Wall clock time and date at job start Tue Mar 31 2020 09:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00013 * 2 1 4 4 H 1.48498 * 109.47339 * 270.00244 * 3 2 1 5 5 H 1.48500 * 109.47347 * 30.00430 * 3 2 1 6 6 H 1.48509 * 109.47264 * 150.00374 * 3 2 1 7 7 C 1.38815 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1 9 9 N 1.36947 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99958 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47054 * 205.00159 * 10 9 7 12 12 C 1.53004 * 109.47406 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47226 * 59.99175 * 12 11 10 14 14 N 1.46506 * 109.47100 * 60.00457 * 13 12 11 15 15 C 1.34773 * 119.99969 * 154.71955 * 14 13 12 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.39838 * 300.17618 * 17 15 14 19 19 C 1.53066 * 109.40258 * 180.43395 * 17 15 14 20 20 C 1.53330 * 108.43605 * 190.98278 * 19 17 15 21 21 C 1.52924 * 108.68660 * 67.50204 * 20 19 17 22 22 N 1.45748 * 110.48807 * 309.25760 * 21 20 19 23 23 C 1.33351 * 124.10734 * 19.09831 * 22 21 20 24 24 O 1.21289 * 118.24707 * 177.75064 * 23 22 21 25 25 C 1.52997 * 109.47602 * 300.00705 * 13 12 11 26 26 C 1.52993 * 109.47228 * 84.99549 * 10 9 7 27 27 H 0.96996 * 120.00060 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99922 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47005 * 324.99691 * 10 9 7 30 30 H 1.08995 * 109.47574 * 59.99409 * 11 10 9 31 31 H 1.09002 * 109.46832 * 299.99637 * 11 10 9 32 32 H 1.09002 * 109.46655 * 299.99533 * 12 11 10 33 33 H 1.08996 * 109.47149 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.47163 * 180.02562 * 13 12 11 35 35 H 0.97005 * 119.99811 * 335.00008 * 14 13 12 36 36 H 1.09001 * 109.67323 * 310.70394 * 19 17 15 37 37 H 1.08999 * 109.67769 * 71.23378 * 19 17 15 38 38 H 1.09002 * 109.58581 * 307.75231 * 20 19 17 39 39 H 1.08999 * 109.73683 * 187.35058 * 20 19 17 40 40 H 1.09004 * 109.29831 * 188.94382 * 21 20 19 41 41 H 1.09001 * 109.29697 * 69.57315 * 21 20 19 42 42 H 0.97002 * 117.94802 * 199.07164 * 22 21 20 43 43 H 1.08995 * 109.47574 * 180.02562 * 25 13 12 44 44 H 1.09002 * 109.46832 * 299.99981 * 25 13 12 45 45 H 1.08996 * 109.47599 * 299.99959 * 26 10 9 46 46 H 1.09002 * 109.47012 * 60.00146 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.1809 -4.7521 -0.6102 12 6 1.9456 -6.0774 -0.6096 13 6 2.3091 -6.4558 0.8275 14 7 1.0848 -6.5983 1.6195 15 6 1.0771 -7.3873 2.7121 16 8 2.0836 -7.9791 3.0399 17 6 -0.1824 -7.5343 3.5265 18 1 -0.4874 -6.5571 3.9012 19 6 0.0826 -8.4700 4.7085 20 6 -1.2607 -8.8237 5.3576 21 6 -2.0669 -9.6800 4.3801 22 7 -2.1199 -9.0448 3.0694 23 6 -1.2725 -8.0993 2.6618 24 8 -1.3886 -7.6725 1.5324 25 6 3.1863 -5.3605 1.4371 26 6 2.4220 -4.0356 1.4364 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.9687 -3.5506 -0.5900 30 1 0.9216 -4.4823 -1.6339 31 1 0.2702 -4.8584 -0.0207 32 1 2.8565 -5.9714 -1.1989 33 1 1.3205 -6.8577 -1.0436 34 1 2.8543 -7.3997 0.8278 35 1 0.2787 -6.1278 1.3552 36 1 0.5696 -9.3789 4.3549 37 1 0.7216 -7.9701 5.4363 38 1 -1.8102 -7.9094 5.5819 39 1 -1.0891 -9.3824 6.2777 40 1 -3.0804 -9.8045 4.7614 41 1 -1.5974 -10.6593 4.2872 42 1 -2.8149 -9.3279 2.4548 43 1 3.4456 -5.6304 2.4608 44 1 4.0971 -5.2546 0.8479 45 1 3.0470 -3.2553 1.8707 46 1 1.5113 -4.1418 2.0259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026509721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:37 Heat of formation + Delta-G solvation = -80.915174 kcal Electronic energy + Delta-G solvation = -26667.446860 eV Core-core repulsion = 22977.081234 eV Total energy + Delta-G solvation = -3690.365625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13090 -39.48057 -37.84844 -36.77722 -34.55315 -33.40772 -32.56582 -30.80609 -30.34356 -30.00638 -27.56114 -25.30655 -23.58667 -23.08789 -22.15295 -21.50047 -20.72866 -19.41912 -18.76327 -17.84824 -17.28363 -17.03651 -16.66323 -15.56935 -15.43596 -15.13434 -14.89271 -14.49203 -14.26500 -14.20088 -13.86446 -13.67355 -13.42774 -13.26884 -12.99514 -12.32975 -12.26605 -12.19661 -11.83037 -11.73349 -11.69439 -11.49179 -11.35725 -10.96493 -10.83965 -10.69768 -10.33986 -10.12528 -10.11544 -10.03847 -9.77423 -9.61690 -9.50540 -9.44038 -8.85897 -8.71326 -6.89536 -5.72021 -3.00015 2.21086 2.56381 3.02413 3.33394 3.45993 3.51238 3.52710 4.16987 4.29015 4.34761 4.40471 4.62549 4.83721 4.92274 4.96501 5.08317 5.19021 5.20508 5.25238 5.34802 5.43633 5.57151 5.63395 5.66365 5.77101 5.86321 5.87834 5.97583 6.02564 6.10322 6.19379 6.38320 6.40204 6.45451 6.60673 6.62060 6.76169 6.83699 6.90657 7.06243 7.20585 7.68650 7.74799 7.87020 8.32397 8.47037 9.57826 10.17238 10.51812 11.50811 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.003244 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.928927 B = 8628.393202 C = 9031.789803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.178 3.822 11 C -0.125 4.125 12 C -0.121 4.121 13 C 0.147 3.853 14 N -0.697 5.697 15 C 0.530 3.470 16 O -0.545 6.545 17 C -0.130 4.130 18 H 0.131 0.869 19 C -0.104 4.104 20 C -0.139 4.139 21 C 0.108 3.892 22 N -0.717 5.717 23 C 0.529 3.471 24 O -0.539 6.539 25 C -0.127 4.127 26 C -0.132 4.132 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.411 0.589 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.403 0.597 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 -22.069 9.669 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 C -0.163 4.163 12 C -0.159 4.159 13 C 0.043 3.957 14 N -0.349 5.349 15 C 0.314 3.686 16 O -0.423 6.423 17 C -0.154 4.154 18 H 0.149 0.851 19 C -0.142 4.142 20 C -0.177 4.177 21 C -0.017 4.017 22 N -0.369 5.369 23 C 0.315 3.685 24 O -0.416 6.416 25 C -0.167 4.167 26 C -0.172 4.172 27 H 0.064 0.936 28 H 0.216 0.784 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.249 0.751 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.238 0.762 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.670 -22.014 9.432 24.098 hybrid contribution -0.642 1.118 -0.130 1.295 sum -3.312 -20.897 9.302 23.112 Atomic orbital electron populations 1.69662 1.05069 1.25505 1.58041 1.24727 0.95496 0.97604 1.03300 0.86217 0.78654 0.84032 0.77471 1.21807 1.21868 1.20822 1.19253 0.90967 0.84194 1.42180 0.91259 1.42440 1.05746 0.99826 1.88562 1.20227 0.94294 0.85871 0.92810 1.21804 0.98760 0.94133 1.01611 1.21771 1.01298 0.98004 0.94869 1.20989 0.85347 0.98876 0.90532 1.46175 1.15045 1.47151 1.26576 1.19694 0.88512 0.79227 0.81211 1.90682 1.34438 1.47555 1.69672 1.21502 0.93735 1.03278 0.96870 0.85112 1.21496 0.97178 0.99941 0.95579 1.21934 0.96117 1.00991 0.98652 1.21444 1.01334 0.96279 0.82606 1.45355 1.33664 1.40119 1.17803 1.19605 0.82203 0.79287 0.87443 1.90797 1.72050 1.59059 1.19658 1.21917 0.98360 0.95677 1.00705 1.22199 0.99548 0.94808 1.00656 0.93619 0.78382 0.93593 0.91541 0.92425 0.90537 0.91727 0.90163 0.75087 0.89933 0.89689 0.90629 0.89167 0.90287 0.91410 0.76154 0.92345 0.91422 0.92181 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 22.68 29.55 -169.99 -5.02 17.65 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.58 9.93 -15.05 -0.15 -6.73 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.36 5.12 -53.43 -0.27 -18.63 16 10 C 0.18 3.56 2.77 -67.94 -0.19 3.37 16 11 C -0.12 -2.11 5.22 -26.73 -0.14 -2.25 16 12 C -0.12 -1.70 5.61 -26.73 -0.15 -1.85 16 13 C 0.15 2.15 2.79 -67.93 -0.19 1.96 16 14 N -0.70 -10.20 3.72 -53.81 -0.20 -10.40 16 15 C 0.53 7.57 7.02 -10.98 -0.08 7.49 16 16 O -0.55 -9.05 15.45 5.56 0.09 -8.96 16 17 C -0.13 -1.40 2.78 -93.14 -0.26 -1.66 16 18 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.10 -0.86 4.78 -26.53 -0.13 -0.99 16 20 C -0.14 -0.71 6.02 -26.60 -0.16 -0.87 16 21 C 0.11 0.51 7.17 -4.49 -0.03 0.48 16 22 N -0.72 -5.58 5.45 -61.39 -0.33 -5.91 16 23 C 0.53 5.99 7.28 -11.87 -0.09 5.90 16 24 O -0.54 -7.99 15.56 5.55 0.09 -7.91 16 25 C -0.13 -1.98 5.60 -26.76 -0.15 -2.13 16 26 C -0.13 -2.43 5.34 -26.76 -0.14 -2.57 16 27 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 29 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.99 6.50 -51.93 -0.34 0.66 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.19 7.57 -51.93 -0.39 0.79 16 35 H 0.41 6.20 5.52 -40.82 -0.23 5.98 16 36 H 0.08 0.78 7.72 -51.93 -0.40 0.38 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.40 2.74 8.80 -40.82 -0.36 2.38 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.05 1.00 7.60 -51.93 -0.39 0.61 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -34.11 360.46 -8.92 -43.03 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -7.47 Total: 13.86 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.95 Total: -0.39 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.08 Total: -62.72 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.17 Total: -16.87 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.11 -8.92 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026509721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.886 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds