Wall clock time and date at job start Tue Mar 31 2020 10:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35451 * 126.77990 * 2 1 4 4 C 1.41376 * 103.98872 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.80278 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46817 * 125.00161 * 5 4 3 7 7 O 1.21279 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47135 * 325.00366 * 9 8 6 11 11 C 1.53000 * 109.47129 * 85.00009 * 9 8 6 12 12 C 1.52995 * 109.47630 * 205.00405 * 9 8 6 13 13 C 1.53000 * 109.47152 * 64.99994 * 12 9 8 14 14 C 1.53000 * 109.47214 * 180.02562 * 13 12 9 15 15 C 1.53000 * 109.47214 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47067 * 179.97438 * 15 14 13 17 17 C 1.36936 * 119.99988 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99998 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00312 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99750 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47300 * 60.00051 * 21 19 17 23 23 H 1.48503 * 109.46856 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46911 * 299.99734 * 21 19 17 25 25 N 1.30176 * 106.39261 * 0.26155 * 4 3 2 26 26 O 1.20926 * 111.60734 * 359.53568 * 25 4 3 27 27 H 1.09003 * 109.46890 * 89.99634 * 1 2 3 28 28 H 1.08999 * 109.47229 * 209.99652 * 1 2 3 29 29 H 1.09001 * 109.46819 * 330.00278 * 1 2 3 30 30 H 1.08003 * 128.00021 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46670 * 5.00384 * 5 4 3 32 32 H 1.09000 * 109.47247 * 245.00098 * 5 4 3 33 33 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 34 34 H 1.08992 * 109.47302 * 180.02562 * 11 9 8 35 35 H 1.09006 * 109.47229 * 300.00705 * 11 9 8 36 36 H 1.09002 * 109.46821 * 60.00164 * 11 9 8 37 37 H 1.08994 * 109.47690 * 185.00185 * 12 9 8 38 38 H 1.09003 * 109.47048 * 305.00005 * 12 9 8 39 39 H 1.09004 * 109.46980 * 300.00055 * 13 12 9 40 40 H 1.08995 * 109.47311 * 60.00363 * 13 12 9 41 41 H 1.09004 * 109.46768 * 299.99665 * 14 13 12 42 42 H 1.09003 * 109.47442 * 59.99732 * 14 13 12 43 43 H 1.08994 * 109.47015 * 299.99550 * 15 14 13 44 44 H 1.09003 * 109.47135 * 59.99545 * 15 14 13 45 45 H 0.97001 * 119.99987 * 0.02562 * 16 15 14 46 46 H 0.96997 * 119.99903 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.3000 -0.0003 6 6 5.7671 0.8504 1.1631 7 8 5.3549 -0.0046 1.9179 8 7 6.9816 1.3987 1.3647 9 6 7.8038 0.9623 2.4959 10 1 7.1603 0.7302 3.3446 11 6 8.5951 -0.2858 2.0997 12 6 8.7742 2.0801 2.8825 13 6 7.9848 3.2855 3.3972 14 6 8.9553 4.4036 3.7832 15 6 8.1659 5.6087 4.2985 16 7 9.0952 6.6790 4.6687 17 6 8.6146 7.8639 5.1588 18 1 7.5505 8.0092 5.2729 19 6 9.4951 8.8779 5.5101 20 7 10.7920 8.7007 5.3715 21 14 8.8395 10.4939 6.1794 22 1 8.0711 10.2389 7.4243 23 1 9.9749 11.4040 6.4757 24 1 7.9512 11.1239 5.1698 25 7 3.4763 -0.7564 -0.0066 26 8 2.3095 -1.0737 -0.0006 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 2.0345 2.1270 -0.0004 31 1 4.7163 2.3667 0.0901 32 1 5.4541 1.1099 -0.9319 33 1 7.3111 2.0829 0.7612 34 1 9.2065 -0.6108 2.9415 35 1 7.9037 -1.0822 1.8243 36 1 9.2386 -0.0537 1.2511 37 1 9.4452 1.7246 3.6644 38 1 9.3570 2.3734 2.0093 39 1 7.3139 3.6411 2.6152 40 1 7.4021 2.9922 4.2704 41 1 9.6265 4.0481 4.5651 42 1 9.5378 4.6968 2.9098 43 1 7.4945 5.9642 3.5170 44 1 7.5837 5.3152 5.1720 45 1 10.0509 6.5487 4.5658 46 1 11.4072 9.4091 5.6173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169865848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:26 Heat of formation + Delta-G solvation = 8.398696 kcal Electronic energy + Delta-G solvation = -24442.434398 eV Core-core repulsion = 20755.941713 eV Total energy + Delta-G solvation = -3686.492685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.14902 -40.04984 -37.07967 -35.31582 -34.84359 -33.67414 -33.27197 -31.76732 -30.43841 -29.17935 -28.09943 -27.44432 -24.27537 -23.42400 -22.55919 -21.63707 -20.79397 -20.62842 -19.99465 -18.00311 -17.51269 -17.08218 -16.97799 -16.42138 -15.58152 -15.17878 -14.75434 -14.66109 -14.13873 -14.08883 -13.92914 -13.63513 -13.56775 -13.33643 -13.12386 -13.10788 -12.93622 -12.73139 -12.50912 -12.31265 -11.76517 -11.45760 -11.35400 -11.26291 -10.99466 -10.79654 -10.70992 -10.47644 -10.43763 -10.30634 -10.01549 -9.93941 -9.66140 -9.55971 -9.22851 -8.85208 -6.90161 -5.75059 -3.03558 1.24297 1.92650 2.45015 2.84519 3.00515 3.44622 3.48525 3.49978 3.80468 4.13196 4.47314 4.59835 4.68012 4.68673 4.80242 4.84032 4.90936 4.97014 4.98646 5.04537 5.19059 5.26451 5.33850 5.41967 5.46270 5.52512 5.55264 5.61990 5.69922 5.74579 5.79318 5.91321 5.96626 6.11251 6.22564 6.30367 6.38302 6.39614 6.46472 6.89559 6.93571 7.29439 7.70397 8.03987 8.07351 8.44356 9.54870 10.14214 10.48801 11.47938 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.002117 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.483294 B =13225.924673 C =14766.115509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.037 4.037 3 C -0.229 4.229 4 C 0.028 3.972 5 C -0.064 4.064 6 C 0.516 3.484 7 O -0.527 6.527 8 N -0.722 5.722 9 C 0.142 3.858 10 H 0.088 0.912 11 C -0.163 4.163 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.126 4.126 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 N -0.338 5.338 26 O 0.103 5.897 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.172 0.828 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 -19.549 -15.089 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.250 4.250 4 C -0.131 4.131 5 C -0.105 4.105 6 C 0.300 3.700 7 O -0.402 6.402 8 N -0.375 5.375 9 C 0.038 3.962 10 H 0.106 0.894 11 C -0.221 4.221 12 C -0.165 4.165 13 C -0.152 4.152 14 C -0.164 4.164 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 N -0.040 5.040 26 O 0.033 5.967 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.189 0.811 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.122 -21.074 -14.473 29.703 hybrid contribution -0.082 2.138 0.081 2.141 sum -15.204 -18.936 -14.392 28.228 Atomic orbital electron populations 1.20331 0.84053 1.04727 1.04006 1.24492 0.96428 0.86242 1.02902 1.22375 0.91084 1.01067 1.10482 1.22750 0.95990 0.90168 1.04235 1.20011 0.90547 1.00729 0.99171 1.20271 0.81630 0.81940 0.86125 1.90752 1.71775 1.31066 1.46644 1.46059 1.17561 1.42723 1.31134 1.21035 0.92163 0.94006 0.89035 0.89434 1.22173 1.00208 0.97836 1.01918 1.21938 0.97745 0.94866 1.01906 1.21517 0.98197 0.94557 1.00901 1.21730 0.98318 0.95299 1.01011 1.20646 0.92796 0.87891 0.96181 1.42384 1.05221 1.12674 1.77612 1.19207 0.92122 0.91242 1.34480 0.91298 1.24758 0.95347 0.98648 1.02454 1.69655 1.00674 1.33574 1.54466 0.86246 0.77401 0.83574 0.78850 1.21268 1.21668 1.21286 1.73875 0.96448 1.16156 1.17476 1.84853 1.11368 1.33231 1.67234 0.89450 0.89819 0.89045 0.81084 0.86390 0.86980 0.76442 0.91527 0.92297 0.92484 0.90207 0.91304 0.92147 0.92032 0.92058 0.92112 0.96656 0.96602 0.78343 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.09 16 2 C -0.04 -0.31 7.49 -35.30 -0.26 -0.57 16 3 C -0.23 -1.94 11.05 -39.38 -0.44 -2.37 16 4 C 0.03 0.30 6.10 -82.10 -0.50 -0.20 16 5 C -0.06 -0.52 6.30 -29.03 -0.18 -0.70 16 6 C 0.52 5.79 7.79 -10.98 -0.09 5.70 16 7 O -0.53 -8.34 15.27 5.56 0.08 -8.26 16 8 N -0.72 -6.56 4.53 -53.81 -0.24 -6.80 16 9 C 0.14 1.43 2.57 -67.94 -0.17 1.25 16 10 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 11 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 12 C -0.13 -1.24 4.75 -26.73 -0.13 -1.37 16 13 C -0.11 -1.39 5.10 -26.73 -0.14 -1.52 16 14 C -0.13 -1.98 5.33 -26.73 -0.14 -2.13 16 15 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 16 N -0.73 -19.19 5.60 -59.91 -0.34 -19.52 16 17 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 21 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 N -0.34 -4.43 11.48 33.42 0.38 -4.05 16 26 O 0.10 1.16 11.20 17.17 0.19 1.36 16 27 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 2.61 8.60 -40.82 -0.35 2.26 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -36.80 388.09 -7.73 -44.53 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.77 Total: 4.71 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.59 Total: -7.49 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.53 Total: -58.33 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.28 Total: -6.90 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.80 -7.73 -44.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169865848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.926 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds