Wall clock time and date at job start Tue Mar 31 2020 09:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99749 * 2 1 4 4 C 1.53010 * 109.46776 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47024 * 174.99716 * 4 3 2 6 6 C 1.53000 * 109.47077 * 54.99659 * 4 3 2 7 7 N 1.46901 * 109.47111 * 294.99694 * 4 3 2 8 8 C 1.46899 * 111.00092 * 205.00157 * 7 4 3 9 9 C 1.52997 * 109.46974 * 180.02562 * 8 7 4 10 10 H 1.08997 * 109.47530 * 60.00075 * 9 8 7 11 11 O 1.42902 * 109.47173 * 299.99488 * 9 8 7 12 12 C 1.53004 * 109.46973 * 180.02562 * 9 8 7 13 13 O 1.42901 * 109.46838 * 184.99713 * 12 9 8 14 14 C 1.35677 * 116.99623 * 179.97438 * 13 12 9 15 15 C 1.39319 * 119.81548 * 359.73242 * 14 13 12 16 16 C 1.36441 * 120.17808 * 179.75599 * 15 14 13 17 17 C 1.40830 * 119.81612 * 0.51526 * 16 15 14 18 18 C 1.41212 * 120.18243 * 179.71990 * 17 16 15 19 19 H 1.08000 * 120.00030 * 155.16019 * 18 17 16 20 20 C 1.39897 * 119.99753 * 335.16345 * 18 17 16 21 21 N 1.30878 * 119.99619 * 342.15797 * 20 18 17 22 22 Si 1.86799 * 120.00077 * 162.15962 * 20 18 17 23 23 H 1.48501 * 109.47334 * 94.65288 * 22 20 18 24 24 H 1.48498 * 109.47025 * 214.65687 * 22 20 18 25 25 H 1.48505 * 109.47151 * 334.65434 * 22 20 18 26 26 C 1.40831 * 119.63945 * 359.73355 * 17 16 15 27 27 C 1.36437 * 119.81367 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.47396 * 300.00559 * 1 2 3 29 29 H 1.09002 * 109.46823 * 60.00725 * 1 2 3 30 30 H 1.08994 * 109.47190 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47506 * 59.99773 * 3 2 1 32 32 H 1.08998 * 109.46939 * 299.99282 * 3 2 1 33 33 H 1.09003 * 109.47097 * 299.99955 * 6 4 3 34 34 H 1.09000 * 109.46934 * 59.99964 * 6 4 3 35 35 H 1.09001 * 109.47125 * 179.97438 * 6 4 3 36 36 H 1.00906 * 110.99834 * 328.95468 * 7 4 3 37 37 H 1.09003 * 109.46858 * 299.99714 * 8 7 4 38 38 H 1.08997 * 109.46931 * 59.99819 * 8 7 4 39 39 H 0.96694 * 114.00498 * 300.00498 * 11 9 8 40 40 H 1.08997 * 109.46815 * 304.99524 * 12 9 8 41 41 H 1.08998 * 109.47010 * 64.99425 * 12 9 8 42 42 H 1.07993 * 119.91026 * 0.02562 * 15 14 13 43 43 H 1.07999 * 120.08976 * 180.24636 * 16 15 14 44 44 H 0.97001 * 119.99327 * 180.02562 * 21 20 18 45 45 H 1.08007 * 120.09652 * 179.97438 * 26 17 16 46 46 H 1.07998 * 119.91061 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0890 6 6 3.9791 0.3193 -1.1806 7 7 3.9769 0.5628 1.2562 8 6 5.3587 0.9455 1.5760 9 6 5.7820 0.2795 2.8867 10 1 5.7203 -0.8035 2.7805 11 8 4.9141 0.7051 3.9393 12 6 7.2209 0.6787 3.2202 13 8 7.6561 -0.0333 4.3802 14 6 8.9195 0.2069 4.8123 15 6 9.7269 1.1103 4.1246 16 6 10.9969 1.3612 4.5556 17 6 11.4947 0.6959 5.6926 18 6 12.8100 0.9452 6.1419 19 1 13.0672 0.7802 7.1778 20 6 13.7799 1.4060 5.2452 21 7 13.5924 1.2789 3.9562 22 14 15.3426 2.2027 5.8877 23 1 16.4158 1.1809 5.9837 24 1 15.7669 3.2805 4.9583 25 1 15.0873 2.7803 7.2318 26 6 10.6738 -0.2197 6.3789 27 6 9.4044 -0.4556 5.9378 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.5360 -0.6726 -1.0910 34 1 3.6515 0.7807 -2.1122 35 1 5.0657 0.2336 -1.1804 36 1 3.3526 0.7955 2.0140 37 1 6.0207 0.6205 0.7734 38 1 5.4204 2.0286 1.6818 39 1 4.9179 1.6602 4.0903 40 1 7.8698 0.4344 2.3792 41 1 7.2650 1.7505 3.4138 42 1 9.3449 1.6167 3.2505 43 1 11.6201 2.0647 4.0236 44 1 14.2651 1.5981 3.3345 45 1 11.0482 -0.7344 7.2515 46 1 8.7737 -1.1578 6.4627 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604468310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:25 Heat of formation + Delta-G solvation = -119.214918 kcal Electronic energy + Delta-G solvation = -24749.500486 eV Core-core repulsion = 21025.181308 eV Total energy + Delta-G solvation = -3724.319178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.22373 -38.68793 -37.66301 -36.26498 -35.58266 -33.33262 -31.82227 -29.82839 -29.56606 -28.66634 -27.67796 -26.09697 -25.12504 -24.21757 -21.91704 -20.95531 -20.78283 -20.27581 -17.36916 -17.19762 -17.03313 -16.57042 -16.34522 -16.26691 -15.77650 -15.15470 -14.91102 -14.65629 -14.22665 -13.93275 -13.84434 -13.79780 -13.35209 -12.78459 -12.67565 -12.46155 -12.38405 -12.08187 -12.00257 -11.96351 -11.75167 -11.42703 -11.35947 -11.11769 -11.07489 -11.02213 -10.79534 -10.56316 -10.06324 -9.97948 -9.86638 -9.78716 -9.35782 -9.00849 -8.61861 -7.64936 -7.00092 -6.72748 -4.24629 2.77099 2.97023 3.07823 3.12221 3.21803 3.42155 3.56719 3.95160 4.25409 4.43368 4.51345 4.62122 4.66941 4.90067 4.97310 4.99021 5.01487 5.08608 5.11765 5.19496 5.35627 5.35999 5.41391 5.46722 5.63151 5.66966 5.69870 5.73977 6.10422 6.11078 6.19526 6.29716 6.69532 6.73984 6.89314 6.89965 7.07265 7.20445 7.28482 7.41578 7.56612 7.64606 7.91057 8.00741 8.16174 8.45538 8.65784 8.90593 8.99951 10.22187 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.002082 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.647080 B =13444.278672 C =14058.193243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.061 3.939 4 C 0.085 3.915 5 H 0.055 0.945 6 C -0.137 4.137 7 N -0.671 5.671 8 C 0.031 3.969 9 C 0.113 3.887 10 H 0.115 0.885 11 O -0.550 6.550 12 C 0.040 3.960 13 O -0.318 6.318 14 C -0.009 4.009 15 C -0.175 4.175 16 C -0.134 4.134 17 C 0.086 3.914 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.195 4.195 27 C -0.112 4.112 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.349 0.651 37 H 0.085 0.915 38 H 0.033 0.967 39 H 0.368 0.632 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.279 0.721 45 H 0.100 0.900 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.308 3.430 -9.889 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.017 4.017 4 C -0.025 4.025 5 H 0.073 0.927 6 C -0.195 4.195 7 N -0.305 5.305 8 C -0.099 4.099 9 C 0.054 3.946 10 H 0.133 0.867 11 O -0.354 6.354 12 C -0.038 4.038 13 O -0.234 6.234 14 C -0.052 4.052 15 C -0.194 4.194 16 C -0.154 4.154 17 C 0.084 3.916 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.427 5.427 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.215 4.215 27 C -0.131 4.131 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.169 0.831 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.214 0.786 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.138 0.862 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.153 1.942 -10.297 21.832 hybrid contribution 0.790 2.354 0.109 2.485 sum -18.363 4.296 -10.188 21.434 Atomic orbital electron populations 1.22750 0.81488 1.02834 0.99640 1.88015 1.19027 1.26795 1.95236 1.22713 0.93439 0.85421 1.00107 1.21624 0.92343 0.96526 0.91959 0.92745 1.21697 1.01122 1.01261 0.95395 1.60292 1.02677 1.62599 1.04898 1.22602 0.91542 0.97433 0.98335 1.21959 0.86680 1.01153 0.84831 0.86749 1.86652 1.65739 1.27729 1.55285 1.23096 0.95278 0.96118 0.89288 1.85869 1.29222 1.64683 1.43585 1.18606 0.83927 1.03859 0.98843 1.20593 0.96467 1.01784 1.00528 1.20924 0.93393 1.01491 0.99571 1.17599 0.92914 0.89531 0.91538 1.19462 0.93896 1.39383 0.96575 0.90496 1.25877 1.00165 0.93726 0.94423 1.69845 1.34867 1.35315 1.02686 0.86338 0.81087 0.79485 0.80020 1.19635 1.20161 1.18486 1.20607 0.94567 1.02781 1.03524 1.19627 0.96154 1.01323 0.96021 0.94214 0.94402 0.89559 0.93445 0.92805 0.90871 0.92951 0.92763 0.83128 0.89695 0.94869 0.78591 0.92251 0.93105 0.88944 0.86201 0.91046 0.88185 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.57 9.77 -35.23 -0.34 -3.92 16 3 C 0.06 0.46 5.49 37.16 0.20 0.67 16 4 C 0.09 0.73 3.02 -67.71 -0.20 0.53 16 5 H 0.05 0.42 7.80 -51.93 -0.40 0.01 16 6 C -0.14 -1.22 9.22 37.16 0.34 -0.88 16 7 N -0.67 -6.83 6.26 -106.72 -0.67 -7.50 16 8 C 0.03 0.31 5.19 -3.83 -0.02 0.29 16 9 C 0.11 1.47 3.52 -26.73 -0.09 1.38 16 10 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 11 O -0.55 -7.29 12.64 -40.12 -0.51 -7.80 16 12 C 0.04 0.62 4.36 37.16 0.16 0.79 16 13 O -0.32 -6.63 10.09 -23.62 -0.24 -6.87 16 14 C -0.01 -0.21 6.71 -38.78 -0.26 -0.48 16 15 C -0.17 -4.13 8.96 -39.83 -0.36 -4.48 16 16 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 17 C 0.09 2.33 5.57 -106.81 -0.59 1.73 16 18 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.82 10.97 55.55 0.61 -20.21 16 22 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.20 -4.88 9.74 -39.25 -0.38 -5.27 16 27 C -0.11 -2.68 9.92 -39.83 -0.40 -3.08 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.33 8.02 -51.93 -0.42 -0.09 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.49 7.45 -51.93 -0.39 0.11 16 36 H 0.35 3.54 7.67 -39.29 -0.30 3.24 16 37 H 0.08 0.87 7.44 -51.93 -0.39 0.48 16 38 H 0.03 0.30 8.05 -51.93 -0.42 -0.12 16 39 H 0.37 3.58 9.04 45.56 0.41 3.99 16 40 H 0.06 0.92 7.63 -51.93 -0.40 0.53 16 41 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 42 H 0.09 1.92 6.27 -52.49 -0.33 1.59 16 43 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 44 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 45 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 46 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -30.43 378.12 -8.41 -38.85 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.67 Total: 10.29 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -1.26 Total: -22.24 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: -0.06 Total: -27.70 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.09 Total: -18.58 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.43 -8.41 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604468310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.369 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds