Wall clock time and date at job start Tue Mar 31 2020 10:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33700 * 126.26943 * 2 1 4 4 C 1.30617 * 108.99236 * 180.30695 * 3 2 1 5 5 C 1.50698 * 125.42221 * 179.70937 * 4 3 2 6 6 C 1.52999 * 109.47118 * 300.02199 * 5 4 3 7 7 C 1.53005 * 109.46856 * 60.02480 * 5 4 3 8 8 O 1.33671 * 109.15439 * 359.72744 * 4 3 2 9 9 C 1.35344 * 107.68509 * 0.02562 * 8 4 3 10 10 C 1.46719 * 126.64204 * 179.97438 * 9 8 4 11 11 O 1.21685 * 119.99577 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00205 * 0.29588 * 10 9 8 13 13 C 1.46505 * 120.00121 * 179.72416 * 12 10 9 14 14 C 1.52995 * 109.47085 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47667 * 64.99729 * 14 13 12 16 16 C 1.52998 * 109.47302 * 185.00414 * 14 13 12 17 17 N 1.46506 * 109.47060 * 304.99927 * 14 13 12 18 18 C 1.46499 * 119.99878 * 300.00145 * 17 14 13 19 19 C 1.36935 * 119.99825 * 120.00034 * 17 14 13 20 20 H 1.08000 * 120.00627 * 324.50969 * 19 17 14 21 21 C 1.38814 * 119.99778 * 144.51245 * 19 17 14 22 22 N 1.31623 * 120.00093 * 157.63983 * 21 19 17 23 23 Si 1.86803 * 120.00100 * 337.63451 * 21 19 17 24 24 H 1.48504 * 109.46802 * 95.57450 * 23 21 19 25 25 H 1.48496 * 109.47072 * 215.57639 * 23 21 19 26 26 H 1.48497 * 109.46874 * 335.57682 * 23 21 19 27 27 H 1.08999 * 109.47305 * 270.14682 * 1 2 3 28 28 H 1.08998 * 109.47840 * 30.15145 * 1 2 3 29 29 H 1.09008 * 109.46819 * 150.14789 * 1 2 3 30 30 H 1.09003 * 109.47318 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.47253 * 60.00343 * 6 5 4 32 32 H 1.09006 * 109.46808 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47128 * 299.99679 * 6 5 4 34 34 H 1.08998 * 109.47624 * 60.00018 * 7 5 4 35 35 H 1.09004 * 109.46509 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47240 * 299.99489 * 7 5 4 37 37 H 0.97006 * 120.00125 * 359.73153 * 12 10 9 38 38 H 1.09005 * 109.47010 * 300.00224 * 13 12 10 39 39 H 1.08996 * 109.46634 * 60.00529 * 13 12 10 40 40 H 1.09005 * 109.46986 * 299.99874 * 16 14 13 41 41 H 1.09002 * 109.47319 * 59.99101 * 16 14 13 42 42 H 1.08999 * 109.47372 * 180.02562 * 16 14 13 43 43 H 1.09007 * 109.47052 * 87.82906 * 18 17 14 44 44 H 1.09007 * 109.47026 * 207.82269 * 18 17 14 45 45 H 1.08991 * 109.47202 * 327.82368 * 18 17 14 46 46 H 0.96994 * 119.99963 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6900 -0.0066 5 6 4.7438 1.6033 -0.0151 6 6 4.7049 2.4843 -1.2654 7 6 4.7200 2.4877 1.2332 8 8 3.5889 -0.6460 -0.0050 9 6 2.3136 -1.0991 0.0023 10 6 1.8828 -2.5016 0.0060 11 8 0.6967 -2.7736 0.0122 12 7 2.8005 -3.4886 0.0079 13 6 2.3702 -4.8890 0.0177 14 6 3.5993 -5.8001 0.0186 15 1 4.1533 -5.6622 0.9472 16 6 3.1529 -7.2589 -0.0970 17 7 4.4593 -5.4611 -1.1180 18 6 3.9422 -5.5658 -2.4846 19 6 5.7465 -5.0465 -0.9028 20 1 5.9813 -4.4382 -0.0418 21 6 6.7498 -5.4080 -1.7915 22 7 7.8533 -4.6941 -1.8641 23 14 6.5340 -6.9076 -2.8842 24 1 6.0176 -6.4835 -4.2104 25 1 7.8432 -7.5868 -3.0569 26 1 5.5696 -7.8445 -2.2540 27 1 -0.3634 0.0026 1.0276 28 1 -0.3635 0.8886 -0.5162 29 1 -0.3633 -0.8914 -0.5116 30 1 5.6557 1.0060 -0.0199 31 1 3.7931 3.0817 -1.2606 32 1 5.5722 3.1446 -1.2717 33 1 4.7219 1.8542 -2.1546 34 1 4.7478 1.8601 2.1238 35 1 5.5873 3.1479 1.2272 36 1 3.8083 3.0850 1.2379 37 1 3.7460 -3.2717 0.0030 38 1 1.7759 -5.0803 0.9112 39 1 1.7689 -5.0904 -0.8688 40 1 2.5129 -7.5112 0.7486 41 1 2.5989 -7.3969 -1.0256 42 1 4.0285 -7.9081 -0.0959 43 1 3.4579 -4.6296 -2.7626 44 1 4.7655 -5.7664 -3.1703 45 1 3.2185 -6.3790 -2.5380 46 1 8.5545 -4.9469 -2.4847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755320708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:42 Heat of formation + Delta-G solvation = -2.874096 kcal Electronic energy + Delta-G solvation = -26495.892254 eV Core-core repulsion = 22808.910744 eV Total energy + Delta-G solvation = -3686.981510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.36661 -39.31879 -37.04692 -35.96355 -35.15739 -33.87017 -32.17314 -30.97864 -30.21948 -28.03057 -27.38787 -26.28081 -25.82015 -24.08562 -23.25009 -21.68373 -20.55818 -20.23927 -19.51577 -17.77760 -17.01369 -16.84221 -16.23759 -15.80597 -15.76612 -14.72165 -14.62939 -14.51687 -14.18839 -13.86080 -13.38352 -13.28338 -13.18050 -13.01759 -12.72808 -12.46719 -12.38393 -12.30389 -12.27482 -12.26280 -11.89174 -11.62593 -11.49821 -11.34645 -11.26004 -10.93857 -10.88699 -10.71452 -10.53556 -10.19498 -10.02432 -9.92096 -9.64017 -8.94550 -8.60989 -8.53548 -6.98302 -6.08361 -3.49506 0.93731 2.45324 2.47750 3.26270 3.28473 3.42023 3.44179 3.46894 3.87761 4.44966 4.63748 4.73800 4.82511 4.86408 4.89331 5.12257 5.20839 5.35384 5.44122 5.46754 5.51336 5.61462 5.63656 5.69958 5.73433 5.75271 5.87802 5.89957 5.95006 5.97747 6.01732 6.06565 6.08960 6.13956 6.30293 6.36899 6.46637 6.59786 6.64407 6.71542 6.84183 7.58339 7.85269 7.92951 8.23698 8.33582 8.86236 9.60905 10.00007 11.06702 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.004419 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.732845 B = 6334.151991 C = 7903.941917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.071 3.929 3 N -0.487 5.487 4 C 0.224 3.776 5 C -0.003 4.003 6 C -0.143 4.143 7 C -0.142 4.142 8 O -0.178 6.178 9 C -0.111 4.111 10 C 0.603 3.397 11 O -0.532 6.532 12 N -0.692 5.692 13 C 0.107 3.893 14 C 0.155 3.845 15 H 0.079 0.921 16 C -0.161 4.161 17 N -0.605 5.605 18 C 0.111 3.889 19 C -0.275 4.275 20 H 0.080 0.920 21 C 0.037 3.963 22 N -0.898 5.898 23 Si 0.885 3.115 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.269 1.269 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.417 0.583 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.014 0.986 44 H 0.045 0.955 45 H 0.032 0.968 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 9.989 4.444 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 N -0.217 5.217 4 C 0.018 3.982 5 C -0.022 4.022 6 C -0.201 4.201 7 C -0.200 4.200 8 O -0.064 6.064 9 C -0.166 4.166 10 C 0.387 3.613 11 O -0.412 6.412 12 N -0.342 5.342 13 C -0.018 4.018 14 C 0.048 3.952 15 H 0.098 0.902 16 C -0.221 4.221 17 N -0.329 5.329 18 C -0.034 4.034 19 C -0.403 4.403 20 H 0.098 0.902 21 C -0.164 4.164 22 N -0.538 5.538 23 Si 0.716 3.284 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.194 1.194 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.255 0.745 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.716 10.364 4.378 14.865 hybrid contribution 0.805 -1.563 -0.829 1.944 sum -8.911 8.800 3.549 13.017 Atomic orbital electron populations 1.20326 0.85515 1.04091 1.03384 1.21999 0.98168 0.86490 0.98682 1.70241 1.00284 1.30974 1.20172 1.26521 0.95526 0.79341 0.96813 1.19785 0.90856 0.93204 0.98363 1.21836 1.03228 0.99367 0.95634 1.21833 1.03281 0.99320 0.95536 1.84547 1.29624 1.23509 1.68704 1.23010 0.81334 0.96460 1.15821 1.16346 0.85826 0.81441 0.77645 1.90801 1.15848 1.82067 1.52533 1.45868 1.10730 1.06051 1.71561 1.22025 0.98488 0.79974 1.01310 1.20763 0.90199 0.91326 0.92957 0.90245 1.22205 1.01216 0.97995 1.00688 1.44160 1.10951 1.78114 0.99680 1.21289 0.97281 0.97681 0.87105 1.18759 0.82121 1.26891 1.12533 0.90201 1.25423 0.95063 0.97477 0.98481 1.69860 1.08525 1.37655 1.37798 0.86842 0.76071 0.85351 0.80092 1.21676 1.23211 1.19382 0.90337 0.90794 0.88745 0.87710 0.91284 0.90811 0.91983 0.92168 0.90824 0.91259 0.74512 0.91711 0.91816 0.93216 0.93133 0.92034 0.96737 0.93721 0.94986 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.87 36.00 0.36 -0.63 16 2 C 0.07 1.12 7.16 -82.46 -0.59 0.53 16 3 N -0.49 -7.42 11.26 -7.07 -0.08 -7.50 16 4 C 0.22 3.28 6.82 -12.80 -0.09 3.19 16 5 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 6 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 7 C -0.14 -1.26 9.18 37.16 0.34 -0.92 16 8 O -0.18 -3.03 10.57 4.41 0.05 -2.98 16 9 C -0.11 -1.90 7.18 -36.84 -0.26 -2.17 16 10 C 0.60 10.78 7.79 -12.84 -0.10 10.68 16 11 O -0.53 -10.01 14.80 5.20 0.08 -9.93 16 12 N -0.69 -12.30 5.38 -61.61 -0.33 -12.63 16 13 C 0.11 1.79 4.97 -4.04 -0.02 1.77 16 14 C 0.16 2.80 2.88 -67.93 -0.20 2.61 16 15 H 0.08 1.45 7.89 -51.93 -0.41 1.04 16 16 C -0.16 -2.59 9.17 37.16 0.34 -2.25 16 17 N -0.60 -13.27 1.88 -173.48 -0.33 -13.60 16 18 C 0.11 2.36 8.63 59.85 0.52 2.88 16 19 C -0.27 -7.13 9.58 -15.06 -0.14 -7.27 16 20 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 21 C 0.04 1.01 5.31 -17.43 -0.09 0.91 16 22 N -0.90 -26.28 13.97 55.49 0.78 -25.51 16 23 Si 0.89 21.71 24.94 -169.99 -4.24 17.47 16 24 H -0.29 -6.99 6.67 56.52 0.38 -6.61 16 25 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.30 6.47 -51.92 -0.34 0.97 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.42 7.96 7.69 -40.82 -0.31 7.64 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.09 7.84 -51.93 -0.41 0.69 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.79 6.67 -51.93 -0.35 0.45 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.04 1.04 3.10 -51.92 -0.16 0.88 16 45 H 0.03 0.60 6.43 -51.93 -0.33 0.27 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -30.53 373.08 -5.75 -36.28 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.39 Total: 4.81 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 0.09 Total: 7.97 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.04 Total: -59.24 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.12 Total: -12.91 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.24 Total: 17.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.53 -5.75 -36.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755320708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.409 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds