Wall clock time and date at job start Tue Mar 31 2020 09:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99726 * 2 1 4 4 H 1.48503 * 109.47335 * 270.00113 * 3 2 1 5 5 H 1.48502 * 109.47404 * 30.00090 * 3 2 1 6 6 H 1.48507 * 109.47086 * 150.00240 * 3 2 1 7 7 C 1.38810 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99722 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99762 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99579 * 185.32156 * 9 7 2 11 11 C 1.52999 * 110.43526 * 59.33838 * 10 9 7 12 12 N 1.46506 * 109.46892 * 57.91057 * 11 10 9 13 13 C 1.34777 * 119.99619 * 175.60441 * 12 11 10 14 14 O 1.21276 * 120.00254 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99701 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47164 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.21395 * 304.52962 * 16 15 13 18 18 C 1.54478 * 110.24420 * 182.50223 * 16 15 13 19 19 C 1.54629 * 101.76327 * 266.41486 * 18 16 15 20 20 C 1.51283 * 104.19675 * 335.20320 * 19 18 16 21 21 O 1.21276 * 124.93804 * 196.27284 * 20 19 18 22 22 N 1.34422 * 110.11447 * 16.25521 * 20 19 18 23 23 C 1.54888 * 110.49064 * 296.65475 * 10 9 7 24 24 C 1.54897 * 102.74923 * 279.26814 * 23 10 9 25 25 C 1.54264 * 104.18973 * 322.05374 * 24 23 10 26 26 C 1.53876 * 106.60205 * 23.61217 * 25 24 23 27 27 H 0.97005 * 120.00541 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99753 * 5.04934 * 9 7 2 29 29 H 1.09005 * 109.47261 * 177.90534 * 11 10 9 30 30 H 1.09001 * 109.47226 * 297.90943 * 11 10 9 31 31 H 0.96993 * 120.00063 * 355.60101 * 12 11 10 32 32 H 1.08993 * 109.47162 * 299.99739 * 15 13 12 33 33 H 1.09001 * 109.46972 * 59.99868 * 15 13 12 34 34 H 1.09000 * 110.97202 * 24.53578 * 18 16 15 35 35 H 1.09004 * 110.96214 * 148.29847 * 18 16 15 36 36 H 1.09001 * 110.48162 * 216.52575 * 19 18 16 37 37 H 1.08995 * 110.48184 * 93.88590 * 19 18 16 38 38 H 0.96998 * 124.34516 * 180.43088 * 22 20 19 39 39 H 1.09002 * 110.75172 * 37.57600 * 23 10 9 40 40 H 1.08997 * 110.76100 * 160.95111 * 23 10 9 41 41 H 1.08999 * 110.48438 * 203.37857 * 24 23 10 42 42 H 1.08998 * 110.48814 * 80.73096 * 24 23 10 43 43 H 1.09002 * 110.03587 * 264.32322 * 25 24 23 44 44 H 1.09007 * 110.07094 * 142.91959 * 25 24 23 45 45 H 1.09000 * 110.02671 * 240.71070 * 26 25 24 46 46 H 1.08997 * 110.07105 * 119.30656 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6528 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1121 -2.4652 -0.1193 11 6 3.7455 -3.1752 -1.4241 12 7 4.0430 -2.2968 -2.5582 13 6 3.8831 -2.7463 -3.8187 14 8 3.4934 -3.8780 -4.0141 15 6 4.1886 -1.8425 -4.9854 16 6 3.9262 -2.5918 -6.2933 17 1 4.4988 -3.5189 -6.3176 18 6 4.2935 -1.7024 -7.5018 19 6 2.9334 -1.0470 -7.8358 20 6 1.9096 -2.0198 -7.2935 21 8 0.7334 -2.0266 -7.5887 22 7 2.4936 -2.8758 -6.4372 23 6 3.8200 -3.3773 1.0980 24 6 4.7628 -2.8070 2.1866 25 6 6.0466 -2.4334 1.4170 26 6 5.6328 -2.2161 -0.0491 27 1 -0.4851 0.8400 -0.0004 28 1 3.8646 -0.3652 0.0729 29 1 4.3260 -4.0934 -1.5137 30 1 2.6825 -3.4162 -1.4203 31 1 4.3550 -1.3918 -2.4019 32 1 3.5511 -0.9597 -4.9378 33 1 5.2345 -1.5381 -4.9450 34 1 5.0310 -0.9499 -7.2225 35 1 4.6510 -2.3061 -8.3360 36 1 2.8189 -0.9343 -8.9139 37 1 2.8430 -0.0813 -7.3386 38 1 2.0279 -3.5897 -5.9742 39 1 2.7778 -3.2895 1.4051 40 1 4.0717 -4.4138 0.8734 41 1 4.9768 -3.5642 2.9407 42 1 4.3229 -1.9223 2.6469 43 1 6.7716 -3.2446 1.4841 44 1 6.4736 -1.5169 1.8243 45 1 6.1571 -2.9219 -0.6934 46 1 5.8583 -1.1942 -0.3538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:00 Heat of formation + Delta-G solvation = -75.244391 kcal Electronic energy + Delta-G solvation = -26610.072479 eV Core-core repulsion = 22919.952758 eV Total energy + Delta-G solvation = -3690.119722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59258 -39.35117 -38.26225 -36.49894 -34.19655 -33.35758 -31.37257 -31.19135 -30.66647 -28.38946 -28.37943 -25.95223 -24.10083 -23.08096 -21.41062 -20.60605 -20.31141 -19.75332 -18.74094 -17.62055 -17.50306 -16.86058 -16.08260 -15.71832 -15.56619 -15.02608 -14.63961 -14.59453 -14.32747 -13.90388 -13.77171 -13.45749 -13.09198 -12.95051 -12.93072 -12.78473 -12.66675 -12.37366 -11.87764 -11.71157 -11.43670 -11.27644 -11.12691 -10.96541 -10.86705 -10.75402 -10.54783 -10.38079 -10.16201 -10.01125 -9.83687 -9.60701 -9.58045 -9.10070 -8.99262 -8.55748 -7.37688 -5.82949 -3.20777 2.65097 2.92905 3.27303 3.28252 3.37902 3.44408 3.51763 4.26266 4.31660 4.50063 4.51353 4.84675 4.90766 4.97200 4.98260 5.03084 5.19766 5.26254 5.32951 5.39742 5.45374 5.50328 5.62689 5.64699 5.66380 5.79689 5.83556 5.84575 5.99055 6.08907 6.11961 6.21224 6.31276 6.42309 6.49172 6.64401 6.71776 6.84911 6.89785 6.96542 7.16400 7.89221 7.93486 8.33250 8.35285 8.55621 9.12308 9.83837 10.02381 11.34936 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012580 B = 0.004433 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.217043 B = 6314.943607 C = 7542.295030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.735 5.735 10 C 0.194 3.806 11 C 0.121 3.879 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.556 6.556 15 C -0.159 4.159 16 C 0.149 3.851 17 H 0.096 0.904 18 C -0.129 4.129 19 C -0.159 4.159 20 C 0.514 3.486 21 O -0.539 6.539 22 N -0.715 5.715 23 C -0.129 4.129 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.125 4.125 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.400 0.600 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.418 0.582 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.838 -3.023 -8.693 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.378 5.378 10 C 0.102 3.898 11 C -0.005 4.005 12 N -0.351 5.351 13 C 0.297 3.703 14 O -0.436 6.436 15 C -0.200 4.200 16 C 0.042 3.958 17 H 0.114 0.886 18 C -0.166 4.166 19 C -0.199 4.199 20 C 0.300 3.700 21 O -0.417 6.417 22 N -0.370 5.370 23 C -0.169 4.169 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.163 4.163 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.234 0.766 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.258 0.742 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.738 -3.787 -9.028 18.534 hybrid contribution 0.460 1.556 0.561 1.716 sum 16.197 -2.231 -8.468 18.413 Atomic orbital electron populations 1.69688 1.05124 1.25801 1.56990 1.24664 0.95102 0.96997 1.01961 0.86634 0.79171 0.85465 0.77605 1.21248 1.21866 1.20453 1.18918 0.80377 0.94553 1.43145 0.89148 1.42797 1.04037 1.01931 1.89007 1.20582 0.89703 0.87746 0.91771 1.21800 1.01418 0.91792 0.85460 1.45755 1.66663 1.17372 1.05284 1.20389 0.77719 0.87901 0.84286 1.90638 1.47222 1.20197 1.85532 1.22224 1.04248 1.00015 0.93539 1.21331 0.82551 0.98947 0.92953 0.88570 1.22679 0.97100 0.99289 0.97571 1.22365 0.94241 0.99663 1.03616 1.20922 0.88296 0.81923 0.78862 1.90756 1.16543 1.72595 1.61764 1.46332 1.10284 1.34612 1.45819 1.22854 1.00900 0.97398 0.95789 1.22215 0.95089 1.00534 0.97394 1.22076 0.97832 1.00463 0.95386 1.22413 0.95936 1.01234 0.96765 0.93019 0.80478 0.92518 0.91177 0.76619 0.88365 0.87843 0.88919 0.89628 0.88162 0.87762 0.74153 0.90191 0.92559 0.92769 0.91318 0.92532 0.92532 0.91599 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.97 55.49 0.78 -27.56 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 20.74 27.79 -169.99 -4.72 16.02 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.06 6.45 56.52 0.36 -5.70 16 7 C -0.24 -6.14 9.06 -15.06 -0.14 -6.28 16 8 H 0.09 2.57 7.35 -52.49 -0.39 2.18 16 9 N -0.73 -14.97 4.51 -45.70 -0.21 -15.17 16 10 C 0.19 3.21 0.52 -130.17 -0.07 3.14 16 11 C 0.12 2.06 4.31 -4.04 -0.02 2.04 16 12 N -0.70 -10.75 5.24 -60.29 -0.32 -11.07 16 13 C 0.51 7.58 7.71 -10.98 -0.08 7.50 16 14 O -0.56 -9.86 14.95 5.56 0.08 -9.77 16 15 C -0.16 -1.64 5.31 -27.88 -0.15 -1.79 16 16 C 0.15 1.45 3.02 -67.01 -0.20 1.25 16 17 H 0.10 0.91 7.99 -51.93 -0.42 0.50 16 18 C -0.13 -0.86 6.70 -25.10 -0.17 -1.03 16 19 C -0.16 -1.46 6.86 -26.74 -0.18 -1.64 16 20 C 0.51 7.37 8.43 -10.86 -0.09 7.28 16 21 O -0.54 -10.31 18.03 5.56 0.10 -10.21 16 22 N -0.71 -9.47 5.46 -52.76 -0.29 -9.76 16 23 C -0.13 -2.10 5.90 -24.73 -0.15 -2.25 16 24 C -0.11 -1.66 6.79 -25.07 -0.17 -1.83 16 25 C -0.12 -1.52 6.80 -25.61 -0.17 -1.69 16 26 C -0.13 -1.67 5.68 -25.61 -0.15 -1.82 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.36 7.32 5.32 -40.82 -0.22 7.10 16 29 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 30 H 0.07 1.45 7.51 -51.93 -0.39 1.06 16 31 H 0.40 5.72 8.06 -40.82 -0.33 5.39 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.42 7.89 -51.93 -0.41 0.01 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.42 6.25 8.19 -40.82 -0.33 5.92 16 39 H 0.08 1.53 7.17 -51.93 -0.37 1.16 16 40 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 46 H 0.06 0.80 7.75 -51.93 -0.40 0.39 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -33.83 365.97 -8.37 -42.20 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -7.48 Total: 16.78 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.83 Total: 3.03 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.04 Total: -63.56 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.18 Total: -19.99 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.72 Total: 16.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.83 -8.37 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.049 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds