Wall clock time and date at job start Tue Mar 31 2020 09:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47193 * 239.99827 * 3 2 1 5 5 H 1.48494 * 109.47420 * 119.99737 * 3 2 1 6 6 H 1.48500 * 109.47062 * 359.97438 * 3 2 1 7 7 C 1.38814 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99360 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99612 * 173.57310 * 9 7 2 11 11 C 1.53002 * 110.43520 * 62.77605 * 10 9 7 12 12 N 1.46498 * 109.47212 * 57.40479 * 11 10 9 13 13 C 1.34771 * 120.00063 * 175.18270 * 12 11 10 14 14 O 1.21279 * 120.00286 * 0.02562 * 13 12 11 15 15 C 1.50708 * 120.00143 * 180.02562 * 13 12 11 16 16 C 1.53003 * 109.47124 * 180.02562 * 15 13 12 17 17 H 1.08998 * 110.21242 * 55.47392 * 16 15 13 18 18 C 1.54480 * 110.24480 * 177.49642 * 16 15 13 19 19 C 1.54628 * 101.76304 * 144.41601 * 18 16 15 20 20 C 1.51285 * 104.19639 * 335.20021 * 19 18 16 21 21 O 1.21278 * 124.94408 * 196.22632 * 20 19 18 22 22 N 1.34419 * 110.11299 * 16.25590 * 20 19 18 23 23 C 1.54885 * 110.49064 * 300.23369 * 10 9 7 24 24 C 1.55242 * 102.58860 * 279.19022 * 23 10 9 25 25 C 1.54276 * 104.22681 * 322.08110 * 24 23 10 26 26 C 1.53876 * 106.59915 * 23.61177 * 25 24 23 27 27 H 0.96993 * 120.00049 * 179.97438 * 1 2 3 28 28 H 0.96993 * 120.00509 * 353.58132 * 9 7 2 29 29 H 1.08997 * 109.47492 * 177.41026 * 11 10 9 30 30 H 1.09001 * 109.46715 * 297.40983 * 11 10 9 31 31 H 0.97003 * 119.99735 * 355.19133 * 12 11 10 32 32 H 1.08997 * 109.47020 * 299.99950 * 15 13 12 33 33 H 1.08996 * 109.46770 * 59.99987 * 15 13 12 34 34 H 1.08994 * 110.97189 * 262.53718 * 18 16 15 35 35 H 1.09000 * 110.96750 * 26.29629 * 18 16 15 36 36 H 1.08999 * 110.48699 * 216.52840 * 19 18 16 37 37 H 1.08994 * 110.59672 * 93.93926 * 19 18 16 38 38 H 0.97007 * 124.34626 * 180.38422 * 22 20 19 39 39 H 1.09003 * 110.75722 * 37.57297 * 23 10 9 40 40 H 1.08997 * 110.75812 * 160.94911 * 23 10 9 41 41 H 1.08995 * 110.47138 * 203.39630 * 24 23 10 42 42 H 1.09000 * 110.58353 * 80.82199 * 24 23 10 43 43 H 1.09000 * 110.02774 * 264.32483 * 25 24 23 44 44 H 1.09000 * 110.02666 * 142.89667 * 25 24 23 45 45 H 1.08992 * 110.02998 * 240.71463 * 26 25 24 46 46 H 1.09003 * 110.02898 * 119.28539 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 3.1039 1.6964 1.2125 6 1 1.2853 2.7464 -0.0006 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0510 -3.6528 -0.1431 11 6 3.0059 -3.8566 1.0349 12 7 2.2490 -3.8220 2.2887 13 6 2.8694 -4.0771 3.4576 14 8 4.0544 -4.3347 3.4717 15 6 2.0906 -4.0421 4.7474 16 6 3.0244 -4.3642 5.9159 17 1 3.8739 -3.6813 5.9183 18 6 2.2578 -4.2717 7.2539 19 6 2.9135 -5.4083 8.0720 20 6 3.4432 -6.3620 7.0238 21 8 3.7779 -7.5086 7.2336 22 7 3.4896 -5.7532 5.8263 23 6 2.8282 -3.6839 -1.4825 24 6 1.7266 -4.0754 -2.5039 25 6 0.8569 -5.1018 -1.7488 26 6 1.0632 -4.8331 -0.2478 27 1 -0.4850 -0.8400 -0.0004 28 1 0.3602 -2.3907 0.0937 29 1 3.5030 -4.8217 0.9370 30 1 3.7523 -3.0622 1.0391 31 1 1.3012 -3.6157 2.2775 32 1 1.6635 -3.0491 4.8871 33 1 1.2894 -4.7800 4.7081 34 1 2.4197 -3.3048 7.7302 35 1 1.1941 -4.4597 7.1078 36 1 2.1720 -5.9040 8.6986 37 1 3.7292 -5.0204 8.6820 38 1 3.7920 -6.1775 5.0080 39 1 3.2405 -2.7015 -1.7129 40 1 3.6152 -4.4376 -1.4550 41 1 2.1716 -4.5302 -3.3889 42 1 1.1338 -3.2037 -2.7810 43 1 1.1768 -6.1145 -1.9942 44 1 -0.1923 -4.9671 -2.0115 45 1 1.4831 -5.7153 0.2352 46 1 0.1140 -4.5681 0.2180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:57 Heat of formation + Delta-G solvation = -80.158410 kcal Electronic energy + Delta-G solvation = -26331.513704 eV Core-core repulsion = 22641.180894 eV Total energy + Delta-G solvation = -3690.332810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.63060 -39.41271 -38.27573 -36.58580 -34.23572 -33.65983 -31.42748 -31.39949 -30.37427 -28.35104 -27.89040 -25.70231 -24.04411 -23.28758 -21.58496 -20.69388 -20.39566 -19.74158 -18.97481 -17.41001 -17.24721 -16.80510 -16.52260 -15.93554 -15.39349 -15.16440 -14.83074 -14.65831 -14.13151 -13.88434 -13.78363 -13.60244 -13.53772 -13.17195 -12.80533 -12.76480 -12.71444 -12.28692 -11.72222 -11.65820 -11.34909 -11.29457 -11.12119 -10.85959 -10.74294 -10.70346 -10.51117 -10.22195 -10.08019 -10.03880 -9.96039 -9.62958 -9.22303 -9.18397 -8.98113 -8.61443 -7.16333 -6.18704 -3.21105 2.51533 2.84638 3.31704 3.45488 3.47061 3.48094 3.65524 4.17401 4.22309 4.48877 4.57750 4.77794 4.91576 5.00430 5.02095 5.07074 5.09793 5.22042 5.37639 5.42010 5.44649 5.51064 5.54878 5.62353 5.67850 5.82362 5.85101 5.86821 6.02371 6.09567 6.14709 6.23637 6.32536 6.44508 6.49054 6.65048 6.73124 6.73596 6.84737 6.95220 7.01519 7.74589 7.85369 8.18917 8.48354 8.66013 9.10149 9.96329 10.11034 11.28576 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.003733 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.119957 B = 7497.905206 C = 8875.545953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.039 4.039 3 Si 1.074 2.926 4 H -0.296 1.296 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.325 4.325 8 H 0.064 0.936 9 N -0.719 5.719 10 C 0.193 3.807 11 C 0.119 3.881 12 N -0.700 5.700 13 C 0.506 3.494 14 O -0.557 6.557 15 C -0.154 4.154 16 C 0.148 3.852 17 H 0.091 0.909 18 C -0.130 4.130 19 C -0.156 4.156 20 C 0.515 3.485 21 O -0.545 6.545 22 N -0.715 5.715 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.123 4.123 27 H 0.254 0.746 28 H 0.367 0.633 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.402 0.598 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.415 0.585 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 -8.553 8.536 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.237 4.237 3 Si 0.905 3.095 4 H -0.223 1.223 5 H -0.223 1.223 6 H -0.211 1.211 7 C -0.455 4.455 8 H 0.082 0.918 9 N -0.362 5.362 10 C 0.101 3.899 11 C -0.007 4.007 12 N -0.349 5.349 13 C 0.291 3.709 14 O -0.436 6.436 15 C -0.194 4.194 16 C 0.042 3.958 17 H 0.109 0.891 18 C -0.168 4.168 19 C -0.196 4.196 20 C 0.301 3.699 21 O -0.423 6.423 22 N -0.370 5.370 23 C -0.168 4.168 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.161 4.161 27 H 0.066 0.934 28 H 0.201 0.799 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.237 0.763 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.255 0.745 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.835 -7.573 8.708 11.685 hybrid contribution -0.423 -1.512 -0.536 1.659 sum 1.412 -9.085 8.172 12.301 Atomic orbital electron populations 1.70908 1.06032 1.28358 1.53415 1.25651 0.96953 1.00782 1.00319 0.83317 0.74313 0.75950 0.75927 1.22296 1.22349 1.21130 1.19882 0.91982 0.85411 1.48270 0.91832 1.42412 1.05271 1.00505 1.88023 1.20554 0.91004 0.86703 0.91683 1.21852 0.95134 1.00181 0.83554 1.45793 1.13648 1.69210 1.06213 1.20489 0.87900 0.77049 0.85425 1.90676 1.15607 1.49966 1.87372 1.22091 0.99410 1.05290 0.92643 1.21429 0.96700 0.83886 0.93808 0.89083 1.22727 1.00368 0.99676 0.94029 1.22345 1.02527 0.96697 0.98060 1.20903 0.77130 0.87090 0.84777 1.90741 1.50631 1.17886 1.83048 1.46378 1.65989 1.13440 1.11229 1.22882 0.96848 1.01344 0.95722 1.22246 0.97201 0.98496 0.97102 1.22058 0.99774 0.98616 0.95201 1.22381 0.99407 0.97853 0.96501 0.93446 0.79895 0.92681 0.91726 0.76340 0.87082 0.88433 0.88776 0.89585 0.88126 0.87814 0.74505 0.90435 0.92863 0.92960 0.91278 0.92669 0.92461 0.91963 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -26.78 13.70 55.49 0.76 -26.02 16 2 C -0.04 -1.04 5.50 -17.43 -0.10 -1.13 16 3 Si 1.07 24.64 29.92 -169.99 -5.09 19.55 16 4 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.32 -8.07 8.54 -15.06 -0.13 -8.20 16 8 H 0.06 1.62 7.13 -52.49 -0.37 1.25 16 9 N -0.72 -15.21 4.67 -45.70 -0.21 -15.42 16 10 C 0.19 3.32 0.52 -130.16 -0.07 3.25 16 11 C 0.12 2.04 4.35 -4.04 -0.02 2.02 16 12 N -0.70 -10.70 5.24 -60.29 -0.32 -11.01 16 13 C 0.51 7.35 7.63 -10.98 -0.08 7.27 16 14 O -0.56 -9.78 14.87 5.56 0.08 -9.69 16 15 C -0.15 -1.54 5.32 -27.88 -0.15 -1.69 16 16 C 0.15 1.44 3.02 -67.01 -0.20 1.23 16 17 H 0.09 0.97 7.99 -51.93 -0.42 0.56 16 18 C -0.13 -0.87 6.69 -25.10 -0.17 -1.04 16 19 C -0.16 -1.25 6.86 -26.74 -0.18 -1.44 16 20 C 0.51 6.49 8.43 -10.86 -0.09 6.40 16 21 O -0.55 -9.20 18.03 5.56 0.10 -9.10 16 22 N -0.71 -8.50 5.60 -52.76 -0.30 -8.79 16 23 C -0.13 -2.18 5.90 -24.55 -0.14 -2.32 16 24 C -0.11 -1.77 6.80 -24.88 -0.17 -1.94 16 25 C -0.12 -1.66 6.80 -25.61 -0.17 -1.83 16 26 C -0.12 -1.80 5.72 -25.61 -0.15 -1.94 16 27 H 0.25 7.05 6.79 -40.82 -0.28 6.77 16 28 H 0.37 8.13 6.33 -40.82 -0.26 7.87 16 29 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.06 1.30 7.48 -51.93 -0.39 0.91 16 31 H 0.40 5.89 8.06 -40.82 -0.33 5.56 16 32 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.49 7.91 -51.93 -0.41 0.08 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.41 5.52 7.89 -40.82 -0.32 5.20 16 39 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 40 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.84 7.79 -51.93 -0.40 0.43 16 46 H 0.06 0.89 7.73 -51.93 -0.40 0.49 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -31.92 367.11 -8.65 -40.57 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -7.39 Total: 15.74 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.82 Total: -1.35 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.06 Total: -61.25 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.09 Total: 19.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.92 -8.65 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.590 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds