -20.15 -0.07 -6.02 16 22 C 0.07 1.95 9.54 85.24 0.81 2.76 16 23 N -0.34 -10.34 12.58 -57.03 -0.72 -11.06 16 24 N -0.38 -8.68 4.01 -369.55 -1.48 -10.17 16 25 C 0.09 1.26 11.47 127.77 1.47 2.72 16 26 C 0.07 1.39 11.40 83.54 0.95 2.35 16 27 H 0.07 2.21 7.75 -2.39 -0.02 2.19 16 28 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.04 1.49 6.95 -2.39 -0.02 1.47 16 30 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 31 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.01 0.41 8.12 -2.39 -0.02 0.39 16 34 H 0.07 2.73 4.65 -2.38 -0.01 2.72 16 35 H 0.09 2.33 5.82 -2.39 -0.01 2.32 16 36 H 0.04 1.09 7.91 -2.39 -0.02 1.07 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.18 5.21 8.06 -2.91 -0.02 5.18 16 42 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.21 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -70.39 364.56 3.01 -67.37 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.96 Total: 13.94 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 6.38 Total: -23.98 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -5.09 Total: -96.46 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -1.27 Total: -7.68 kcal Total: -70.39 3.01 -67.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589822708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.064 kcal (2) G-P(sol) polarization free energy of solvation -70.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds