Wall clock time and date at job start Tue Mar 31 2020 10:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33700 * 126.26943 * 2 1 4 4 C 1.30617 * 108.99236 * 180.30695 * 3 2 1 5 5 C 1.50698 * 125.42221 * 179.70937 * 4 3 2 6 6 C 1.52999 * 109.47118 * 300.02199 * 5 4 3 7 7 C 1.53005 * 109.46856 * 60.02480 * 5 4 3 8 8 O 1.33671 * 109.15439 * 359.72744 * 4 3 2 9 9 C 1.35344 * 107.68509 * 0.02562 * 8 4 3 10 10 C 1.46719 * 126.64204 * 179.97438 * 9 8 4 11 11 O 1.21685 * 119.99577 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00205 * 0.29588 * 10 9 8 13 13 C 1.46505 * 120.00121 * 179.72416 * 12 10 9 14 14 C 1.52995 * 109.47085 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47667 * 64.99729 * 14 13 12 16 16 C 1.52998 * 109.47302 * 185.00414 * 14 13 12 17 17 N 1.46506 * 109.47060 * 304.99927 * 14 13 12 18 18 C 1.46499 * 119.99878 * 300.00145 * 17 14 13 19 19 C 1.36935 * 119.99825 * 120.00034 * 17 14 13 20 20 H 1.08000 * 120.00627 * 324.50969 * 19 17 14 21 21 C 1.38814 * 119.99778 * 144.51245 * 19 17 14 22 22 N 1.31623 * 120.00093 * 157.63983 * 21 19 17 23 23 Si 1.86803 * 120.00100 * 337.63451 * 21 19 17 24 24 H 1.48504 * 109.46802 * 95.57450 * 23 21 19 25 25 H 1.48496 * 109.47072 * 215.57639 * 23 21 19 26 26 H 1.48497 * 109.46874 * 335.57682 * 23 21 19 27 27 H 1.08999 * 109.47305 * 270.14682 * 1 2 3 28 28 H 1.08998 * 109.47840 * 30.15145 * 1 2 3 29 29 H 1.09008 * 109.46819 * 150.14789 * 1 2 3 30 30 H 1.09003 * 109.47318 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.47253 * 60.00343 * 6 5 4 32 32 H 1.09006 * 109.46808 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47128 * 299.99679 * 6 5 4 34 34 H 1.08998 * 109.47624 * 60.00018 * 7 5 4 35 35 H 1.09004 * 109.46509 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47240 * 299.99489 * 7 5 4 37 37 H 0.97006 * 120.00125 * 359.73153 * 12 10 9 38 38 H 1.09005 * 109.47010 * 300.00224 * 13 12 10 39 39 H 1.08996 * 109.46634 * 60.00529 * 13 12 10 40 40 H 1.09005 * 109.46986 * 299.99874 * 16 14 13 41 41 H 1.09002 * 109.47319 * 59.99101 * 16 14 13 42 42 H 1.08999 * 109.47372 * 180.02562 * 16 14 13 43 43 H 1.09007 * 109.47052 * 87.82906 * 18 17 14 44 44 H 1.09007 * 109.47026 * 207.82269 * 18 17 14 45 45 H 1.08991 * 109.47202 * 327.82368 * 18 17 14 46 46 H 0.96994 * 119.99963 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6900 -0.0066 5 6 4.7438 1.6033 -0.0151 6 6 4.7049 2.4843 -1.2654 7 6 4.7200 2.4877 1.2332 8 8 3.5889 -0.6460 -0.0050 9 6 2.3136 -1.0991 0.0023 10 6 1.8828 -2.5016 0.0060 11 8 0.6967 -2.7736 0.0122 12 7 2.8005 -3.4886 0.0079 13 6 2.3702 -4.8890 0.0177 14 6 3.5993 -5.8001 0.0186 15 1 4.1533 -5.6622 0.9472 16 6 3.1529 -7.2589 -0.0970 17 7 4.4593 -5.4611 -1.1180 18 6 3.9422 -5.5658 -2.4846 19 6 5.7465 -5.0465 -0.9028 20 1 5.9813 -4.4382 -0.0418 21 6 6.7498 -5.4080 -1.7915 22 7 7.8533 -4.6941 -1.8641 23 14 6.5340 -6.9076 -2.8842 24 1 6.0176 -6.4835 -4.2104 25 1 7.8432 -7.5868 -3.0569 26 1 5.5696 -7.8445 -2.2540 27 1 -0.3634 0.0026 1.0276 28 1 -0.3635 0.8886 -0.5162 29 1 -0.3633 -0.8914 -0.5116 30 1 5.6557 1.0060 -0.0199 31 1 3.7931 3.0817 -1.2606 32 1 5.5722 3.1446 -1.2717 33 1 4.7219 1.8542 -2.1546 34 1 4.7478 1.8601 2.1238 35 1 5.5873 3.1479 1.2272 36 1 3.8083 3.0850 1.2379 37 1 3.7460 -3.2717 0.0030 38 1 1.7759 -5.0803 0.9112 39 1 1.7689 -5.0904 -0.8688 40 1 2.5129 -7.5112 0.7486 41 1 2.5989 -7.3969 -1.0256 42 1 4.0285 -7.9081 -0.0959 43 1 3.4579 -4.6296 -2.7626 44 1 4.7655 -5.7664 -3.1703 45 1 3.2185 -6.3790 -2.5380 46 1 8.5545 -4.9469 -2.4847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755320708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:41 Heat of formation + Delta-G solvation = -24.521014 kcal Electronic energy + Delta-G solvation = -26496.830935 eV Core-core repulsion = 22808.910744 eV Total energy + Delta-G solvation = -3687.920191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.58781 -40.72113 -38.63988 -36.94277 -36.32806 -35.43245 -33.97341 -32.23067 -31.78838 -29.22594 -28.12847 -28.09499 -27.09169 -25.36550 -24.90597 -22.91308 -21.76512 -21.38026 -21.05017 -19.22712 -18.86049 -18.10906 -17.57893 -17.34645 -17.15741 -16.31357 -15.85190 -15.66515 -15.48205 -15.11330 -15.04243 -14.41531 -14.32911 -14.28140 -14.13938 -14.11103 -14.00223 -13.71378 -13.34410 -13.09884 -13.03966 -12.83726 -12.73306 -12.62203 -12.34585 -12.31728 -12.21773 -12.04356 -11.98985 -11.83001 -11.62746 -11.57975 -11.26012 -10.64139 -10.29272 -9.81850 -8.84927 -8.18953 -5.55538 -0.32306 1.25225 1.30080 1.31259 1.42655 1.52779 1.93213 2.13944 2.42758 2.75840 3.06520 3.30082 3.58629 3.58894 3.90567 3.93558 4.01473 4.10186 4.30783 4.40477 4.42773 4.47432 4.51893 4.66362 4.67291 4.75056 4.76896 4.77548 4.78477 4.81434 4.87702 4.91692 4.94093 5.00322 5.05211 5.17873 5.22237 5.27821 5.29814 5.36978 5.48544 5.91976 6.16014 6.26924 6.50996 6.90137 6.97273 7.61308 8.03061 8.99898 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.004419 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.732845 B = 6334.151991 C = 7903.941917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.076 3.924 3 N -0.495 5.495 4 C 0.228 3.772 5 C -0.008 4.008 6 C -0.138 4.138 7 C -0.136 4.136 8 O -0.198 6.198 9 C -0.145 4.145 10 C 0.604 3.396 11 O -0.544 6.544 12 N -0.697 5.697 13 C 0.114 3.886 14 C 0.154 3.846 15 H 0.073 0.927 16 C -0.154 4.154 17 N -0.613 5.613 18 C 0.111 3.889 19 C -0.253 4.253 20 H 0.053 0.947 21 C -0.020 4.020 22 N -0.945 5.945 23 Si 0.944 3.056 24 H -0.285 1.285 25 H -0.315 1.315 26 H -0.254 1.254 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.409 0.591 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.013 0.987 44 H 0.026 0.974 45 H 0.062 0.938 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.546 10.036 4.661 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.048 4.048 3 N -0.225 5.225 4 C 0.023 3.977 5 C -0.028 4.028 6 C -0.196 4.196 7 C -0.193 4.193 8 O -0.085 6.085 9 C -0.200 4.200 10 C 0.390 3.610 11 O -0.426 6.426 12 N -0.346 5.346 13 C -0.011 4.011 14 C 0.048 3.952 15 H 0.091 0.909 16 C -0.213 4.213 17 N -0.337 5.337 18 C -0.034 4.034 19 C -0.383 4.383 20 H 0.070 0.930 21 C -0.216 4.216 22 N -0.590 5.590 23 Si 0.774 3.226 24 H -0.213 1.213 25 H -0.244 1.244 26 H -0.178 1.178 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.245 0.755 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.360 10.388 4.608 16.068 hybrid contribution 1.254 -1.432 -0.815 2.071 sum -10.105 8.956 3.793 14.026 Atomic orbital electron populations 1.20404 0.83633 1.04539 1.04409 1.22511 0.99405 0.86173 0.96737 1.70302 1.00470 1.30667 1.21039 1.27509 0.96652 0.78933 0.94610 1.20140 0.89331 0.93132 1.00156 1.21836 1.04486 0.99124 0.94111 1.21825 1.04446 0.99053 0.93987 1.84539 1.29892 1.24709 1.69389 1.22980 0.81769 0.96592 1.18617 1.16400 0.85627 0.81763 0.77213 1.90779 1.16065 1.82444 1.53283 1.45931 1.10226 1.06650 1.71779 1.22003 0.97724 0.79040 1.02290 1.20900 0.89948 0.93257 0.91087 0.90895 1.22107 1.01209 0.95401 1.02598 1.44211 1.09960 1.78388 1.01186 1.21306 0.97128 0.98788 0.86147 1.18684 0.83792 1.25064 1.10738 0.92975 1.25985 0.95119 0.99855 1.00684 1.69981 1.09820 1.39445 1.39715 0.85889 0.75559 0.82343 0.78811 1.21251 1.24423 1.17784 0.88888 0.88903 0.89612 0.87529 0.91428 0.87991 0.93399 0.92820 0.88045 0.91517 0.75511 0.89647 0.91780 0.89838 0.92429 0.93507 0.96859 0.95551 0.91972 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.79 9.87 71.23 0.70 -1.09 16 2 C 0.08 2.37 7.16 41.83 0.30 2.67 16 3 N -0.50 -14.80 11.26 -291.05 -3.28 -18.07 16 4 C 0.23 6.67 6.82 88.29 0.60 7.27 16 5 C -0.01 -0.17 3.39 -11.54 -0.04 -0.21 16 6 C -0.14 -2.43 9.18 71.98 0.66 -1.77 16 7 C -0.14 -2.19 9.18 71.98 0.66 -1.53 16 8 O -0.20 -6.90 10.57 -7.15 -0.08 -6.98 16 9 C -0.15 -5.02 7.18 24.04 0.17 -4.85 16 10 C 0.60 21.53 7.79 86.46 0.67 22.21 16 11 O -0.54 -20.05 14.80 -4.30 -0.06 -20.12 16 12 N -0.70 -24.64 5.38 -467.05 -2.51 -27.15 16 13 C 0.11 3.60 4.97 86.38 0.43 4.03 16 14 C 0.15 5.31 2.88 44.99 0.13 5.44 16 15 H 0.07 2.60 7.89 -2.39 -0.02 2.58 16 16 C -0.15 -4.44 9.17 71.98 0.66 -3.78 16 17 N -0.61 -26.36 1.88 -702.77 -1.32 -27.68 16 18 C 0.11 4.52 8.63 127.77 1.10 5.62 16 19 C -0.25 -13.30 9.58 84.03 0.81 -12.49 16 20 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 21 C -0.02 -1.10 5.31 84.86 0.45 -0.65 16 22 N -0.95 -56.96 13.97 21.65 0.30 -56.65 16 23 Si 0.94 44.99 24.94 68.60 1.71 46.70 16 24 H -0.28 -13.25 6.67 99.48 0.66 -12.58 16 25 H -0.31 -15.46 7.11 99.48 0.71 -14.76 16 26 H -0.25 -11.33 7.11 99.48 0.71 -10.62 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.09 2.29 6.47 -2.38 -0.02 2.27 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.41 15.92 7.69 -92.70 -0.71 15.21 16 38 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.06 2.04 7.84 -2.39 -0.02 2.03 16 40 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.06 1.59 6.67 -2.39 -0.02 1.57 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.03 1.18 3.10 -2.38 -0.01 1.17 16 45 H 0.06 2.16 6.43 -2.39 -0.02 2.14 16 46 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -66.41 373.08 2.30 -64.11 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.23 Total: 24.97 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 7.31 Total: 20.87 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -6.81 Total: -129.56 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.14 Total: -27.09 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.71 Total: 46.70 kcal Total: -66.41 2.30 -64.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755320708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.588 kcal (2) G-P(sol) polarization free energy of solvation -66.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds