Wall clock time and date at job start Tue Mar 31 2020 10:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33696 * 126.27397 * 2 1 4 4 C 1.30619 * 108.99080 * 180.25382 * 3 2 1 5 5 C 1.50700 * 125.41817 * 179.74048 * 4 3 2 6 6 C 1.52994 * 109.47630 * 300.02384 * 5 4 3 7 7 C 1.52996 * 109.47029 * 60.02664 * 5 4 3 8 8 O 1.33663 * 109.15575 * 359.76835 * 4 3 2 9 9 C 1.35343 * 107.68734 * 359.97438 * 8 4 3 10 10 C 1.46718 * 126.64444 * 179.97438 * 9 8 4 11 11 O 1.21689 * 119.99536 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00416 * 0.03319 * 10 9 8 13 13 C 1.46490 * 120.00384 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47559 * 179.97438 * 13 12 10 15 15 H 1.09008 * 109.46613 * 54.99525 * 14 13 12 16 16 C 1.53001 * 109.47108 * 295.00069 * 14 13 12 17 17 C 1.52996 * 109.47530 * 174.99686 * 14 13 12 18 18 N 1.46498 * 109.47059 * 184.99929 * 17 14 13 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31611 * 120.00081 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47483 * 90.00178 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47495 * 329.99664 * 23 21 19 27 27 H 1.08999 * 109.47172 * 270.14666 * 1 2 3 28 28 H 1.09003 * 109.46538 * 30.13871 * 1 2 3 29 29 H 1.08989 * 109.47427 * 150.13934 * 1 2 3 30 30 H 1.09000 * 109.46823 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.46890 * 59.99613 * 6 5 4 32 32 H 1.08998 * 109.47637 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47534 * 300.00647 * 6 5 4 34 34 H 1.09006 * 109.47305 * 179.97438 * 7 5 4 35 35 H 1.08992 * 109.47328 * 300.00046 * 7 5 4 36 36 H 1.09003 * 109.47244 * 60.00148 * 7 5 4 37 37 H 0.97002 * 119.99300 * 359.97438 * 12 10 9 38 38 H 1.08998 * 109.47374 * 59.99359 * 13 12 10 39 39 H 1.09002 * 109.47263 * 299.99603 * 13 12 10 40 40 H 1.09001 * 109.47309 * 179.97438 * 16 14 13 41 41 H 1.08995 * 109.46988 * 299.99895 * 16 14 13 42 42 H 1.09001 * 109.46786 * 59.99727 * 16 14 13 43 43 H 1.09004 * 109.47066 * 65.00196 * 17 14 13 44 44 H 1.08994 * 109.46974 * 305.00344 * 17 14 13 45 45 H 0.97001 * 120.00384 * 0.02562 * 18 17 14 46 46 H 0.97008 * 120.00329 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0779 0.0000 4 6 3.5453 0.6898 -0.0055 5 6 4.7440 1.6030 -0.0129 6 6 4.7063 2.4841 -1.2631 7 6 4.7191 2.4874 1.2353 8 8 3.5889 -0.6461 -0.0040 9 6 2.3136 -1.0992 0.0032 10 6 1.8826 -2.5017 0.0067 11 8 0.6965 -2.7736 0.0128 12 7 2.8003 -3.4888 0.0033 13 6 2.3699 -4.8890 0.0073 14 6 3.5989 -5.8004 0.0015 15 1 4.2465 -5.5422 0.8395 16 6 4.3644 -5.6160 -1.3103 17 6 3.1534 -7.2583 0.1315 18 7 4.3320 -8.1207 0.2460 19 6 4.1791 -9.4750 0.3793 20 1 3.1897 -9.9077 0.3955 21 6 5.2958 -10.2917 0.4936 22 7 5.1488 -11.5933 0.6212 23 14 7.0070 -9.5431 0.4663 24 1 7.4212 -9.2038 1.8514 25 1 7.9652 -10.5194 -0.1117 26 1 6.9953 -8.3111 -0.3627 27 1 -0.3633 0.0026 1.0276 28 1 -0.3632 0.8888 -0.5160 29 1 -0.3634 -0.8911 -0.5116 30 1 5.6558 1.0056 -0.0168 31 1 3.7945 3.0814 -1.2592 32 1 5.5731 3.1449 -1.2683 33 1 4.7240 1.8540 -2.1524 34 1 5.5865 3.1477 1.2301 35 1 3.8075 3.0847 1.2392 36 1 4.7461 1.8597 2.1260 37 1 3.7457 -3.2719 -0.0019 38 1 1.7673 -5.0865 -0.8793 39 1 1.7766 -5.0842 0.9006 40 1 5.2401 -6.2650 -1.3143 41 1 3.7167 -5.8741 -2.1482 42 1 4.6818 -4.5774 -1.4028 43 1 2.5793 -7.5428 -0.7503 44 1 2.5331 -7.3707 1.0207 45 1 5.2207 -7.7321 0.2318 46 1 5.9292 -12.1641 0.7007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753632471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:35 Heat of formation + Delta-G solvation = -48.155274 kcal Electronic energy + Delta-G solvation = -25154.317205 eV Core-core repulsion = 21465.372155 eV Total energy + Delta-G solvation = -3688.945049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.61347 -40.82887 -38.42769 -36.95394 -36.44142 -35.94062 -34.22942 -32.56224 -31.99799 -29.27116 -28.12008 -27.87964 -27.10681 -25.27346 -24.03344 -22.85576 -21.95625 -21.50452 -21.38986 -19.86297 -19.04001 -18.13291 -17.46942 -17.24521 -16.61280 -16.53219 -15.87948 -15.74170 -15.52705 -15.37045 -15.07469 -14.87810 -14.37378 -14.21868 -14.17079 -14.07966 -13.86380 -13.68296 -13.35538 -13.22932 -13.09724 -12.88855 -12.73661 -12.33614 -12.21856 -12.20478 -12.16717 -12.04875 -11.99872 -11.83221 -11.77973 -11.72336 -11.31230 -10.99032 -10.41013 -9.88478 -9.30648 -8.03053 -5.37178 -0.36535 1.19297 1.23891 1.36854 1.41735 1.48992 1.88137 1.97390 2.48297 2.74350 3.28189 3.50162 3.52493 3.55816 3.89497 3.90687 3.95856 4.01705 4.04887 4.13094 4.34916 4.41329 4.47797 4.64128 4.65033 4.71134 4.74586 4.78065 4.78458 4.88925 4.89228 4.91239 4.97186 5.05231 5.07566 5.13109 5.22119 5.28008 5.29718 5.37312 5.40687 5.75277 6.17488 6.20497 6.48080 6.85705 7.07421 7.82476 8.02633 9.18506 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002538 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.440684 B =11029.925619 C =12138.796921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.076 3.924 3 N -0.501 5.501 4 C 0.234 3.766 5 C -0.003 4.003 6 C -0.141 4.141 7 C -0.141 4.141 8 O -0.190 6.190 9 C -0.141 4.141 10 C 0.609 3.391 11 O -0.541 6.541 12 N -0.702 5.702 13 C 0.135 3.865 14 C -0.099 4.099 15 H 0.087 0.913 16 C -0.142 4.142 17 C 0.160 3.840 18 N -0.755 5.755 19 C -0.236 4.236 20 H 0.054 0.946 21 C -0.067 4.067 22 N -0.985 5.985 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.297 1.297 26 H -0.247 1.247 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.368 0.632 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 34.572 -2.508 34.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 N -0.231 5.231 4 C 0.028 3.972 5 C -0.022 4.022 6 C -0.198 4.198 7 C -0.199 4.199 8 O -0.077 6.077 9 C -0.195 4.195 10 C 0.395 3.605 11 O -0.421 6.421 12 N -0.353 5.353 13 C 0.012 3.988 14 C -0.118 4.118 15 H 0.105 0.895 16 C -0.200 4.200 17 C 0.033 3.967 18 N -0.401 5.401 19 C -0.367 4.367 20 H 0.073 0.927 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.171 1.171 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.139 0.861 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.202 0.798 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.962 34.745 -2.497 34.848 hybrid contribution 1.388 -1.215 0.108 1.848 sum 0.426 33.530 -2.389 33.618 Atomic orbital electron populations 1.20413 0.84340 1.04537 1.04242 1.22451 0.99235 0.86559 0.96578 1.70330 1.00931 1.30864 1.20941 1.27543 0.96486 0.79006 0.94144 1.20143 0.89510 0.93024 0.99547 1.21855 1.04224 0.99306 0.94456 1.21856 1.04217 0.99290 0.94507 1.84444 1.29170 1.24366 1.69751 1.22733 0.81947 0.95978 1.18869 1.16348 0.85551 0.81729 0.76890 1.90855 1.16725 1.82372 1.52165 1.45797 1.10212 1.05930 1.73374 1.21306 0.96344 0.78174 1.02990 1.21407 0.96692 0.93619 1.00110 0.89505 1.21810 1.00160 1.01863 0.96140 1.20699 0.89031 0.88475 0.98492 1.42640 1.04399 1.03006 1.90053 1.19035 0.93628 0.83306 1.40774 0.92747 1.25572 1.02200 0.95593 1.02471 1.69894 1.30310 1.04394 1.58943 0.85372 0.79503 0.78272 0.78406 1.20343 1.22344 1.17086 0.89271 0.89098 0.89561 0.86056 0.92199 0.88132 0.92615 0.88122 0.92192 0.92683 0.74896 0.90734 0.90968 0.93260 0.92482 0.90841 0.95417 0.95479 0.79830 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.87 71.24 0.70 -0.80 16 2 C 0.08 1.74 7.16 41.83 0.30 2.04 16 3 N -0.50 -10.72 11.26 -291.05 -3.28 -14.00 16 4 C 0.23 4.17 6.82 88.29 0.60 4.78 16 5 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 16 6 C -0.14 -1.06 9.17 71.98 0.66 -0.40 16 7 C -0.14 -1.09 9.17 71.98 0.66 -0.43 16 8 O -0.19 -3.85 10.57 -7.07 -0.07 -3.93 16 9 C -0.14 -3.29 7.18 24.05 0.17 -3.12 16 10 C 0.61 15.32 7.79 86.46 0.67 15.99 16 11 O -0.54 -16.26 14.80 -4.31 -0.06 -16.33 16 12 N -0.70 -15.07 5.28 -467.06 -2.47 -17.54 16 13 C 0.14 3.21 5.06 86.38 0.44 3.65 16 14 C -0.10 -2.58 2.46 -10.79 -0.03 -2.61 16 15 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 16 C -0.14 -3.45 8.94 71.98 0.64 -2.81 16 17 C 0.16 5.79 5.65 86.38 0.49 6.27 16 18 N -0.75 -34.35 5.13 -343.46 -1.76 -36.11 16 19 C -0.24 -13.50 10.47 84.03 0.88 -12.62 16 20 H 0.05 3.43 8.06 -2.91 -0.02 3.40 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 22 N -0.98 -63.38 13.97 21.65 0.30 -63.08 16 23 Si 0.96 44.67 27.74 68.60 1.90 46.57 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.25 -10.11 6.52 99.48 0.65 -9.47 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.84 6.47 -2.39 -0.02 1.83 16 30 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.41 7.27 7.45 -92.71 -0.69 6.58 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.37 7.18 -2.39 -0.02 1.35 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.36 7.18 -2.39 -0.02 1.34 16 43 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.37 15.66 4.71 -92.71 -0.44 15.22 16 46 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -73.56 379.62 0.98 -72.58 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.20 Total: 25.44 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.62 Total: 6.40 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -7.20 Total: -130.73 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.14 Total: -20.26 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Total: -73.56 0.98 -72.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.424 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds