Wall clock time and date at job start Tue Mar 31 2020 10:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33694 * 126.27310 * 2 1 4 4 C 1.30623 * 108.99459 * 180.16592 * 3 2 1 5 5 C 1.50697 * 125.42033 * 179.83611 * 4 3 2 6 6 C 1.52997 * 109.47466 * 59.69687 * 5 4 3 7 7 C 1.53006 * 109.47239 * 299.69399 * 5 4 3 8 8 O 1.33662 * 109.15511 * 359.57236 * 4 3 2 9 9 C 1.35348 * 107.68341 * 0.26465 * 8 4 3 10 10 C 1.46723 * 126.64182 * 180.02562 * 9 8 4 11 11 O 1.21688 * 119.99510 * 179.97438 * 10 9 8 12 12 N 1.34770 * 119.99987 * 359.97286 * 10 9 8 13 13 C 1.46506 * 119.99940 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47089 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.47695 * 305.00064 * 14 13 12 16 16 C 1.52995 * 109.47118 * 65.00244 * 14 13 12 17 17 C 1.53005 * 109.47115 * 184.99937 * 14 13 12 18 18 N 1.46498 * 109.47392 * 175.00120 * 17 14 13 19 19 C 1.36931 * 120.00228 * 179.97438 * 18 17 14 20 20 H 1.08004 * 120.00306 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00081 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00075 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99955 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47548 * 59.99880 * 23 21 19 25 25 H 1.48508 * 109.47212 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47294 * 300.00040 * 23 21 19 27 27 H 1.08998 * 109.47114 * 270.30111 * 1 2 3 28 28 H 1.09004 * 109.47559 * 30.30487 * 1 2 3 29 29 H 1.09002 * 109.47019 * 150.29990 * 1 2 3 30 30 H 1.08998 * 109.46862 * 179.70242 * 5 4 3 31 31 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 32 32 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 33 33 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47050 * 300.00336 * 7 5 4 35 35 H 1.09001 * 109.47002 * 60.00070 * 7 5 4 36 36 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 37 37 H 0.97002 * 120.00222 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47257 * 300.00205 * 13 12 10 39 39 H 1.09004 * 109.46785 * 60.00044 * 13 12 10 40 40 H 1.09002 * 109.47323 * 179.97438 * 16 14 13 41 41 H 1.08997 * 109.47443 * 299.99705 * 16 14 13 42 42 H 1.09003 * 109.47201 * 59.99677 * 16 14 13 43 43 H 1.09001 * 109.47328 * 295.00136 * 17 14 13 44 44 H 1.09002 * 109.46616 * 55.00228 * 17 14 13 45 45 H 0.97002 * 119.99680 * 0.02562 * 18 17 14 46 46 H 0.96997 * 120.00009 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 -0.0036 5 6 4.7439 1.6031 -0.0083 6 6 4.7126 2.4924 1.2362 7 6 4.7126 2.4794 -1.2622 8 8 3.5890 -0.6460 0.0035 9 6 2.3136 -1.0992 0.0058 10 6 1.8827 -2.5017 0.0136 11 8 0.6966 -2.7736 0.0154 12 7 2.8004 -3.4886 0.0189 13 6 2.3701 -4.8890 0.0273 14 6 3.5991 -5.8001 0.0313 15 1 4.2413 -5.5479 -0.8125 16 6 4.3731 -5.6067 1.3368 17 6 3.1529 -7.2590 -0.0856 18 7 4.3308 -8.1222 -0.2019 19 6 4.1773 -9.4779 -0.3186 20 1 3.1879 -9.9108 -0.3253 21 6 5.2934 -10.2958 -0.4293 22 7 6.4992 -9.7682 -0.4216 23 14 5.0840 -12.1450 -0.5891 24 1 4.2933 -12.4502 -1.8085 25 1 6.4191 -12.7875 -0.6907 26 1 4.3733 -12.6679 0.6053 27 1 -0.3633 0.0054 1.0276 28 1 -0.3634 0.8872 -0.5186 29 1 -0.3633 -0.8927 -0.5092 30 1 5.6557 1.0058 -0.0053 31 1 4.7349 1.8682 2.1295 32 1 3.8008 3.0897 1.2331 33 1 5.5799 3.1527 1.2330 34 1 4.7350 1.8458 -2.1489 35 1 3.8008 3.0766 -1.2654 36 1 5.5798 3.1395 -1.2659 37 1 3.7459 -3.2717 0.0171 38 1 1.7727 -5.0802 0.9188 39 1 1.7717 -5.0905 -0.8612 40 1 5.2485 -6.2562 1.3399 41 1 4.6911 -4.5675 1.4202 42 1 3.7310 -5.8590 2.1807 43 1 2.5846 -7.5374 0.8019 44 1 2.5268 -7.3776 -0.9700 45 1 5.2195 -7.7335 -0.1955 46 1 7.2792 -10.3398 -0.4986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753632470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:33 Heat of formation + Delta-G solvation = -27.590661 kcal Electronic energy + Delta-G solvation = -25066.197495 eV Core-core repulsion = 21378.144194 eV Total energy + Delta-G solvation = -3688.053301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.74459 -39.73080 -36.96655 -36.31662 -35.49113 -34.39725 -32.57352 -31.28216 -30.10772 -28.28804 -27.69995 -26.50985 -25.45722 -24.36713 -22.70401 -21.82017 -20.98877 -20.67412 -20.02210 -18.30853 -17.24162 -17.04226 -16.55512 -16.21012 -15.44797 -14.98776 -14.86455 -14.63372 -14.31281 -14.11995 -13.70195 -13.60682 -13.47325 -13.33569 -13.07617 -12.70935 -12.66393 -12.59087 -12.36475 -12.20561 -12.08284 -11.82211 -11.60085 -11.22174 -11.09622 -11.05347 -10.93414 -10.74638 -10.61882 -10.49423 -10.28305 -10.03697 -9.69410 -9.34647 -8.95568 -8.88735 -6.94254 -5.78330 -3.06939 0.55443 2.06408 2.11074 2.90369 2.97984 3.43760 3.47960 3.48984 3.51320 4.27619 4.38159 4.48739 4.53940 4.57712 4.71565 4.96856 5.12410 5.14588 5.16013 5.17499 5.31376 5.32312 5.33717 5.42678 5.43680 5.56056 5.60084 5.64509 5.71271 5.75105 5.78621 5.89812 5.91133 6.03573 6.08406 6.18659 6.31764 6.37856 6.62000 6.73719 6.82975 7.15605 7.38840 7.68638 7.88433 8.40747 9.51941 10.08899 10.43654 11.44628 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.002302 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.922133 B =12161.616267 C =13068.056127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.081 3.919 3 N -0.483 5.483 4 C 0.225 3.775 5 C -0.001 4.001 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.188 6.188 9 C -0.119 4.119 10 C 0.607 3.393 11 O -0.516 6.516 12 N -0.711 5.711 13 C 0.126 3.874 14 C -0.111 4.111 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.161 3.839 18 N -0.731 5.731 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.405 0.595 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 27.044 1.647 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.213 5.213 4 C 0.019 3.981 5 C -0.020 4.020 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.074 6.074 9 C -0.174 4.174 10 C 0.392 3.608 11 O -0.394 6.394 12 N -0.361 5.361 13 C 0.002 3.998 14 C -0.130 4.130 15 H 0.096 0.904 16 C -0.200 4.200 17 C 0.033 3.967 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.240 0.760 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.708 27.219 1.641 27.860 hybrid contribution 1.037 -1.587 -0.082 1.898 sum -4.671 25.632 1.558 26.101 Atomic orbital electron populations 1.20390 0.85240 1.04391 1.03723 1.22078 0.98351 0.86369 0.97559 1.70280 1.00260 1.30962 1.19787 1.26585 0.95694 0.79140 0.96671 1.19795 0.90445 0.93171 0.98626 1.21854 1.03580 0.99347 0.95404 1.21854 1.03575 0.99460 0.95307 1.84457 1.29799 1.23756 1.69411 1.22960 0.81289 0.96371 1.16775 1.16294 0.85852 0.81265 0.77418 1.90862 1.15675 1.81859 1.51006 1.45988 1.09854 1.06712 1.73595 1.21544 0.97419 0.77924 1.02868 1.21566 0.95719 0.96423 0.99320 0.90426 1.21801 1.01269 1.00321 0.96584 1.20571 0.91174 0.86870 0.98105 1.42326 1.03159 1.03319 1.88731 1.19191 0.92721 0.82996 1.42172 0.91177 1.24740 0.95230 0.98090 1.02964 1.69644 0.96880 1.34312 1.57523 0.86247 0.76512 0.85367 0.77937 1.21249 1.21698 1.21250 0.90000 0.90512 0.88561 0.88003 0.92101 0.91055 0.90674 0.92076 0.91064 0.90673 0.75967 0.90782 0.90788 0.91011 0.93973 0.92714 0.95908 0.96045 0.78199 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.87 36.00 0.36 -0.46 16 2 C 0.08 0.99 7.16 -82.47 -0.59 0.40 16 3 N -0.48 -5.63 11.26 -7.07 -0.08 -5.71 16 4 C 0.22 2.30 6.82 -12.79 -0.09 2.22 16 5 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -0.78 9.17 37.16 0.34 -0.44 16 7 C -0.14 -0.79 9.18 37.16 0.34 -0.45 16 8 O -0.19 -2.17 10.57 4.42 0.05 -2.12 16 9 C -0.12 -1.52 7.18 -36.84 -0.26 -1.78 16 10 C 0.61 8.30 7.79 -12.84 -0.10 8.20 16 11 O -0.52 -8.11 14.79 5.20 0.08 -8.03 16 12 N -0.71 -8.87 5.28 -61.60 -0.33 -9.19 16 13 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 14 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 15 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 16 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 17 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 18 N -0.73 -18.21 5.33 -59.91 -0.32 -18.52 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 23 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.07 6.47 -51.93 -0.34 0.73 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.41 4.48 7.45 -40.82 -0.30 4.17 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.24 7.18 -51.93 -0.37 0.86 16 41 H 0.04 0.52 7.18 -51.93 -0.37 0.14 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -32.51 382.73 -7.18 -39.69 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.55 Total: 6.98 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.50 Total: 1.14 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.00 Total: -60.80 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.12 Total: -10.15 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.51 -7.18 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.101 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds