Wall clock time and date at job start Tue Mar 31 2020 10:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 110.43213 * 2 1 4 4 O 1.21284 * 119.99534 * 120.70320 * 3 2 1 5 5 N 1.34767 * 120.00088 * 300.70011 * 3 2 1 6 6 C 1.46503 * 120.00099 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47105 * 175.12718 * 6 5 3 8 8 N 1.46503 * 110.01769 * 303.89881 * 7 6 5 9 9 C 1.36937 * 120.00196 * 301.53048 * 8 7 6 10 10 H 1.08007 * 119.99911 * 354.60937 * 9 8 7 11 11 C 1.38812 * 120.00165 * 174.61035 * 9 8 7 12 12 N 1.31618 * 119.99997 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00052 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47119 * 89.99750 * 13 11 9 15 15 H 1.48499 * 109.47440 * 210.00093 * 13 11 9 16 16 H 1.48506 * 109.47056 * 330.00100 * 13 11 9 17 17 C 1.54267 * 110.02986 * 182.51175 * 7 6 5 18 18 C 1.54969 * 104.15985 * 217.13695 * 17 7 6 19 19 C 1.54885 * 102.77567 * 37.88401 * 18 17 7 20 20 C 1.53871 * 110.03141 * 65.29255 * 7 6 5 21 21 C 1.54625 * 110.48492 * 122.54353 * 2 1 3 22 22 C 1.54827 * 101.60562 * 143.57251 * 21 2 1 23 23 N 1.46766 * 105.49024 * 334.56112 * 22 21 2 24 24 C 1.34417 * 111.30152 * 17.04290 * 23 22 21 25 25 O 1.21280 * 124.94293 * 179.55614 * 24 23 22 26 26 H 1.08993 * 109.47013 * 59.29740 * 1 2 3 27 27 H 1.09000 * 109.47348 * 179.30216 * 1 2 3 28 28 H 1.09005 * 109.46940 * 299.30110 * 1 2 3 29 29 H 0.97002 * 120.00409 * 0.02562 * 5 3 2 30 30 H 1.08994 * 109.47051 * 295.12598 * 6 5 3 31 31 H 1.09001 * 109.47084 * 55.12773 * 6 5 3 32 32 H 0.96994 * 120.00162 * 121.52441 * 8 7 6 33 33 H 0.96993 * 119.99932 * 180.02562 * 12 11 9 34 34 H 1.09002 * 110.48499 * 335.78332 * 17 7 6 35 35 H 1.09000 * 110.48779 * 98.42612 * 17 7 6 36 36 H 1.09003 * 110.71848 * 279.57354 * 18 17 7 37 37 H 1.08990 * 110.92433 * 156.29554 * 18 17 7 38 38 H 1.09000 * 110.49000 * 203.40808 * 19 18 17 39 39 H 1.09002 * 110.59890 * 80.81692 * 19 18 17 40 40 H 1.08998 * 110.03141 * 238.56687 * 20 7 6 41 41 H 1.08995 * 110.03694 * 359.97438 * 20 7 6 42 42 H 1.09010 * 110.96933 * 261.72237 * 21 2 1 43 43 H 1.08996 * 110.97652 * 25.48807 * 21 2 1 44 44 H 1.09001 * 110.22171 * 215.57008 * 22 21 2 45 45 H 1.08995 * 110.33527 * 93.61479 * 22 21 2 46 46 H 0.97002 * 124.35079 * 197.01881 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7704 1.7932 0.9032 5 7 1.7330 2.2517 -1.0035 6 6 2.2449 3.6244 -1.0038 7 6 1.8339 4.3217 -2.3022 8 7 2.3052 3.5516 -3.4560 9 6 3.6415 3.2934 -3.6072 10 1 4.3564 3.7298 -2.9253 11 6 4.0773 2.4708 -4.6369 12 7 3.2062 1.9394 -5.4682 13 14 5.9002 2.1191 -4.8436 14 1 6.2635 0.9118 -4.0590 15 1 6.1996 1.8851 -6.2792 16 1 6.6868 3.2809 -4.3569 17 6 2.4197 5.7482 -2.3442 18 6 1.3096 6.5942 -3.0177 19 6 0.0117 5.9849 -2.4318 20 6 0.3036 4.4718 -2.3583 21 6 2.0712 -0.7792 1.2210 22 6 3.3233 -1.4656 0.6225 23 7 3.0582 -1.5786 -0.8165 24 6 2.0595 -0.7623 -1.1946 25 8 1.6437 -0.6524 -2.3286 26 1 -0.3633 0.5247 -0.8836 27 1 -0.3634 -1.0276 -0.0125 28 1 -0.3633 0.5030 0.8962 29 1 1.1615 1.9471 -1.7257 30 1 1.8313 4.1666 -0.1536 31 1 3.3322 3.6067 -0.9294 32 1 1.6708 3.2245 -4.1127 33 1 3.5106 1.3643 -6.1875 34 1 2.6154 6.1101 -1.3348 35 1 3.3313 5.7689 -2.9413 36 1 1.3376 6.4751 -4.1008 37 1 1.4009 7.6451 -2.7437 38 1 -0.8330 6.1787 -3.0929 39 1 -0.1843 6.3843 -1.4367 40 1 -0.0884 3.9725 -3.2443 41 1 -0.1464 4.0476 -1.4607 42 1 2.3450 -0.0990 2.0277 43 1 1.3472 -1.5179 1.5646 44 1 3.4561 -2.4549 1.0604 45 1 4.2093 -0.8549 0.7960 46 1 3.5418 -2.1665 -1.4177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753668509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:08 Heat of formation + Delta-G solvation = -93.898083 kcal Electronic energy + Delta-G solvation = -27781.554297 eV Core-core repulsion = 24090.625690 eV Total energy + Delta-G solvation = -3690.928606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20515 -40.35420 -39.35199 -37.38163 -35.57181 -35.16108 -34.12985 -32.37579 -29.92965 -29.55534 -29.19958 -26.69441 -26.09143 -24.95813 -23.19762 -22.58249 -21.51612 -20.52758 -19.89273 -18.94001 -18.58275 -18.28777 -17.29765 -16.79053 -16.44879 -16.30783 -16.08539 -15.61647 -15.53400 -15.21025 -14.93738 -14.76241 -14.64595 -14.16820 -14.06297 -13.69531 -13.43685 -13.31791 -13.23409 -13.17281 -12.98458 -12.50793 -12.38358 -12.28030 -12.17216 -12.11494 -11.88296 -11.73429 -11.59739 -11.39194 -11.32784 -11.10338 -10.90185 -10.72157 -10.12324 -9.95427 -8.94541 -7.90955 -5.16308 1.22208 1.37015 1.37975 1.45541 1.68467 2.29544 2.40355 2.53496 3.22485 3.38095 3.40455 3.67080 3.76054 3.84458 3.90580 3.99717 4.10157 4.15049 4.39139 4.43634 4.56962 4.65195 4.65972 4.71087 4.73089 4.75929 4.84892 4.96020 5.00274 5.03659 5.09599 5.13428 5.15308 5.18797 5.26974 5.39225 5.46623 5.56199 5.59254 5.66364 5.76588 5.94774 6.30982 6.55669 7.14062 7.19580 7.37828 8.14184 8.36337 9.31274 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.006708 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.237851 B = 4172.948079 C = 5779.091085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.117 4.117 3 C 0.524 3.476 4 O -0.571 6.571 5 N -0.692 5.692 6 C 0.125 3.875 7 C 0.180 3.820 8 N -0.713 5.713 9 C -0.215 4.215 10 H 0.063 0.937 11 C -0.066 4.066 12 N -0.955 5.955 13 Si 0.949 3.051 14 H -0.300 1.300 15 H -0.295 1.295 16 H -0.272 1.272 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.106 4.106 22 C 0.096 3.904 23 N -0.727 5.727 24 C 0.514 3.486 25 O -0.553 6.553 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.404 0.596 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.372 0.628 33 H 0.245 0.755 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.061 0.939 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 -2.223 15.802 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.124 4.124 3 C 0.309 3.691 4 O -0.451 6.451 5 N -0.340 5.340 6 C -0.001 4.001 7 C 0.090 3.910 8 N -0.353 5.353 9 C -0.347 4.347 10 H 0.081 0.919 11 C -0.259 4.259 12 N -0.606 5.606 13 Si 0.780 3.220 14 H -0.228 1.228 15 H -0.222 1.222 16 H -0.197 1.197 17 C -0.169 4.169 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.159 4.159 21 C -0.144 4.144 22 C -0.027 4.027 23 N -0.382 5.382 24 C 0.298 3.702 25 O -0.430 6.430 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.240 0.760 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.205 0.795 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.080 0.920 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.273 -1.801 15.929 17.603 hybrid contribution 1.402 -0.938 -1.726 2.413 sum -5.871 -2.739 14.203 15.611 Atomic orbital electron populations 1.21704 0.88002 1.04736 1.03694 1.21686 1.00946 0.92358 0.97373 1.20160 0.80159 0.86909 0.81870 1.90614 1.38849 1.77962 1.37694 1.45824 1.50702 1.12936 1.24547 1.21846 0.97603 0.81762 0.98911 1.20792 0.93671 0.90891 0.85659 1.42614 1.04393 1.63390 1.24932 1.19185 0.85357 1.21148 1.09029 0.91937 1.25280 1.00057 1.01135 0.99466 1.69780 1.33329 1.37790 1.19700 0.85502 0.82573 0.77689 0.76245 1.22841 1.22189 1.19685 1.22773 0.98692 0.95197 1.00283 1.22359 0.94538 0.99015 0.99094 1.22281 0.97302 0.93339 1.01786 1.22386 0.93364 0.98310 1.01844 1.22832 0.97098 0.99360 0.95094 1.22405 0.98378 1.03531 0.78400 1.46253 1.36165 1.43415 1.12350 1.20852 0.80458 0.80015 0.88848 1.90843 1.62520 1.66667 1.22938 0.92695 0.89261 0.88775 0.76026 0.90629 0.94939 0.79478 0.94644 0.90847 0.93577 0.93557 0.90088 0.90841 0.89736 0.92653 0.90422 0.87637 0.85663 0.85800 0.92036 0.74606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 8.31 71.98 0.60 -2.14 16 2 C -0.12 -3.29 0.74 -52.93 -0.04 -3.33 16 3 C 0.52 18.69 6.55 87.66 0.57 19.26 16 4 O -0.57 -22.29 15.46 -3.04 -0.05 -22.34 16 5 N -0.69 -26.15 4.96 -463.06 -2.30 -28.45 16 6 C 0.12 4.71 3.99 86.38 0.34 5.06 16 7 C 0.18 6.77 0.68 4.33 0.00 6.77 16 8 N -0.71 -34.71 4.76 -300.06 -1.43 -36.14 16 9 C -0.21 -11.93 8.39 84.03 0.70 -11.22 16 10 H 0.06 3.48 7.22 -2.91 -0.02 3.46 16 11 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 12 N -0.96 -60.03 13.06 21.65 0.28 -59.75 16 13 Si 0.95 48.72 29.55 68.60 2.03 50.75 16 14 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 15 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 16 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 17 C -0.13 -4.45 5.95 31.70 0.19 -4.26 16 18 C -0.11 -3.22 6.91 31.91 0.22 -3.00 16 19 C -0.11 -2.70 6.83 31.67 0.22 -2.48 16 20 C -0.12 -3.68 5.80 31.32 0.18 -3.50 16 21 C -0.11 -2.07 6.06 31.77 0.19 -1.88 16 22 C 0.10 1.92 7.79 86.95 0.68 2.60 16 23 N -0.73 -20.25 6.24 -459.22 -2.87 -23.12 16 24 C 0.51 18.10 7.13 87.90 0.63 18.73 16 25 O -0.55 -25.29 17.83 -3.03 -0.05 -25.34 16 26 H 0.05 1.41 7.59 -2.39 -0.02 1.40 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.40 16.17 7.39 -92.71 -0.69 15.48 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.03 1.44 7.48 -2.39 -0.02 1.42 16 32 H 0.37 19.92 7.28 -92.71 -0.67 19.25 16 33 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.07 2.20 7.85 -2.39 -0.02 2.18 16 35 H 0.05 1.88 7.12 -2.39 -0.02 1.86 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.86 7.44 -2.39 -0.02 1.84 16 41 H 0.08 2.09 7.54 -2.39 -0.02 2.08 16 42 H 0.11 2.17 6.94 -2.38 -0.02 2.16 16 43 H 0.13 1.50 7.91 -2.39 -0.02 1.48 16 44 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.41 10.78 8.96 -92.71 -0.83 9.95 16 Total: -1.00 -76.38 366.14 -0.60 -76.99 By element: Atomic # 1 Polarization: 51.44 SS G_CDS: -1.18 Total: 50.26 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 4.96 Total: 17.13 kcal Atomic # 7 Polarization: -141.14 SS G_CDS: -6.31 Total: -147.45 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -0.10 Total: -47.68 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.75 kcal Total: -76.38 -0.60 -76.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.910 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds