Wall clock time and date at job start Tue Mar 31 2020 10:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 126.77891 * 2 1 4 4 C 1.41373 * 103.98928 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.80394 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46741 * 124.99916 * 5 4 3 7 7 O 1.21277 * 120.00311 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99755 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00059 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46984 * 34.99747 * 9 8 6 11 11 C 1.53002 * 109.46680 * 274.99983 * 9 8 6 12 12 C 1.52996 * 109.47041 * 154.99948 * 9 8 6 13 13 C 1.52997 * 109.47131 * 294.99476 * 12 9 8 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 9 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.46953 * 179.97438 * 15 14 13 17 17 C 1.36942 * 120.00106 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99638 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00269 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00146 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00181 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47391 * 120.00172 * 21 19 17 24 24 H 1.48500 * 109.47521 * 240.00541 * 21 19 17 25 25 N 1.30175 * 106.39391 * 0.26267 * 4 3 2 26 26 O 1.20925 * 111.60404 * 359.53332 * 25 4 3 27 27 H 1.08998 * 109.46958 * 89.99581 * 1 2 3 28 28 H 1.08998 * 109.46690 * 210.00327 * 1 2 3 29 29 H 1.09004 * 109.46638 * 330.00042 * 1 2 3 30 30 H 1.08007 * 128.00343 * 359.97438 * 3 2 1 31 31 H 1.08993 * 109.46784 * 4.99837 * 5 4 3 32 32 H 1.09000 * 109.46667 * 244.99810 * 5 4 3 33 33 H 0.96999 * 120.00010 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47095 * 180.02562 * 11 9 8 35 35 H 1.09010 * 109.47120 * 299.99962 * 11 9 8 36 36 H 1.08992 * 109.47133 * 59.99601 * 11 9 8 37 37 H 1.09001 * 109.46993 * 174.99345 * 12 9 8 38 38 H 1.09004 * 109.47298 * 54.99759 * 12 9 8 39 39 H 1.09001 * 109.46832 * 60.00325 * 13 12 9 40 40 H 1.08993 * 109.47194 * 299.99846 * 13 12 9 41 41 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 42 42 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 43 43 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 44 44 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 45 45 H 0.96999 * 120.00356 * 0.02562 * 16 15 14 46 46 H 0.97000 * 120.00516 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0006 5 6 4.9211 1.3000 -0.0014 6 6 5.7674 0.8516 1.1621 7 8 5.3559 -0.0035 1.9173 8 7 6.9816 1.4008 1.3634 9 6 7.8046 0.9644 2.4942 10 1 7.6503 -0.1008 2.6661 11 6 7.4053 1.7464 3.7472 12 6 9.2798 1.2221 2.1807 13 6 9.7117 0.3452 1.0037 14 6 11.1872 0.6025 0.6906 15 6 11.6190 -0.2739 -0.4868 16 7 13.0315 -0.0272 -0.7869 17 6 13.6426 -0.7034 -1.8090 18 1 13.0830 -1.4183 -2.3941 19 6 14.9808 -0.4692 -2.0938 20 7 15.6625 0.4023 -1.3811 21 14 15.8142 -1.3911 -3.4884 22 1 14.8368 -2.3066 -4.1303 23 1 16.3160 -0.4199 -4.4936 24 1 16.9520 -2.1793 -2.9506 25 7 3.4764 -0.7564 -0.0066 26 8 2.3095 -1.0736 -0.0006 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 2.0345 2.1271 -0.0004 31 1 4.7163 2.3668 0.0881 32 1 5.4538 1.1092 -0.9331 33 1 7.3109 2.0844 0.7592 34 1 8.0178 1.4221 4.5884 35 1 7.5595 2.8117 3.5752 36 1 6.3544 1.5629 3.9704 37 1 9.8845 0.9807 3.0549 38 1 9.4183 2.2719 1.9218 39 1 9.1070 0.5868 0.1296 40 1 9.5733 -0.7044 1.2626 41 1 11.3260 1.6522 0.4319 42 1 11.7916 0.3607 1.5649 43 1 11.4799 -1.3237 -0.2285 44 1 11.0145 -0.0316 -1.3609 45 1 13.5341 0.6146 -0.2613 46 1 16.5978 0.5657 -1.5798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169865847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:23 Heat of formation + Delta-G solvation = 8.613579 kcal Electronic energy + Delta-G solvation = -24423.073033 eV Core-core repulsion = 20736.589665 eV Total energy + Delta-G solvation = -3686.483367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.15513 -40.05103 -37.07566 -35.30709 -34.84850 -33.68755 -33.26375 -31.76571 -30.43166 -29.18492 -28.11554 -27.44146 -24.27224 -23.43294 -22.55534 -21.63487 -20.78886 -20.62107 -20.00343 -18.00524 -17.50615 -17.07696 -16.97880 -16.43570 -15.54424 -15.17197 -14.81270 -14.69466 -14.20283 -14.01699 -13.82871 -13.65180 -13.62227 -13.33968 -13.13697 -13.12241 -12.93161 -12.72702 -12.55290 -12.30297 -11.76320 -11.46016 -11.33581 -11.25217 -10.98903 -10.81184 -10.69750 -10.48337 -10.39404 -10.29441 -9.96746 -9.93576 -9.65621 -9.57146 -9.22898 -8.84787 -6.88576 -5.74145 -3.02416 1.23988 1.92446 2.44542 2.84047 3.00387 3.44847 3.50420 3.52862 3.80663 4.11547 4.47219 4.60009 4.65387 4.68978 4.77079 4.82509 4.92084 4.94840 4.99198 5.04988 5.15609 5.26050 5.31511 5.41302 5.45531 5.50804 5.56263 5.62518 5.70031 5.73173 5.79865 5.90783 5.96014 6.11079 6.23703 6.32115 6.39255 6.40389 6.48503 6.91566 6.95441 7.29325 7.73159 8.03873 8.08513 8.45324 9.56109 10.15433 10.50059 11.49037 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.002042 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.926241 B =13706.302664 C =14945.391154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.230 4.230 4 C 0.027 3.973 5 C -0.064 4.064 6 C 0.516 3.484 7 O -0.527 6.527 8 N -0.722 5.722 9 C 0.141 3.859 10 H 0.088 0.912 11 C -0.162 4.162 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 N -0.335 5.335 26 O 0.105 5.895 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.017 0.983 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.327 7.095 6.650 32.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.252 4.252 4 C -0.133 4.133 5 C -0.105 4.105 6 C 0.300 3.700 7 O -0.402 6.402 8 N -0.375 5.375 9 C 0.037 3.963 10 H 0.106 0.894 11 C -0.221 4.221 12 C -0.164 4.164 13 C -0.152 4.152 14 C -0.163 4.163 15 C 0.024 3.976 16 N -0.379 5.379 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 N -0.035 5.035 26 O 0.035 5.965 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.188 0.812 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -30.725 5.312 7.058 31.970 hybrid contribution 0.636 0.954 -0.898 1.457 sum -30.089 6.266 6.160 31.346 Atomic orbital electron populations 1.20324 0.84103 1.04631 1.04037 1.24496 0.96434 0.86316 1.02906 1.22330 0.91096 1.00929 1.10824 1.22752 0.95938 0.90198 1.04382 1.20007 0.90597 1.00406 0.99456 1.20271 0.81847 0.81837 0.86007 1.90750 1.71556 1.31012 1.46922 1.46060 1.17532 1.42852 1.31031 1.21043 0.89915 1.00058 0.85281 0.89395 1.22168 1.02042 1.00322 0.97519 1.21936 0.93637 1.00853 0.99995 1.21520 0.96671 0.99688 0.97343 1.21726 0.94671 1.00534 0.99388 1.20650 0.86971 0.95982 0.93953 1.42396 1.05943 1.50240 1.39311 1.19313 0.93177 1.16863 1.07553 0.91166 1.24748 0.96741 0.99882 0.99855 1.69671 1.08917 1.37653 1.42131 0.86106 0.79404 0.78950 0.81700 1.20559 1.21878 1.21854 1.73916 0.96343 1.16151 1.17125 1.84873 1.11368 1.33192 1.67091 0.89424 0.89807 0.89158 0.81217 0.86635 0.86728 0.76444 0.91515 0.92476 0.92403 0.90211 0.91313 0.92145 0.92001 0.92132 0.92055 0.96560 0.96631 0.78361 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 36.01 0.38 0.12 16 2 C -0.04 -0.30 7.49 -35.30 -0.26 -0.57 16 3 C -0.23 -1.84 11.05 -39.38 -0.44 -2.28 16 4 C 0.03 0.29 6.10 -82.10 -0.50 -0.21 16 5 C -0.06 -0.52 6.30 -29.03 -0.18 -0.70 16 6 C 0.52 5.78 7.79 -10.98 -0.09 5.70 16 7 O -0.53 -8.33 15.27 5.56 0.08 -8.24 16 8 N -0.72 -6.55 4.53 -53.81 -0.24 -6.79 16 9 C 0.14 1.42 2.57 -67.93 -0.17 1.24 16 10 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 11 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 12 C -0.13 -1.25 4.75 -26.73 -0.13 -1.38 16 13 C -0.11 -1.44 5.10 -26.73 -0.14 -1.57 16 14 C -0.13 -2.02 5.33 -26.73 -0.14 -2.16 16 15 C 0.15 3.19 6.26 -4.05 -0.03 3.16 16 16 N -0.73 -19.41 5.60 -59.91 -0.34 -19.75 16 17 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 18 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 20 N -0.93 -28.88 13.06 55.49 0.72 -28.15 16 21 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 25 N -0.33 -4.54 11.48 33.42 0.38 -4.15 16 26 O 0.10 1.21 11.20 17.18 0.19 1.40 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.40 2.61 8.60 -40.82 -0.35 2.26 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.52 7.67 -40.82 -0.31 10.20 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -37.31 388.09 -7.73 -45.04 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.77 Total: 4.33 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.59 Total: -7.42 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.53 Total: -58.85 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.28 Total: -6.84 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.31 -7.73 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169865847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.652 kcal (2) G-P(sol) polarization free energy of solvation -37.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds