Wall clock time and date at job start Tue Mar 31 2020 09:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00012 * 2 1 4 4 H 1.48500 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47167 * 299.99813 * 3 2 1 6 6 H 1.48498 * 109.47289 * 60.00179 * 3 2 1 7 7 C 1.38811 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00158 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00294 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46796 * 325.00500 * 10 9 7 12 12 C 1.53005 * 109.46654 * 84.99822 * 10 9 7 13 13 C 1.53000 * 109.46730 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47430 * 300.00239 * 13 12 10 15 15 H 1.09007 * 109.46641 * 300.00357 * 14 13 12 16 16 N 1.46499 * 109.47070 * 180.02562 * 14 13 12 17 17 C 1.34777 * 120.00199 * 85.00207 * 16 14 13 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 14 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 14 20 20 H 1.08997 * 109.67279 * 59.72243 * 19 17 16 21 21 C 1.53348 * 109.67244 * 180.22196 * 19 17 16 22 22 C 1.52895 * 108.68703 * 187.21649 * 21 19 17 23 23 N 1.45756 * 110.51998 * 309.32735 * 22 21 19 24 24 C 1.33346 * 124.10603 * 19.02032 * 23 22 21 25 25 O 1.21287 * 118.24194 * 177.77746 * 24 23 22 26 26 C 1.50177 * 123.51374 * 357.79446 * 24 23 22 27 27 C 1.52995 * 109.47023 * 59.99951 * 14 13 12 28 28 C 1.52998 * 109.47323 * 204.99703 * 10 9 7 29 29 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00009 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47187 * 299.99987 * 12 10 9 32 32 H 1.08999 * 109.47285 * 60.00456 * 12 10 9 33 33 H 1.09005 * 109.46716 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.47384 * 60.00347 * 13 12 10 35 35 H 0.97000 * 119.99484 * 264.99304 * 16 14 13 36 36 H 1.09001 * 109.59857 * 307.01631 * 21 19 17 37 37 H 1.08998 * 109.60028 * 67.50698 * 21 19 17 38 38 H 1.09001 * 109.30786 * 188.99089 * 22 21 19 39 39 H 1.08998 * 109.08537 * 69.52683 * 22 21 19 40 40 H 0.97005 * 117.94015 * 199.03859 * 23 22 21 41 41 H 1.08995 * 109.40201 * 257.45793 * 26 24 23 42 42 H 1.09002 * 109.40041 * 137.70856 * 26 24 23 43 43 H 1.08999 * 109.47294 * 60.00050 * 27 14 13 44 44 H 1.09000 * 109.47292 * 180.02562 * 27 14 13 45 45 H 1.09008 * 109.46553 * 60.00284 * 28 10 9 46 46 H 1.08998 * 109.47289 * 300.00570 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9688 -3.5505 -0.5889 12 6 2.4219 -4.0356 1.4376 13 6 3.1874 -5.3603 1.4376 14 6 2.3107 -6.4560 0.8278 15 1 1.3999 -6.5626 1.4171 16 7 3.0436 -7.7245 0.8283 17 6 3.0345 -8.5075 1.9252 18 8 2.4200 -8.1618 2.9120 19 6 3.7934 -9.8095 1.9279 20 1 4.8513 -9.6179 1.7482 21 6 3.6178 -10.5067 3.2824 22 6 4.5363 -11.7281 3.3274 23 7 4.3520 -12.5501 2.1380 24 6 3.7953 -12.1148 1.0072 25 8 3.7317 -12.8790 0.0675 26 6 3.2432 -10.7289 0.8347 27 6 1.9469 -6.0772 -0.6092 28 6 1.1808 -4.7522 -0.6090 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.0468 -3.2552 1.8719 32 1 1.5112 -4.1418 2.0271 33 1 3.4470 -5.6299 2.4614 34 1 4.0981 -5.2537 0.8483 35 1 3.5352 -8.0008 0.0391 36 1 3.8837 -9.8186 4.0849 37 1 2.5817 -10.8247 3.3983 38 1 4.3061 -12.3198 4.2135 39 1 5.5724 -11.3933 3.3770 40 1 4.6529 -13.4717 2.1712 41 1 2.1558 -10.7613 0.9023 42 1 3.5327 -10.3429 -0.1427 43 1 2.8576 -5.9705 -1.1985 44 1 1.3220 -6.8575 -1.0436 45 1 0.9216 -4.4823 -1.6328 46 1 0.2701 -4.8584 -0.0196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034621925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:16 Heat of formation + Delta-G solvation = -87.529918 kcal Electronic energy + Delta-G solvation = -25646.100113 eV Core-core repulsion = 21955.447651 eV Total energy + Delta-G solvation = -3690.652462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06347 -39.82045 -38.12318 -36.63619 -34.92275 -33.78082 -32.88040 -30.67724 -30.42452 -30.04997 -27.54850 -25.63995 -23.92729 -23.22486 -22.36992 -21.11471 -20.51708 -19.71961 -19.42309 -17.95878 -17.30008 -16.90907 -16.78090 -16.12265 -15.78699 -15.23764 -15.10308 -14.71586 -14.31143 -14.17033 -13.87760 -13.77515 -13.70096 -13.50342 -13.00308 -12.62632 -12.31799 -12.20486 -12.05155 -11.83652 -11.61449 -11.55495 -11.43590 -11.05989 -10.84102 -10.79138 -10.70878 -10.53354 -10.16323 -10.12434 -9.81949 -9.76593 -9.57496 -9.57294 -9.03763 -8.86014 -6.94222 -5.75789 -3.04245 2.19151 2.41032 2.80867 2.94095 3.43294 3.48830 3.51100 3.99000 4.12461 4.19849 4.26186 4.59178 4.69312 4.74029 4.79789 4.88676 5.00397 5.04031 5.18025 5.24188 5.28070 5.46259 5.51024 5.58533 5.65843 5.67961 5.71365 5.82727 5.85568 6.00278 6.22218 6.23298 6.27611 6.28247 6.45274 6.54936 6.62351 6.70915 6.83273 6.97837 7.14099 7.34852 7.71240 7.74733 8.04874 8.43112 9.54095 10.12781 10.47156 11.47058 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.036907 B = 0.002309 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.488239 B =12123.854418 C =12452.798541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.144 3.856 15 H 0.088 0.912 16 N -0.723 5.723 17 C 0.517 3.483 18 O -0.533 6.533 19 C -0.113 4.113 20 H 0.106 0.894 21 C -0.118 4.118 22 C 0.109 3.891 23 N -0.721 5.721 24 C 0.524 3.476 25 O -0.555 6.555 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.121 4.121 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.400 0.600 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 -25.011 4.577 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.041 3.959 15 H 0.106 0.894 16 N -0.373 5.373 17 C 0.303 3.697 18 O -0.409 6.409 19 C -0.134 4.134 20 H 0.124 0.876 21 C -0.157 4.157 22 C -0.016 4.016 23 N -0.373 5.373 24 C 0.311 3.689 25 O -0.434 6.434 26 C -0.167 4.167 27 C -0.158 4.158 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.324 -24.739 4.781 26.867 hybrid contribution 0.568 0.586 -0.180 0.836 sum 9.892 -24.154 4.600 26.503 Atomic orbital electron populations 1.69668 1.05092 1.25487 1.57915 1.24743 0.95513 0.97676 1.03190 0.86141 0.78769 0.84271 0.77169 1.20600 1.21921 1.21910 1.19280 0.90979 0.84147 1.42316 0.91192 1.42441 1.05804 0.99816 1.88545 1.20239 0.94283 0.85982 0.92763 0.93628 1.22227 0.99759 0.94488 1.00851 1.21889 0.98577 0.95403 1.00349 1.21143 0.95472 0.81750 0.97582 0.89400 1.46203 1.53127 1.21903 1.16089 1.20319 0.81175 0.85022 0.83227 1.90741 1.43290 1.73736 1.33137 1.21485 1.01619 0.93249 0.97082 0.87618 1.21733 1.01133 0.96084 0.96702 1.21466 0.99994 0.92694 0.87401 1.45505 1.62142 1.16097 1.13561 1.19996 0.77142 0.89819 0.81958 1.90793 1.57540 1.56366 1.38676 1.21659 1.03255 0.91365 1.00403 1.21761 1.00867 0.98326 0.94816 1.21764 0.98928 0.93452 1.01809 0.93595 0.78309 0.91819 0.92496 0.92417 0.92328 0.76833 0.88415 0.90086 0.89881 0.91230 0.76424 0.87465 0.87424 0.91540 0.91836 0.91344 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.94 5.12 -53.42 -0.27 -18.22 16 10 C 0.18 3.38 2.77 -67.93 -0.19 3.19 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.13 -2.34 5.50 -26.73 -0.15 -2.48 16 13 C -0.12 -1.72 5.49 -26.73 -0.15 -1.86 16 14 C 0.14 1.75 2.45 -67.93 -0.17 1.59 16 15 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 16 N -0.72 -6.65 4.99 -53.81 -0.27 -6.92 16 17 C 0.52 5.16 7.09 -10.98 -0.08 5.08 16 18 O -0.53 -7.55 15.56 5.55 0.09 -7.46 16 19 C -0.11 -0.72 2.60 -91.55 -0.24 -0.96 16 20 H 0.11 0.51 8.13 -51.93 -0.42 0.09 16 21 C -0.12 -0.69 4.71 -26.60 -0.13 -0.81 16 22 C 0.11 0.40 7.17 -4.50 -0.03 0.37 16 23 N -0.72 -4.13 5.45 -61.40 -0.33 -4.46 16 24 C 0.52 4.45 7.71 -11.87 -0.09 4.36 16 25 O -0.56 -7.12 17.78 5.55 0.10 -7.02 16 26 C -0.13 -0.83 5.20 -28.10 -0.15 -0.98 16 27 C -0.12 -1.39 5.39 -26.71 -0.14 -1.53 16 28 C -0.12 -1.87 5.39 -26.71 -0.14 -2.01 16 29 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 2.56 8.34 -40.82 -0.34 2.22 16 36 H 0.10 0.61 7.89 -51.93 -0.41 0.20 16 37 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.40 1.94 8.80 -40.82 -0.36 1.58 16 41 H 0.11 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.11 0.59 7.95 -51.93 -0.41 0.18 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -34.97 368.11 -9.03 -44.00 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.69 Total: 7.89 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.89 Total: -3.23 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.15 Total: -57.07 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.19 Total: -14.48 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.97 -9.03 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034621925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.528 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds