Wall clock time and date at job start Tue Mar 31 2020 10:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.43384 * 2 1 4 4 O 1.21280 * 120.00333 * 241.08563 * 3 2 1 5 5 N 1.34776 * 119.99774 * 61.09108 * 3 2 1 6 6 C 1.46501 * 119.99951 * 179.71766 * 5 3 2 7 7 C 1.53000 * 109.47250 * 175.39238 * 6 5 3 8 8 N 1.46498 * 110.01707 * 303.90944 * 7 6 5 9 9 C 1.36937 * 119.99873 * 301.50585 * 8 7 6 10 10 H 1.07996 * 120.00566 * 354.23856 * 9 8 7 11 11 C 1.38824 * 120.00129 * 174.23760 * 9 8 7 12 12 N 1.31616 * 120.00257 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99584 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47488 * 90.00063 * 13 11 9 15 15 H 1.48498 * 109.46966 * 209.99690 * 13 11 9 16 16 H 1.48499 * 109.47299 * 329.99859 * 13 11 9 17 17 C 1.54262 * 110.03196 * 182.51299 * 7 6 5 18 18 C 1.54966 * 104.15871 * 217.13588 * 17 7 6 19 19 C 1.54891 * 102.77556 * 37.89313 * 18 17 7 20 20 C 1.53875 * 110.02896 * 65.29725 * 7 6 5 21 21 C 1.54634 * 110.59790 * 237.38619 * 2 1 3 22 22 C 1.54482 * 101.76280 * 216.46773 * 21 2 1 23 23 N 1.46758 * 105.47385 * 25.41306 * 22 21 2 24 24 C 1.34423 * 111.30282 * 342.98666 * 23 22 21 25 25 O 1.21281 * 124.93852 * 180.37000 * 24 23 22 26 26 H 1.09001 * 109.47288 * 60.69470 * 1 2 3 27 27 H 1.08998 * 109.47050 * 180.69575 * 1 2 3 28 28 H 1.08998 * 109.46775 * 300.69817 * 1 2 3 29 29 H 0.97001 * 119.99894 * 359.97438 * 5 3 2 30 30 H 1.08996 * 109.47713 * 295.40103 * 6 5 3 31 31 H 1.09004 * 109.46563 * 55.39839 * 6 5 3 32 32 H 0.97007 * 120.00136 * 121.50868 * 8 7 6 33 33 H 0.96996 * 119.99737 * 179.97438 * 12 11 9 34 34 H 1.08996 * 110.49151 * 335.78888 * 17 7 6 35 35 H 1.09004 * 110.48564 * 98.43156 * 17 7 6 36 36 H 1.08993 * 110.72315 * 279.57442 * 18 17 7 37 37 H 1.08997 * 110.76093 * 156.22125 * 18 17 7 38 38 H 1.09005 * 110.48586 * 203.40436 * 19 18 17 39 39 H 1.08999 * 110.60243 * 80.81378 * 19 18 17 40 40 H 1.08998 * 110.03209 * 238.57069 * 20 7 6 41 41 H 1.08997 * 110.03162 * 359.95123 * 20 7 6 42 42 H 1.08998 * 110.96714 * 334.58685 * 21 2 1 43 43 H 1.08998 * 110.96748 * 98.34914 * 21 2 1 44 44 H 1.09002 * 110.24508 * 266.41136 * 22 21 2 45 45 H 1.08998 * 110.24341 * 144.41863 * 22 21 2 46 46 H 0.97007 * 124.34983 * 163.00118 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7437 1.8032 -0.9194 5 7 1.7626 2.2406 1.0218 6 6 2.2792 3.6115 1.0248 7 6 1.7100 4.3684 2.2266 8 7 0.2460 4.3251 2.1989 9 6 -0.4335 4.8242 1.1198 10 1 0.1025 5.3329 0.3323 11 6 -1.8114 4.6762 1.0380 12 7 -2.4644 5.1554 0.0006 13 14 -2.7386 3.7968 2.4005 14 1 -3.1549 4.7813 3.4314 15 1 -3.9413 3.1353 1.8337 16 1 -1.8570 2.7747 3.0196 17 6 2.1960 5.8323 2.2075 18 6 2.4291 6.1738 3.7010 19 6 3.0163 4.8566 4.2659 20 6 2.2310 3.7482 3.5349 21 6 2.0740 -0.7802 -1.2192 22 6 3.3233 -1.4656 -0.6227 23 7 3.0583 -1.5786 0.8164 24 6 2.0594 -0.7623 1.1945 25 8 1.6430 -0.6534 2.3284 26 1 -0.3634 0.5030 -0.8961 27 1 -0.3633 -1.0276 0.0125 28 1 -0.3633 0.5246 0.8837 29 1 1.2124 1.9280 1.7569 30 1 3.3669 3.5899 1.0910 31 1 1.9811 4.1141 0.1046 32 1 -0.2422 3.9429 2.9450 33 1 -3.4271 5.0517 -0.0566 34 1 3.1267 5.9181 1.6469 35 1 1.4317 6.4824 1.7816 36 1 1.4875 6.4189 4.1921 37 1 3.1436 6.9905 3.8036 38 1 2.8507 4.7955 5.3416 39 1 4.0801 4.7829 4.0399 40 1 1.3945 3.4158 4.1496 41 1 2.8886 2.9075 3.3136 42 1 1.3507 -1.5192 -1.5638 43 1 2.3496 -0.1007 -2.0257 44 1 4.2084 -0.8536 -0.7963 45 1 3.4560 -2.4548 -1.0606 46 1 3.5419 -2.1666 1.4175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:11 Heat of formation + Delta-G solvation = -66.491839 kcal Electronic energy + Delta-G solvation = -27679.666225 eV Core-core repulsion = 23989.926042 eV Total energy + Delta-G solvation = -3689.740183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12923 -39.06206 -38.04708 -36.36661 -34.15536 -33.43362 -33.00560 -30.93004 -28.99175 -28.31175 -28.06351 -25.56536 -24.55172 -22.98393 -22.14239 -21.48021 -20.28888 -19.24863 -18.48108 -17.56221 -17.51549 -17.26471 -15.75633 -15.44791 -15.32069 -14.95131 -14.56092 -14.43438 -14.24682 -13.85179 -13.73190 -13.53632 -13.00022 -12.95513 -12.70290 -12.60671 -12.31684 -12.12548 -12.02454 -11.79239 -11.47121 -11.23493 -11.14161 -10.81959 -10.77425 -10.64132 -10.42913 -10.34500 -10.19816 -9.97083 -9.92527 -9.53768 -9.47060 -9.25837 -8.90621 -8.48066 -7.29410 -5.77027 -3.13609 2.36529 2.86931 3.20950 3.36216 3.40109 3.45371 3.65428 4.17575 4.33275 4.58160 4.67358 4.92748 4.98992 5.03986 5.09833 5.15286 5.25159 5.36747 5.43442 5.55308 5.69016 5.72254 5.76742 5.83259 5.87717 5.88995 5.99640 6.04078 6.11556 6.20623 6.26281 6.27079 6.37052 6.49435 6.51619 6.58939 6.71465 6.76451 6.79749 6.93687 7.04688 7.95538 7.99959 8.09396 8.41516 8.58261 9.19130 9.91435 10.10627 11.40849 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.005901 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.246041 B = 4744.017952 C = 5807.909528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.118 4.118 3 C 0.532 3.468 4 O -0.544 6.544 5 N -0.691 5.691 6 C 0.120 3.880 7 C 0.194 3.806 8 N -0.736 5.736 9 C -0.237 4.237 10 H 0.091 0.909 11 C 0.009 3.991 12 N -0.931 5.931 13 Si 0.876 3.124 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.275 1.275 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.129 4.129 21 C -0.118 4.118 22 C 0.101 3.899 23 N -0.730 5.730 24 C 0.532 3.468 25 O -0.518 6.518 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.405 0.595 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.361 0.639 33 H 0.258 0.742 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.413 -11.741 2.206 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.125 4.125 3 C 0.316 3.684 4 O -0.423 6.423 5 N -0.339 5.339 6 C -0.006 4.006 7 C 0.103 3.897 8 N -0.379 5.379 9 C -0.367 4.367 10 H 0.109 0.891 11 C -0.186 4.186 12 N -0.578 5.578 13 Si 0.706 3.294 14 H -0.213 1.213 15 H -0.219 1.219 16 H -0.201 1.201 17 C -0.170 4.170 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.167 4.167 21 C -0.156 4.156 22 C -0.024 4.024 23 N -0.386 5.386 24 C 0.316 3.684 25 O -0.393 6.393 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.241 0.759 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.195 0.805 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 12.527 -11.207 1.868 16.912 hybrid contribution -0.938 -1.064 1.446 2.026 sum 11.589 -12.271 3.314 17.200 Atomic orbital electron populations 1.21679 0.89313 1.02994 1.04692 1.21624 0.99833 0.94622 0.96399 1.19501 0.80527 0.85814 0.82595 1.90647 1.39389 1.76704 1.35543 1.45710 1.52079 1.12845 1.23294 1.21918 0.96020 0.81249 1.01372 1.20422 0.84902 0.93078 0.91317 1.42918 0.99801 1.73683 1.21510 1.18931 0.90067 1.29181 0.98510 0.89092 1.24631 0.96333 1.00642 0.97037 1.69695 1.07693 1.50897 1.29534 0.86694 0.80064 0.80038 0.82592 1.21258 1.21901 1.20103 1.22804 1.00634 0.97837 0.95676 1.22414 1.00206 0.96234 0.96684 1.22306 0.99041 0.95438 0.99023 1.22464 0.99727 0.97975 0.96528 1.22699 0.96376 0.99303 0.97182 1.22128 0.99029 1.01430 0.79766 1.46153 1.37218 1.44150 1.11091 1.20437 0.79449 0.79473 0.88996 1.90766 1.61054 1.66131 1.21343 0.90318 0.91512 0.90651 0.75918 0.92932 0.90642 0.80514 0.93147 0.92618 0.89729 0.91483 0.92486 0.92340 0.92127 0.91600 0.91833 0.89326 0.87093 0.90551 0.90027 0.75101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.33 37.16 0.31 -1.57 16 2 C -0.12 -1.70 0.74 -155.67 -0.12 -1.81 16 3 C 0.53 9.45 6.55 -10.98 -0.07 9.38 16 4 O -0.54 -10.72 15.45 5.56 0.09 -10.63 16 5 N -0.69 -12.69 4.95 -60.29 -0.30 -12.99 16 6 C 0.12 2.24 3.99 -4.04 -0.02 2.22 16 7 C 0.19 3.53 0.68 -130.70 -0.09 3.44 16 8 N -0.74 -16.08 4.55 -46.20 -0.21 -16.29 16 9 C -0.24 -6.23 8.87 -15.06 -0.13 -6.36 16 10 H 0.09 2.62 7.45 -52.49 -0.39 2.23 16 11 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 12 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 13 Si 0.88 21.52 27.68 -169.99 -4.71 16.82 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.28 -6.36 6.61 56.52 0.37 -5.99 16 17 C -0.13 -2.21 5.95 -25.03 -0.15 -2.36 16 18 C -0.12 -1.73 6.91 -24.70 -0.17 -1.90 16 19 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 20 C -0.13 -2.02 5.80 -25.61 -0.15 -2.16 16 21 C -0.12 -1.27 6.05 -25.09 -0.15 -1.42 16 22 C 0.10 0.89 7.78 -3.12 -0.02 0.86 16 23 N -0.73 -7.68 6.24 -59.21 -0.37 -8.05 16 24 C 0.53 7.66 7.08 -10.86 -0.08 7.59 16 25 O -0.52 -9.07 17.69 5.56 0.10 -8.97 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.26 7.70 -51.93 -0.40 0.86 16 29 H 0.41 7.61 7.33 -40.82 -0.30 7.31 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.62 7.49 -51.93 -0.39 1.23 16 32 H 0.36 7.96 5.20 -40.82 -0.21 7.75 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 34 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 35 H 0.08 1.68 7.11 -51.93 -0.37 1.31 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.06 7.44 -51.93 -0.39 0.68 16 41 H 0.06 0.97 7.54 -51.93 -0.39 0.57 16 42 H 0.09 0.76 7.92 -51.93 -0.41 0.35 16 43 H 0.11 1.32 6.91 -51.93 -0.36 0.96 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.41 3.43 8.96 -40.82 -0.37 3.06 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -32.53 362.94 -7.61 -40.14 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -7.35 Total: 17.89 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.10 Total: 4.27 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.10 Total: -64.98 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.18 Total: -19.60 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.53 -7.61 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.347 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds