Wall clock time and date at job start Tue Mar 31 2020 10:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 110.43213 * 2 1 4 4 O 1.21284 * 119.99534 * 120.70320 * 3 2 1 5 5 N 1.34767 * 120.00088 * 300.70011 * 3 2 1 6 6 C 1.46503 * 120.00099 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47105 * 175.12718 * 6 5 3 8 8 N 1.46503 * 110.01769 * 303.89881 * 7 6 5 9 9 C 1.36937 * 120.00196 * 301.53048 * 8 7 6 10 10 H 1.08007 * 119.99911 * 354.60937 * 9 8 7 11 11 C 1.38812 * 120.00165 * 174.61035 * 9 8 7 12 12 N 1.31618 * 119.99997 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00052 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47119 * 89.99750 * 13 11 9 15 15 H 1.48499 * 109.47440 * 210.00093 * 13 11 9 16 16 H 1.48506 * 109.47056 * 330.00100 * 13 11 9 17 17 C 1.54267 * 110.02986 * 182.51175 * 7 6 5 18 18 C 1.54969 * 104.15985 * 217.13695 * 17 7 6 19 19 C 1.54885 * 102.77567 * 37.88401 * 18 17 7 20 20 C 1.53871 * 110.03141 * 65.29255 * 7 6 5 21 21 C 1.54625 * 110.48492 * 122.54353 * 2 1 3 22 22 C 1.54827 * 101.60562 * 143.57251 * 21 2 1 23 23 N 1.46766 * 105.49024 * 334.56112 * 22 21 2 24 24 C 1.34417 * 111.30152 * 17.04290 * 23 22 21 25 25 O 1.21280 * 124.94293 * 179.55614 * 24 23 22 26 26 H 1.08993 * 109.47013 * 59.29740 * 1 2 3 27 27 H 1.09000 * 109.47348 * 179.30216 * 1 2 3 28 28 H 1.09005 * 109.46940 * 299.30110 * 1 2 3 29 29 H 0.97002 * 120.00409 * 0.02562 * 5 3 2 30 30 H 1.08994 * 109.47051 * 295.12598 * 6 5 3 31 31 H 1.09001 * 109.47084 * 55.12773 * 6 5 3 32 32 H 0.96994 * 120.00162 * 121.52441 * 8 7 6 33 33 H 0.96993 * 119.99932 * 180.02562 * 12 11 9 34 34 H 1.09002 * 110.48499 * 335.78332 * 17 7 6 35 35 H 1.09000 * 110.48779 * 98.42612 * 17 7 6 36 36 H 1.09003 * 110.71848 * 279.57354 * 18 17 7 37 37 H 1.08990 * 110.92433 * 156.29554 * 18 17 7 38 38 H 1.09000 * 110.49000 * 203.40808 * 19 18 17 39 39 H 1.09002 * 110.59890 * 80.81692 * 19 18 17 40 40 H 1.08998 * 110.03141 * 238.56687 * 20 7 6 41 41 H 1.08995 * 110.03694 * 359.97438 * 20 7 6 42 42 H 1.09010 * 110.96933 * 261.72237 * 21 2 1 43 43 H 1.08996 * 110.97652 * 25.48807 * 21 2 1 44 44 H 1.09001 * 110.22171 * 215.57008 * 22 21 2 45 45 H 1.08995 * 110.33527 * 93.61479 * 22 21 2 46 46 H 0.97002 * 124.35079 * 197.01881 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7704 1.7932 0.9032 5 7 1.7330 2.2517 -1.0035 6 6 2.2449 3.6244 -1.0038 7 6 1.8339 4.3217 -2.3022 8 7 2.3052 3.5516 -3.4560 9 6 3.6415 3.2934 -3.6072 10 1 4.3564 3.7298 -2.9253 11 6 4.0773 2.4708 -4.6369 12 7 3.2062 1.9394 -5.4682 13 14 5.9002 2.1191 -4.8436 14 1 6.2635 0.9118 -4.0590 15 1 6.1996 1.8851 -6.2792 16 1 6.6868 3.2809 -4.3569 17 6 2.4197 5.7482 -2.3442 18 6 1.3096 6.5942 -3.0177 19 6 0.0117 5.9849 -2.4318 20 6 0.3036 4.4718 -2.3583 21 6 2.0712 -0.7792 1.2210 22 6 3.3233 -1.4656 0.6225 23 7 3.0582 -1.5786 -0.8165 24 6 2.0595 -0.7623 -1.1946 25 8 1.6437 -0.6524 -2.3286 26 1 -0.3633 0.5247 -0.8836 27 1 -0.3634 -1.0276 -0.0125 28 1 -0.3633 0.5030 0.8962 29 1 1.1615 1.9471 -1.7257 30 1 1.8313 4.1666 -0.1536 31 1 3.3322 3.6067 -0.9294 32 1 1.6708 3.2245 -4.1127 33 1 3.5106 1.3643 -6.1875 34 1 2.6154 6.1101 -1.3348 35 1 3.3313 5.7689 -2.9413 36 1 1.3376 6.4751 -4.1008 37 1 1.4009 7.6451 -2.7437 38 1 -0.8330 6.1787 -3.0929 39 1 -0.1843 6.3843 -1.4367 40 1 -0.0884 3.9725 -3.2443 41 1 -0.1464 4.0476 -1.4607 42 1 2.3450 -0.0990 2.0277 43 1 1.3472 -1.5179 1.5646 44 1 3.4561 -2.4549 1.0604 45 1 4.2093 -0.8549 0.7960 46 1 3.5418 -2.1665 -1.4177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:08 Heat of formation + Delta-G solvation = -68.038552 kcal Electronic energy + Delta-G solvation = -27780.432944 eV Core-core repulsion = 24090.625690 eV Total energy + Delta-G solvation = -3689.807253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93148 -38.89647 -37.89078 -36.07036 -34.06434 -33.34656 -32.89668 -30.54139 -28.74998 -28.22092 -27.67500 -25.49396 -24.49434 -23.22501 -22.04370 -21.30542 -20.20289 -19.11682 -18.39323 -17.32540 -17.05463 -16.86419 -15.73241 -15.35776 -15.08958 -14.96207 -14.49931 -14.24528 -13.99230 -13.71536 -13.49126 -13.40134 -13.25733 -12.78923 -12.60327 -12.52581 -12.35947 -12.13669 -11.83645 -11.41334 -11.35385 -11.11571 -11.03721 -10.74224 -10.69383 -10.59680 -10.47538 -10.19740 -10.10548 -9.80719 -9.69967 -9.57334 -9.34183 -8.94357 -8.83169 -8.41347 -6.91303 -5.70440 -2.99290 2.60958 3.06945 3.45124 3.49616 3.51073 3.51653 3.71664 4.30896 4.45302 4.62577 4.74800 5.04362 5.07406 5.15077 5.22411 5.27789 5.32326 5.48624 5.61861 5.64525 5.67266 5.74526 5.81440 5.85139 5.97594 5.97911 6.00136 6.08069 6.12216 6.20266 6.28349 6.35210 6.46363 6.59379 6.64894 6.80862 6.85518 6.90028 7.03036 7.12251 7.15758 7.77328 8.05511 8.43856 8.46973 8.65268 9.58725 10.13409 10.48316 11.51217 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.006708 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.237851 B = 4172.948079 C = 5779.091085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.531 3.469 4 O -0.550 6.550 5 N -0.687 5.687 6 C 0.118 3.882 7 C 0.189 3.811 8 N -0.708 5.708 9 C -0.236 4.236 10 H 0.067 0.933 11 C -0.004 4.004 12 N -0.922 5.922 13 Si 0.898 3.102 14 H -0.293 1.293 15 H -0.293 1.293 16 H -0.283 1.283 17 C -0.131 4.131 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.115 4.115 22 C 0.101 3.899 23 N -0.732 5.732 24 C 0.528 3.472 25 O -0.494 6.494 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.408 0.592 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.385 0.615 33 H 0.253 0.747 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 -2.478 13.062 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C 0.314 3.686 4 O -0.429 6.429 5 N -0.335 5.335 6 C -0.008 4.008 7 C 0.096 3.904 8 N -0.349 5.349 9 C -0.368 4.368 10 H 0.085 0.915 11 C -0.201 4.201 12 N -0.569 5.569 13 Si 0.730 3.270 14 H -0.221 1.221 15 H -0.219 1.219 16 H -0.209 1.209 17 C -0.171 4.171 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.164 4.164 21 C -0.153 4.153 22 C -0.023 4.023 23 N -0.389 5.389 24 C 0.311 3.689 25 O -0.367 6.367 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.244 0.756 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.220 0.780 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.273 -2.079 13.107 14.679 hybrid contribution 1.048 -0.901 -0.983 1.696 sum -5.225 -2.979 12.125 13.534 Atomic orbital electron populations 1.21652 0.90117 1.03270 1.03394 1.21605 0.99206 0.94809 0.97039 1.19546 0.80735 0.85688 0.82629 1.90633 1.38097 1.77164 1.37052 1.45725 1.50666 1.12765 1.24385 1.21945 0.99629 0.81034 0.98155 1.20455 0.91309 0.91028 0.87603 1.42515 1.05835 1.62960 1.23638 1.19002 0.83837 1.23325 1.10594 0.91508 1.24669 0.96947 0.99830 0.98650 1.69640 1.32127 1.36254 1.18855 0.86335 0.85909 0.78011 0.76772 1.22064 1.21895 1.20864 1.22833 0.99303 0.95616 0.99354 1.22388 0.94712 0.97767 1.00549 1.22293 0.97778 0.95614 1.00066 1.22432 0.96043 0.96293 1.01654 1.22714 0.96558 0.99114 0.96939 1.22118 0.98792 1.01121 0.80288 1.46086 1.37504 1.44626 1.10690 1.20263 0.80099 0.79699 0.88871 1.90878 1.60499 1.64697 1.20596 0.90940 0.91318 0.91119 0.75550 0.93015 0.91507 0.78041 0.93660 0.93011 0.90279 0.91415 0.92771 0.92390 0.92327 0.91233 0.92146 0.87490 0.89565 0.90310 0.90750 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.31 37.16 0.31 -1.22 16 2 C -0.12 -1.77 0.74 -155.67 -0.12 -1.88 16 3 C 0.53 9.60 6.55 -10.99 -0.07 9.53 16 4 O -0.55 -10.95 15.46 5.55 0.09 -10.87 16 5 N -0.69 -12.92 4.96 -60.29 -0.30 -13.22 16 6 C 0.12 2.25 3.99 -4.04 -0.02 2.24 16 7 C 0.19 3.55 0.68 -130.70 -0.09 3.46 16 8 N -0.71 -16.72 4.76 -46.19 -0.22 -16.94 16 9 C -0.24 -6.37 8.39 -15.06 -0.13 -6.50 16 10 H 0.07 1.81 7.22 -52.48 -0.38 1.43 16 11 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 12 N -0.92 -27.83 13.06 55.49 0.72 -27.11 16 13 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 14 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 15 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 C -0.13 -2.30 5.95 -25.03 -0.15 -2.45 16 18 C -0.12 -1.78 6.91 -24.70 -0.17 -1.96 16 19 C -0.12 -1.66 6.83 -25.07 -0.17 -1.83 16 20 C -0.13 -2.01 5.80 -25.61 -0.15 -2.16 16 21 C -0.12 -1.30 6.06 -24.91 -0.15 -1.45 16 22 C 0.10 1.14 7.79 -2.93 -0.02 1.12 16 23 N -0.73 -10.51 6.24 -59.02 -0.37 -10.88 16 24 C 0.53 9.29 7.13 -10.86 -0.08 9.21 16 25 O -0.49 -10.90 17.83 5.56 0.10 -10.80 16 26 H 0.07 0.95 7.59 -51.93 -0.39 0.56 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.41 7.98 7.39 -40.82 -0.30 7.67 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.46 7.48 -51.93 -0.39 1.07 16 32 H 0.38 9.89 7.28 -40.82 -0.30 9.59 16 33 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 35 H 0.08 1.60 7.12 -51.93 -0.37 1.23 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.18 7.44 -51.93 -0.39 0.79 16 41 H 0.06 0.88 7.54 -51.93 -0.39 0.49 16 42 H 0.11 1.26 6.94 -51.92 -0.36 0.90 16 43 H 0.09 0.73 7.91 -51.93 -0.41 0.32 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.41 5.42 8.96 -40.82 -0.37 5.06 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -33.33 366.14 -7.97 -41.31 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -7.39 Total: 19.11 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.10 Total: 5.89 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -0.16 Total: -68.15 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.18 Total: -21.67 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.33 -7.97 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.731 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds