Wall clock time and date at job start Tue Mar 31 2020 09:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47193 * 239.99827 * 3 2 1 5 5 H 1.48494 * 109.47420 * 119.99737 * 3 2 1 6 6 H 1.48500 * 109.47062 * 359.97438 * 3 2 1 7 7 C 1.38814 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99360 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99612 * 173.57310 * 9 7 2 11 11 C 1.53002 * 110.43520 * 62.77605 * 10 9 7 12 12 N 1.46498 * 109.47212 * 57.40479 * 11 10 9 13 13 C 1.34771 * 120.00063 * 175.18270 * 12 11 10 14 14 O 1.21279 * 120.00286 * 0.02562 * 13 12 11 15 15 C 1.50708 * 120.00143 * 180.02562 * 13 12 11 16 16 C 1.53003 * 109.47124 * 180.02562 * 15 13 12 17 17 H 1.08998 * 110.21242 * 55.47392 * 16 15 13 18 18 C 1.54480 * 110.24480 * 177.49642 * 16 15 13 19 19 C 1.54628 * 101.76304 * 144.41601 * 18 16 15 20 20 C 1.51285 * 104.19639 * 335.20021 * 19 18 16 21 21 O 1.21278 * 124.94408 * 196.22632 * 20 19 18 22 22 N 1.34419 * 110.11299 * 16.25590 * 20 19 18 23 23 C 1.54885 * 110.49064 * 300.23369 * 10 9 7 24 24 C 1.55242 * 102.58860 * 279.19022 * 23 10 9 25 25 C 1.54276 * 104.22681 * 322.08110 * 24 23 10 26 26 C 1.53876 * 106.59915 * 23.61177 * 25 24 23 27 27 H 0.96993 * 120.00049 * 179.97438 * 1 2 3 28 28 H 0.96993 * 120.00509 * 353.58132 * 9 7 2 29 29 H 1.08997 * 109.47492 * 177.41026 * 11 10 9 30 30 H 1.09001 * 109.46715 * 297.40983 * 11 10 9 31 31 H 0.97003 * 119.99735 * 355.19133 * 12 11 10 32 32 H 1.08997 * 109.47020 * 299.99950 * 15 13 12 33 33 H 1.08996 * 109.46770 * 59.99987 * 15 13 12 34 34 H 1.08994 * 110.97189 * 262.53718 * 18 16 15 35 35 H 1.09000 * 110.96750 * 26.29629 * 18 16 15 36 36 H 1.08999 * 110.48699 * 216.52840 * 19 18 16 37 37 H 1.08994 * 110.59672 * 93.93926 * 19 18 16 38 38 H 0.97007 * 124.34626 * 180.38422 * 22 20 19 39 39 H 1.09003 * 110.75722 * 37.57297 * 23 10 9 40 40 H 1.08997 * 110.75812 * 160.94911 * 23 10 9 41 41 H 1.08995 * 110.47138 * 203.39630 * 24 23 10 42 42 H 1.09000 * 110.58353 * 80.82199 * 24 23 10 43 43 H 1.09000 * 110.02774 * 264.32483 * 25 24 23 44 44 H 1.09000 * 110.02666 * 142.89667 * 25 24 23 45 45 H 1.08992 * 110.02998 * 240.71463 * 26 25 24 46 46 H 1.09003 * 110.02898 * 119.28539 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 3.1039 1.6964 1.2125 6 1 1.2853 2.7464 -0.0006 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0510 -3.6528 -0.1431 11 6 3.0059 -3.8566 1.0349 12 7 2.2490 -3.8220 2.2887 13 6 2.8694 -4.0771 3.4576 14 8 4.0544 -4.3347 3.4717 15 6 2.0906 -4.0421 4.7474 16 6 3.0244 -4.3642 5.9159 17 1 3.8739 -3.6813 5.9183 18 6 2.2578 -4.2717 7.2539 19 6 2.9135 -5.4083 8.0720 20 6 3.4432 -6.3620 7.0238 21 8 3.7779 -7.5086 7.2336 22 7 3.4896 -5.7532 5.8263 23 6 2.8282 -3.6839 -1.4825 24 6 1.7266 -4.0754 -2.5039 25 6 0.8569 -5.1018 -1.7488 26 6 1.0632 -4.8331 -0.2478 27 1 -0.4850 -0.8400 -0.0004 28 1 0.3602 -2.3907 0.0937 29 1 3.5030 -4.8217 0.9370 30 1 3.7523 -3.0622 1.0391 31 1 1.3012 -3.6157 2.2775 32 1 1.6635 -3.0491 4.8871 33 1 1.2894 -4.7800 4.7081 34 1 2.4197 -3.3048 7.7302 35 1 1.1941 -4.4597 7.1078 36 1 2.1720 -5.9040 8.6986 37 1 3.7292 -5.0204 8.6820 38 1 3.7920 -6.1775 5.0080 39 1 3.2405 -2.7015 -1.7129 40 1 3.6152 -4.4376 -1.4550 41 1 2.1716 -4.5302 -3.3889 42 1 1.1338 -3.2037 -2.7810 43 1 1.1768 -6.1145 -1.9942 44 1 -0.1923 -4.9671 -2.0115 45 1 1.4831 -5.7153 0.2352 46 1 0.1140 -4.5681 0.2180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753670259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:56 Heat of formation + Delta-G solvation = -103.629977 kcal Electronic energy + Delta-G solvation = -26332.531508 eV Core-core repulsion = 22641.180894 eV Total energy + Delta-G solvation = -3691.350613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57800 -40.64009 -39.59071 -37.59096 -35.69882 -35.29945 -32.57118 -32.13431 -31.81945 -29.63634 -29.37952 -26.73589 -25.63056 -24.73902 -22.37234 -21.72672 -21.47846 -20.95469 -20.42790 -19.00546 -18.30862 -18.00394 -17.49618 -17.32532 -16.68181 -16.25951 -16.21141 -15.72799 -15.68964 -15.43102 -14.99374 -14.82985 -14.47753 -14.28354 -14.06994 -13.75281 -13.58479 -13.41185 -12.97405 -12.75238 -12.64594 -12.44259 -12.30221 -12.26639 -12.05949 -11.91979 -11.91884 -11.83854 -11.63930 -11.32153 -11.06667 -10.96686 -10.93375 -10.74174 -10.13255 -9.94776 -9.03425 -8.26806 -5.22025 1.56959 1.59567 1.65713 1.68890 1.82286 2.32681 2.43160 2.72344 3.39620 3.44629 3.52612 3.64207 3.72166 3.80431 3.85189 3.95099 4.02654 4.21904 4.33198 4.41644 4.42491 4.52461 4.57074 4.63555 4.72041 4.78019 4.84572 4.88704 4.91039 4.96225 5.03999 5.11742 5.11950 5.14430 5.23991 5.32483 5.39135 5.51819 5.61169 5.74295 5.81935 6.08697 6.61846 6.64803 7.18631 7.20969 7.30254 8.08212 8.19681 9.24535 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.003733 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.119957 B = 7497.905206 C = 8875.545953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.093 4.093 3 Si 1.111 2.889 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.295 1.295 7 C -0.304 4.304 8 H 0.053 0.947 9 N -0.721 5.721 10 C 0.188 3.812 11 C 0.129 3.871 12 N -0.701 5.701 13 C 0.500 3.500 14 O -0.590 6.590 15 C -0.143 4.143 16 C 0.143 3.857 17 H 0.079 0.921 18 C -0.115 4.115 19 C -0.147 4.147 20 C 0.503 3.497 21 O -0.599 6.599 22 N -0.718 5.718 23 C -0.130 4.130 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.115 4.115 27 H 0.248 0.752 28 H 0.363 0.637 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.406 0.594 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.403 0.597 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -9.158 9.615 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.286 4.286 3 Si 0.939 3.061 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.221 1.221 7 C -0.436 4.436 8 H 0.071 0.929 9 N -0.363 5.363 10 C 0.097 3.903 11 C 0.002 3.998 12 N -0.350 5.350 13 C 0.288 3.712 14 O -0.472 6.472 15 C -0.183 4.183 16 C 0.038 3.962 17 H 0.097 0.903 18 C -0.153 4.153 19 C -0.187 4.187 20 C 0.292 3.708 21 O -0.481 6.481 22 N -0.370 5.370 23 C -0.170 4.170 24 C -0.148 4.148 25 C -0.151 4.151 26 C -0.153 4.153 27 H 0.058 0.942 28 H 0.196 0.804 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.242 0.758 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.241 0.759 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.116 -8.179 9.789 12.805 hybrid contribution -0.090 -1.392 -0.928 1.675 sum 1.026 -9.571 8.861 13.083 Atomic orbital electron populations 1.70986 1.06856 1.28041 1.56465 1.26599 0.97069 1.03505 1.01392 0.82787 0.73494 0.73201 0.76580 1.21439 1.21171 1.22136 1.19982 0.91585 0.86706 1.45280 0.92884 1.42438 1.05035 1.00937 1.87931 1.20766 0.91617 0.86158 0.91712 1.21603 0.94488 0.99195 0.84542 1.45805 1.13703 1.69471 1.06006 1.21336 0.87791 0.75662 0.86451 1.90663 1.17362 1.51269 1.87910 1.22126 0.99243 1.07147 0.89773 1.21602 0.96772 0.82283 0.95569 0.90270 1.22782 1.00701 1.00362 0.91444 1.22390 1.03334 0.95933 0.97007 1.21751 0.76284 0.86951 0.85832 1.90703 1.53047 1.20374 1.83930 1.46581 1.65350 1.14324 1.10778 1.22877 0.97844 1.00252 0.95995 1.22201 0.96661 0.98068 0.97836 1.22054 0.99677 0.99294 0.94115 1.22327 0.98648 0.96936 0.97423 0.94185 0.80391 0.91825 0.95360 0.75805 0.85019 0.86231 0.86184 0.87731 0.86503 0.86367 0.75879 0.93740 0.90739 0.90785 0.94346 0.90052 0.92099 0.90124 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -56.11 13.70 21.65 0.30 -55.82 16 2 C -0.09 -5.00 5.50 84.86 0.47 -4.53 16 3 Si 1.11 50.20 29.92 68.60 2.05 52.25 16 4 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 7 C -0.30 -15.29 8.54 84.03 0.72 -14.57 16 8 H 0.05 2.76 7.13 -2.91 -0.02 2.74 16 9 N -0.72 -30.63 4.67 -298.50 -1.39 -32.02 16 10 C 0.19 6.36 0.52 4.68 0.00 6.37 16 11 C 0.13 4.37 4.35 86.38 0.38 4.75 16 12 N -0.70 -20.78 5.24 -463.06 -2.43 -23.20 16 13 C 0.50 14.01 7.63 87.66 0.67 14.68 16 14 O -0.59 -20.71 14.87 -3.03 -0.05 -20.76 16 15 C -0.14 -2.50 5.32 29.85 0.16 -2.34 16 16 C 0.14 2.47 3.02 45.45 0.14 2.61 16 17 H 0.08 1.58 7.99 -2.39 -0.02 1.56 16 18 C -0.12 -1.09 6.69 31.65 0.21 -0.87 16 19 C -0.15 -1.94 6.86 30.59 0.21 -1.73 16 20 C 0.50 12.28 8.43 87.90 0.74 13.03 16 21 O -0.60 -20.48 18.03 -3.02 -0.05 -20.53 16 22 N -0.72 -16.50 5.60 -439.44 -2.46 -18.96 16 23 C -0.13 -4.35 5.90 32.01 0.19 -4.16 16 24 C -0.11 -3.31 6.80 31.80 0.22 -3.09 16 25 C -0.11 -2.88 6.80 31.32 0.21 -2.67 16 26 C -0.12 -3.10 5.72 31.32 0.18 -2.92 16 27 H 0.25 13.95 6.79 -92.71 -0.63 13.32 16 28 H 0.36 16.13 6.33 -92.71 -0.59 15.55 16 29 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 30 H 0.03 1.16 7.48 -2.39 -0.02 1.14 16 31 H 0.41 11.36 8.06 -92.71 -0.75 10.61 16 32 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.67 7.91 -2.39 -0.02 0.65 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.40 10.82 7.89 -92.70 -0.73 10.09 16 39 H 0.04 1.77 7.16 -2.39 -0.02 1.75 16 40 H 0.07 2.17 8.06 -2.39 -0.02 2.15 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.91 7.79 -2.39 -0.02 1.89 16 46 H 0.06 1.72 7.73 -2.39 -0.02 1.70 16 Total: -1.00 -72.26 367.11 -0.46 -72.72 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.92 Total: 41.79 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 4.49 Total: 4.54 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.98 Total: -130.01 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.10 Total: -41.29 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -72.26 -0.46 -72.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.914 kcal (2) G-P(sol) polarization free energy of solvation -72.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds