Wall clock time and date at job start Tue Mar 31 2020 09:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47604 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47196 * 300.00542 * 3 2 1 6 6 H 1.48507 * 109.47069 * 60.00087 * 3 2 1 7 7 C 1.37877 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00247 * 176.05681 * 7 2 1 9 9 C 1.50702 * 119.99869 * 356.06256 * 7 2 1 10 10 C 1.53003 * 115.55136 * 85.53702 * 9 7 2 11 11 O 1.42892 * 109.47242 * 65.33784 * 10 9 7 12 12 N 1.41604 * 114.00133 * 184.22612 * 11 10 9 13 13 C 1.36999 * 119.99895 * 180.44387 * 12 11 10 14 14 N 1.29325 * 120.00350 * 5.53447 * 13 12 11 15 15 C 1.50703 * 119.99865 * 185.53760 * 13 12 11 16 16 C 1.50703 * 109.47166 * 283.57795 * 15 13 12 17 17 O 1.21278 * 119.99900 * 355.43033 * 16 15 13 18 18 N 1.34772 * 119.99926 * 175.43716 * 16 15 13 19 19 C 1.46926 * 120.62999 * 359.71196 * 18 16 15 20 20 C 1.53635 * 108.54008 * 126.37152 * 19 18 16 21 21 C 1.53039 * 109.23868 * 54.85955 * 20 19 18 22 22 C 1.53046 * 109.53656 * 298.50695 * 21 20 19 23 23 C 1.46921 * 120.63033 * 179.97438 * 18 16 15 24 24 C 1.53005 * 117.49721 * 231.20694 * 9 7 2 25 25 C 1.53007 * 117.49802 * 299.86722 * 9 7 2 26 26 H 0.96999 * 120.00116 * 5.04765 * 1 2 3 27 27 H 1.09005 * 109.47076 * 305.33339 * 10 9 7 28 28 H 1.09003 * 109.46847 * 185.33908 * 10 9 7 29 29 H 0.97000 * 119.99762 * 0.16666 * 12 11 10 30 30 H 0.96999 * 120.00078 * 184.80806 * 14 13 12 31 31 H 1.09000 * 109.46791 * 43.57387 * 15 13 12 32 32 H 1.08993 * 109.47350 * 163.57135 * 15 13 12 33 33 H 1.08999 * 109.58833 * 246.20159 * 19 18 16 34 34 H 1.08999 * 109.58890 * 6.63547 * 19 18 16 35 35 H 1.08995 * 109.63234 * 294.86596 * 20 19 18 36 36 H 1.09001 * 109.45262 * 174.73676 * 20 19 18 37 37 H 1.09002 * 109.45772 * 178.48929 * 21 20 19 38 38 H 1.08993 * 109.46535 * 58.53106 * 21 20 19 39 39 H 1.08999 * 109.49941 * 301.41933 * 22 21 20 40 40 H 1.09003 * 109.49408 * 181.31926 * 22 21 20 41 41 H 1.09003 * 109.58688 * 353.37099 * 23 18 16 42 42 H 1.08998 * 109.58716 * 113.79496 * 23 18 16 43 43 H 1.09004 * 117.49654 * 215.00030 * 24 9 7 44 44 H 1.08999 * 117.50143 * 0.02562 * 24 9 7 45 45 H 1.08997 * 117.49410 * 359.97438 * 25 9 7 46 46 H 1.08997 * 117.49583 * 144.97579 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0826 -1.1951 -0.0648 9 6 1.2537 -2.4977 0.0885 10 6 0.7502 -3.0614 -1.2418 11 8 1.8656 -3.4111 -2.0636 12 7 1.5089 -3.8569 -3.3595 13 6 2.4827 -4.2327 -4.2467 14 7 3.7182 -4.2830 -3.8679 15 6 2.1142 -4.5875 -5.6643 16 6 1.5021 -5.9643 -5.6947 17 8 1.4529 -6.6285 -4.6811 18 7 1.0096 -6.4575 -6.8481 19 6 1.0565 -5.6624 -8.0828 20 6 1.7394 -6.4980 -9.1763 21 6 1.0099 -7.8359 -9.3181 22 6 1.0950 -8.6075 -7.9991 23 6 0.4104 -7.7982 -6.8936 24 6 1.7002 -3.4985 1.1562 25 6 0.3871 -2.7306 1.3278 26 1 -0.4850 0.8368 -0.0739 27 1 0.1462 -2.3095 -1.7497 28 1 0.1445 -3.9481 -1.0546 29 1 0.5748 -3.8999 -3.6175 30 1 4.4155 -4.4810 -4.5125 31 1 1.3955 -3.8620 -6.0453 32 1 3.0089 -4.5738 -6.2866 33 1 0.0428 -5.4085 -8.3927 34 1 1.6270 -4.7501 -7.9085 35 1 2.7794 -6.6777 -8.9040 36 1 1.6989 -5.9595 -10.1231 37 1 1.4750 -8.4208 -10.1116 38 1 -0.0359 -7.6548 -9.5660 39 1 2.1411 -8.7673 -7.7379 40 1 0.5954 -9.5701 -8.1080 41 1 0.5543 -8.2955 -5.9344 42 1 -0.6550 -7.7152 -7.1083 43 1 1.6351 -4.5586 0.9109 44 1 2.5367 -3.2139 1.7945 45 1 0.3604 -1.9411 2.0788 46 1 -0.5419 -3.2851 1.1952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853671921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:01 Heat of formation + Delta-G solvation = 19.846546 kcal Electronic energy + Delta-G solvation = -25612.925403 eV Core-core repulsion = 21926.929134 eV Total energy + Delta-G solvation = -3685.996269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54290 -38.02716 -37.33707 -36.33196 -34.65000 -33.34394 -31.87551 -31.67934 -30.07961 -29.24006 -26.04817 -25.54462 -24.84269 -23.62878 -21.59956 -21.03293 -20.36761 -19.39958 -18.97470 -17.61198 -17.33556 -16.32106 -16.06537 -15.71487 -15.21644 -14.98302 -14.68753 -14.52011 -14.49982 -14.16971 -14.08386 -13.74579 -13.52852 -13.47486 -12.79818 -12.73592 -12.42144 -12.00964 -11.75962 -11.57845 -11.49769 -11.42008 -11.16403 -11.01198 -10.92162 -10.76385 -10.43833 -10.16916 -10.04378 -9.59876 -9.53662 -8.98850 -8.77807 -8.72011 -8.39107 -8.10307 -7.39072 -5.99212 -4.03394 2.36351 2.46713 2.75234 3.16261 3.32864 3.40546 3.48186 4.19697 4.28615 4.39971 4.46450 4.50065 4.56917 4.67272 4.82746 4.85921 4.97679 5.07559 5.11635 5.19330 5.29854 5.30711 5.34992 5.41445 5.49409 5.55120 5.58324 5.66757 5.86321 6.09862 6.16619 6.27261 6.36973 6.45580 6.65269 6.84744 6.91460 7.02806 7.11699 7.45764 7.54466 7.73204 7.91231 7.95397 8.29638 8.49632 8.99354 9.09673 9.61533 11.09561 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.002730 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.636011 B =10255.209793 C =10785.191089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.480 4.480 8 H 0.064 0.936 9 C 0.048 3.952 10 C 0.077 3.923 11 O -0.112 6.112 12 N -0.588 5.588 13 C 0.448 3.552 14 N -0.748 5.748 15 C -0.144 4.144 16 C 0.517 3.483 17 O -0.517 6.517 18 N -0.616 5.616 19 C 0.103 3.897 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.135 4.135 23 C 0.110 3.890 24 C -0.204 4.204 25 C -0.144 4.144 26 H 0.259 0.741 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.403 0.597 30 H 0.334 0.666 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 -13.277 -22.187 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.046 3.954 10 C 0.000 4.000 11 O -0.115 6.115 12 N -0.273 5.273 13 C 0.163 3.837 14 N -0.381 5.381 15 C -0.189 4.189 16 C 0.304 3.696 17 O -0.391 6.391 18 N -0.351 5.351 19 C -0.020 4.020 20 C -0.175 4.175 21 C -0.158 4.158 22 C -0.174 4.174 23 C -0.012 4.012 24 C -0.242 4.242 25 C -0.182 4.182 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.242 0.758 30 H 0.150 0.850 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.283 -13.299 -20.436 24.416 hybrid contribution -0.381 0.711 -1.296 1.527 sum -1.664 -12.588 -21.732 25.170 Atomic orbital electron populations 1.69989 1.05835 1.26583 1.50040 1.24994 0.94871 0.98979 0.94611 0.86521 0.80485 0.83567 0.77408 1.19548 1.21106 1.21060 1.20491 0.92993 0.88210 1.50063 0.91787 1.18603 0.98926 0.93961 0.83897 1.22727 0.88711 0.95935 0.92658 1.90732 1.25601 1.85675 1.09453 1.45290 1.05536 1.70511 1.05978 1.20132 0.89082 0.90111 0.84339 1.69003 0.99578 1.30112 1.39394 1.21838 1.04328 0.95746 0.96997 1.20421 0.78113 0.88137 0.82972 1.90809 1.55670 1.60063 1.32592 1.48123 1.60761 1.17328 1.08907 1.21906 1.01567 0.94340 0.84162 1.22006 1.00182 0.96588 0.98698 1.21520 1.00875 0.96057 0.97362 1.21916 1.01782 0.98726 0.94927 1.21589 0.96539 0.82422 1.00667 1.23011 0.98615 0.95933 1.06590 1.22541 0.91987 1.01265 1.02394 0.93166 0.92043 0.95831 0.75782 0.85038 0.86985 0.86373 0.90908 0.89414 0.91307 0.90528 0.91630 0.91665 0.91466 0.90671 0.88819 0.91466 0.91399 0.90147 0.89473 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 12.83 55.43 0.71 -24.52 16 2 C 0.07 1.89 5.40 -17.82 -0.10 1.80 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.48 -13.76 8.77 -34.44 -0.30 -14.06 16 8 H 0.06 1.90 7.82 -52.49 -0.41 1.49 16 9 C 0.05 1.25 1.62 -155.65 -0.25 1.00 16 10 C 0.08 1.86 6.05 37.16 0.22 2.09 16 11 O -0.11 -2.73 11.04 -11.47 -0.13 -2.86 16 12 N -0.59 -11.27 6.48 32.83 0.21 -11.05 16 13 C 0.45 7.62 6.57 -154.56 -1.02 6.61 16 14 N -0.75 -14.45 13.63 32.89 0.45 -14.00 16 15 C -0.14 -1.53 4.46 -29.03 -0.13 -1.66 16 16 C 0.52 6.24 7.69 -10.99 -0.08 6.15 16 17 O -0.52 -8.74 15.45 5.56 0.09 -8.65 16 18 N -0.62 -5.34 2.97 -172.53 -0.51 -5.85 16 19 C 0.10 0.55 6.34 -3.48 -0.02 0.53 16 20 C -0.14 -0.62 6.10 -26.38 -0.16 -0.78 16 21 C -0.12 -0.57 5.88 -26.69 -0.16 -0.73 16 22 C -0.14 -0.83 6.08 -26.63 -0.16 -0.99 16 23 C 0.11 0.89 6.43 -3.73 -0.02 0.87 16 24 C -0.20 -4.84 9.96 -26.69 -0.27 -5.11 16 25 C -0.14 -3.49 9.34 -26.69 -0.25 -3.74 16 26 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 27 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.02 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.40 6.52 8.58 -40.82 -0.35 6.17 16 30 H 0.33 5.28 8.61 -40.82 -0.35 4.93 16 31 H 0.11 0.87 7.70 -51.93 -0.40 0.47 16 32 H 0.12 0.93 7.69 -51.93 -0.40 0.53 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.36 5.95 -51.93 -0.31 0.06 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.97 7.01 -51.93 -0.36 0.60 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 45 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 46 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -35.92 379.55 -8.81 -44.73 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.63 Total: 7.72 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.70 Total: -8.02 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.86 Total: -55.42 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.04 Total: -11.51 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.92 -8.81 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853671921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.577 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds