Wall clock time and date at job start Tue Mar 31 2020 10:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 C 1.50699 * 109.47090 * 119.99733 * 2 1 3 5 5 H 1.07997 * 119.99822 * 121.34622 * 4 2 1 6 6 C 1.37881 * 120.00201 * 301.34465 * 4 2 1 7 7 N 1.31507 * 119.99986 * 193.97486 * 6 4 2 8 8 Si 1.86800 * 119.99662 * 13.97897 * 6 4 2 9 9 H 1.48505 * 109.47263 * 84.54893 * 8 6 4 10 10 H 1.48506 * 109.47017 * 204.54648 * 8 6 4 11 11 H 1.48496 * 109.47234 * 324.54554 * 8 6 4 12 12 C 1.52999 * 109.47028 * 239.99683 * 2 1 3 13 13 N 1.46502 * 109.46960 * 60.00001 * 12 2 1 14 14 C 1.34771 * 119.99946 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00142 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00294 * 180.02562 * 14 13 12 17 17 C 1.47174 * 126.24859 * 0.02562 * 16 14 13 18 18 C 1.53896 * 106.13942 * 180.72361 * 17 16 14 19 19 N 1.47585 * 104.91174 * 17.40604 * 18 17 16 20 20 C 1.34770 * 127.39747 * 151.22898 * 19 18 17 21 21 O 1.21285 * 120.00058 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00371 * 180.02562 * 20 19 18 23 23 C 1.52997 * 117.49777 * 248.62364 * 22 20 19 24 24 C 1.52992 * 59.99927 * 252.50872 * 23 22 20 25 25 C 1.46956 * 126.25494 * 179.71479 * 16 14 13 26 26 H 1.08995 * 109.47426 * 59.99915 * 1 2 3 27 27 H 1.08998 * 109.47610 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47067 * 300.00208 * 1 2 3 29 29 H 1.08998 * 109.47800 * 69.36670 * 3 2 1 30 30 H 1.09004 * 109.47279 * 189.36986 * 3 2 1 31 31 H 1.09006 * 109.47171 * 309.36288 * 3 2 1 32 32 H 0.97011 * 119.99850 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47173 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.46816 * 300.00353 * 12 2 1 35 35 H 0.97000 * 120.00125 * 359.97438 * 13 12 2 36 36 H 1.08995 * 110.11995 * 299.89135 * 17 16 14 37 37 H 1.09005 * 110.11776 * 61.56231 * 17 16 14 38 38 H 1.09003 * 110.34712 * 136.26082 * 18 17 16 39 39 H 1.08997 * 110.35195 * 258.43786 * 18 17 16 40 40 H 1.09002 * 115.54391 * 34.32625 * 22 20 19 41 41 H 1.09002 * 117.50376 * 0.02562 * 23 22 20 42 42 H 1.08999 * 117.49700 * 145.01842 * 23 22 20 43 43 H 1.09006 * 117.49629 * 252.51331 * 24 23 22 44 44 H 1.09002 * 117.51913 * 107.48186 * 24 23 22 45 45 H 1.09001 * 109.90386 * 280.50535 * 25 16 14 46 46 H 1.08998 * 109.90559 * 41.75983 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6711 -1.5756 1.1316 6 6 1.6766 -0.2557 2.4826 7 7 2.3184 -0.6877 3.5460 8 14 0.2827 0.9740 2.6684 9 1 -1.0136 0.2507 2.7084 10 1 0.4620 1.7387 3.9288 11 1 0.2918 1.9104 1.5158 12 6 2.0400 -0.7213 -1.2492 13 7 1.5516 -0.0307 -2.4454 14 6 1.8776 -0.4909 -3.6694 15 8 2.5766 -1.4795 -3.7810 16 7 1.4288 0.1446 -4.7699 17 6 0.5797 1.3464 -4.7953 18 6 0.3326 1.6643 -6.2806 19 7 0.6772 0.4212 -6.9975 20 6 0.1669 -0.0190 -8.1646 21 8 -0.6751 0.6346 -8.7432 22 6 0.6425 -1.3233 -8.7509 23 6 1.4674 -1.2603 -10.0379 24 6 0.0248 -1.7683 -10.0780 25 6 1.7031 -0.2321 -6.1636 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8197 1.9058 0.9617 30 1 3.1171 1.4471 -0.1673 31 1 1.5466 2.0023 -0.7946 32 1 2.0678 -0.3681 4.4269 33 1 3.1299 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2491 35 1 0.9937 0.7577 -2.3564 36 1 -0.3664 1.1478 -4.2919 37 1 1.0936 2.1788 -4.3143 38 1 -0.7146 1.9186 -6.4446 39 1 0.9760 2.4820 -6.6055 40 1 0.8953 -2.0991 -8.0281 41 1 1.6666 -0.2754 -10.4604 42 1 2.2632 -1.9947 -10.1620 43 1 -0.1284 -2.8370 -10.2286 44 1 -0.7259 -1.1178 -10.5269 45 1 2.6955 0.1135 -6.4530 46 1 1.6369 -1.3143 -6.2754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333626310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:26 Heat of formation + Delta-G solvation = 0.000842 kcal Electronic energy + Delta-G solvation = -26019.663279 eV Core-core repulsion = 22332.806435 eV Total energy + Delta-G solvation = -3686.856844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87581 -39.74546 -38.00378 -36.72599 -36.30118 -33.77512 -32.97477 -31.44469 -30.45449 -27.04529 -26.43298 -25.61253 -25.04700 -24.18057 -22.86374 -22.62982 -20.16114 -19.67629 -19.31998 -18.37573 -17.37330 -16.95533 -16.19482 -15.97904 -15.70100 -15.44876 -15.23685 -14.96495 -14.28412 -14.11234 -13.98207 -13.49988 -13.45966 -13.09233 -12.94797 -12.74599 -12.65492 -12.40588 -12.25173 -12.18403 -12.08985 -11.94342 -11.36367 -11.03657 -10.93173 -10.47894 -10.38321 -10.33762 -10.21623 -10.11354 -10.02610 -9.37242 -9.18139 -8.96344 -8.73097 -8.53442 -8.43349 -6.18082 -4.15618 1.98486 2.16925 2.77990 3.20772 3.27727 3.30691 3.35918 3.45324 3.89400 4.10778 4.29910 4.32108 4.37609 4.48109 4.60380 4.66213 4.72343 5.08544 5.12476 5.18444 5.20188 5.20964 5.36630 5.42767 5.52147 5.54733 5.69425 5.72834 5.99000 6.01584 6.03024 6.29660 6.38267 6.47583 6.56028 6.65194 6.72919 6.81185 6.92616 7.16377 7.18795 7.38250 7.68188 7.69484 8.07553 8.41513 8.71116 8.87527 9.45544 10.94931 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.002742 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.932506 B =10208.279654 C =10637.040130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.029 3.971 3 C -0.141 4.141 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.250 1.250 12 C 0.159 3.841 13 N -0.731 5.731 14 C 0.727 3.273 15 O -0.585 6.585 16 N -0.650 5.650 17 C 0.088 3.912 18 C 0.099 3.901 19 N -0.626 5.626 20 C 0.574 3.426 21 O -0.535 6.535 22 C -0.197 4.197 23 C -0.149 4.149 24 C -0.146 4.146 25 C 0.353 3.647 26 H 0.027 0.973 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.020 0.980 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.393 0.607 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 4.094 -23.373 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.028 3.972 3 C -0.199 4.199 4 C -0.551 4.551 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.037 3.963 13 N -0.385 5.385 14 C 0.429 3.571 15 O -0.463 6.463 16 N -0.393 5.393 17 C -0.037 4.037 18 C -0.024 4.024 19 N -0.362 5.362 20 C 0.364 3.636 21 O -0.411 6.411 22 C -0.217 4.217 23 C -0.187 4.187 24 C -0.183 4.183 25 C 0.144 3.856 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.537 3.602 -23.530 24.065 hybrid contribution -1.111 1.075 0.617 1.664 sum -4.648 4.677 -22.913 23.843 Atomic orbital electron populations 1.22358 0.98711 1.00858 0.98473 1.18731 0.91644 0.93158 0.93697 1.22293 1.00176 0.97500 0.99908 1.20696 1.31664 1.14868 0.87895 0.90448 1.24968 0.96096 0.95855 0.95785 1.69948 1.39189 1.44774 0.98739 0.87298 0.82785 0.82113 0.75993 1.21354 1.23387 1.17562 1.21457 0.98629 0.95434 0.80814 1.45516 1.55499 1.33120 1.04373 1.15311 0.80271 0.82152 0.79402 1.90938 1.42866 1.27159 1.85311 1.47628 1.55753 1.30854 1.05098 1.22324 0.95870 0.88792 0.96669 1.22384 1.03150 0.87524 0.89296 1.48705 1.42044 1.23410 1.22045 1.19250 0.80073 0.85779 0.78525 1.90719 1.32119 1.58257 1.59966 1.22197 1.09083 0.97240 0.93224 1.22965 0.95167 1.03744 0.96783 1.22984 0.96612 1.02310 0.96412 1.21335 0.89899 0.97765 0.76590 0.95358 0.92734 0.94016 0.92490 0.93323 0.96105 0.92518 0.91800 0.91971 0.77206 0.90486 0.89802 0.88699 0.90023 0.85431 0.88161 0.87436 0.87642 0.87365 0.90303 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.14 -2.77 7.53 37.15 0.28 -2.49 16 4 C -0.51 -13.48 8.62 -34.44 -0.30 -13.78 16 5 H 0.08 2.23 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 8 Si 0.89 20.68 22.79 -169.99 -3.87 16.81 16 9 H -0.29 -6.68 7.10 56.52 0.40 -6.28 16 10 H -0.31 -7.33 7.11 56.52 0.40 -6.92 16 11 H -0.25 -5.26 4.65 56.52 0.26 -5.00 16 12 C 0.16 3.09 4.49 -4.04 -0.02 3.07 16 13 N -0.73 -11.62 4.97 -65.23 -0.32 -11.95 16 14 C 0.73 11.66 8.51 -86.93 -0.74 10.92 16 15 O -0.59 -11.54 16.69 5.29 0.09 -11.45 16 16 N -0.65 -7.83 3.35 -181.16 -0.61 -8.44 16 17 C 0.09 0.77 6.41 -3.21 -0.02 0.75 16 18 C 0.10 0.83 7.08 -2.98 -0.02 0.81 16 19 N -0.63 -6.19 3.37 -174.92 -0.59 -6.78 16 20 C 0.57 6.26 7.68 -10.99 -0.08 6.18 16 21 O -0.53 -7.45 16.60 5.55 0.09 -7.36 16 22 C -0.20 -1.61 5.59 -91.77 -0.51 -2.13 16 23 C -0.15 -0.96 10.23 -26.74 -0.27 -1.23 16 24 C -0.15 -1.04 10.04 -26.74 -0.27 -1.31 16 25 C 0.35 3.62 6.96 -62.20 -0.43 3.18 16 26 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 29 H 0.06 1.20 4.30 -51.93 -0.22 0.97 16 30 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.02 0.33 7.13 -51.93 -0.37 -0.04 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.39 5.44 5.29 -40.82 -0.22 5.22 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.79 8.04 -51.93 -0.42 0.37 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.13 0.93 7.10 -51.93 -0.37 0.56 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.92 6.92 -51.93 -0.36 0.56 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -32.90 358.47 -8.49 -41.39 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.17 Total: 3.96 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.28 Total: 3.87 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.75 Total: -52.62 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -3.87 Total: 16.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.90 -8.49 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333626310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.395 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds