Wall clock time and date at job start Tue Mar 31 2020 10:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 C 1.50699 * 109.47090 * 119.99733 * 2 1 3 5 5 H 1.07997 * 119.99822 * 121.34622 * 4 2 1 6 6 C 1.37881 * 120.00201 * 301.34465 * 4 2 1 7 7 N 1.31507 * 119.99986 * 193.97486 * 6 4 2 8 8 Si 1.86800 * 119.99662 * 13.97897 * 6 4 2 9 9 H 1.48505 * 109.47263 * 84.54893 * 8 6 4 10 10 H 1.48506 * 109.47017 * 204.54648 * 8 6 4 11 11 H 1.48496 * 109.47234 * 324.54554 * 8 6 4 12 12 C 1.52999 * 109.47028 * 239.99683 * 2 1 3 13 13 N 1.46502 * 109.46960 * 60.00001 * 12 2 1 14 14 C 1.34771 * 119.99946 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00142 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00294 * 180.02562 * 14 13 12 17 17 C 1.47174 * 126.24859 * 0.02562 * 16 14 13 18 18 C 1.53896 * 106.13942 * 180.72361 * 17 16 14 19 19 N 1.47585 * 104.91174 * 17.40604 * 18 17 16 20 20 C 1.34770 * 127.39747 * 151.22898 * 19 18 17 21 21 O 1.21285 * 120.00058 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00371 * 180.02562 * 20 19 18 23 23 C 1.52997 * 117.49777 * 248.62364 * 22 20 19 24 24 C 1.52992 * 59.99927 * 252.50872 * 23 22 20 25 25 C 1.46956 * 126.25494 * 179.71479 * 16 14 13 26 26 H 1.08995 * 109.47426 * 59.99915 * 1 2 3 27 27 H 1.08998 * 109.47610 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47067 * 300.00208 * 1 2 3 29 29 H 1.08998 * 109.47800 * 69.36670 * 3 2 1 30 30 H 1.09004 * 109.47279 * 189.36986 * 3 2 1 31 31 H 1.09006 * 109.47171 * 309.36288 * 3 2 1 32 32 H 0.97011 * 119.99850 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47173 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.46816 * 300.00353 * 12 2 1 35 35 H 0.97000 * 120.00125 * 359.97438 * 13 12 2 36 36 H 1.08995 * 110.11995 * 299.89135 * 17 16 14 37 37 H 1.09005 * 110.11776 * 61.56231 * 17 16 14 38 38 H 1.09003 * 110.34712 * 136.26082 * 18 17 16 39 39 H 1.08997 * 110.35195 * 258.43786 * 18 17 16 40 40 H 1.09002 * 115.54391 * 34.32625 * 22 20 19 41 41 H 1.09002 * 117.50376 * 0.02562 * 23 22 20 42 42 H 1.08999 * 117.49700 * 145.01842 * 23 22 20 43 43 H 1.09006 * 117.49629 * 252.51331 * 24 23 22 44 44 H 1.09002 * 117.51913 * 107.48186 * 24 23 22 45 45 H 1.09001 * 109.90386 * 280.50535 * 25 16 14 46 46 H 1.08998 * 109.90559 * 41.75983 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6711 -1.5756 1.1316 6 6 1.6766 -0.2557 2.4826 7 7 2.3184 -0.6877 3.5460 8 14 0.2827 0.9740 2.6684 9 1 -1.0136 0.2507 2.7084 10 1 0.4620 1.7387 3.9288 11 1 0.2918 1.9104 1.5158 12 6 2.0400 -0.7213 -1.2492 13 7 1.5516 -0.0307 -2.4454 14 6 1.8776 -0.4909 -3.6694 15 8 2.5766 -1.4795 -3.7810 16 7 1.4288 0.1446 -4.7699 17 6 0.5797 1.3464 -4.7953 18 6 0.3326 1.6643 -6.2806 19 7 0.6772 0.4212 -6.9975 20 6 0.1669 -0.0190 -8.1646 21 8 -0.6751 0.6346 -8.7432 22 6 0.6425 -1.3233 -8.7509 23 6 1.4674 -1.2603 -10.0379 24 6 0.0248 -1.7683 -10.0780 25 6 1.7031 -0.2321 -6.1636 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8197 1.9058 0.9617 30 1 3.1171 1.4471 -0.1673 31 1 1.5466 2.0023 -0.7946 32 1 2.0678 -0.3681 4.4269 33 1 3.1299 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2491 35 1 0.9937 0.7577 -2.3564 36 1 -0.3664 1.1478 -4.2919 37 1 1.0936 2.1788 -4.3143 38 1 -0.7146 1.9186 -6.4446 39 1 0.9760 2.4820 -6.6055 40 1 0.8953 -2.0991 -8.0281 41 1 1.6666 -0.2754 -10.4604 42 1 2.2632 -1.9947 -10.1620 43 1 -0.1284 -2.8370 -10.2286 44 1 -0.7259 -1.1178 -10.5269 45 1 2.6955 0.1135 -6.4530 46 1 1.6369 -1.3143 -6.2754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333626310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:25 Heat of formation + Delta-G solvation = -22.998788 kcal Electronic energy + Delta-G solvation = -26020.660617 eV Core-core repulsion = 22332.806435 eV Total energy + Delta-G solvation = -3687.854182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.79809 -40.80690 -39.07677 -38.17426 -37.02451 -35.14418 -34.29609 -33.21154 -31.21568 -28.25375 -27.97580 -27.12763 -26.43004 -25.29449 -23.45682 -23.27452 -21.38658 -20.94732 -20.43729 -19.43074 -18.32048 -18.04312 -17.79810 -17.21825 -16.83133 -16.70524 -16.37593 -15.90129 -15.43659 -15.25550 -14.93377 -14.83954 -14.58858 -14.50002 -14.25103 -14.04501 -13.93818 -13.74487 -13.48202 -13.17520 -13.01068 -12.82798 -12.45148 -12.37675 -12.13476 -11.94422 -11.75088 -11.61938 -11.50604 -11.45049 -11.12804 -11.04059 -10.60527 -10.38893 -10.27259 -10.09062 -9.59857 -8.28480 -6.30061 1.08447 1.34452 1.37859 1.39321 1.52363 1.88464 2.08154 2.36233 2.85813 2.97848 3.08118 3.21646 3.57028 3.78731 3.90383 3.96604 3.99841 4.07034 4.09210 4.35009 4.38013 4.42373 4.42628 4.57412 4.72646 4.73522 4.75901 4.82782 4.85018 4.86878 4.88242 4.96435 5.00335 5.07687 5.18958 5.20228 5.22859 5.42473 5.55461 5.72936 5.80313 5.82725 6.26689 6.32958 6.74331 6.85577 6.94300 7.34654 7.48135 8.88635 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.002742 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.932506 B =10208.279654 C =10637.040130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.029 3.971 3 C -0.140 4.140 4 C -0.516 4.516 5 H 0.029 0.971 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.944 3.056 9 H -0.284 1.284 10 H -0.317 1.317 11 H -0.201 1.201 12 C 0.177 3.823 13 N -0.720 5.720 14 C 0.728 3.272 15 O -0.628 6.628 16 N -0.646 5.646 17 C 0.085 3.915 18 C 0.098 3.902 19 N -0.625 5.625 20 C 0.570 3.430 21 O -0.571 6.571 22 C -0.210 4.210 23 C -0.135 4.135 24 C -0.147 4.147 25 C 0.354 3.646 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.408 0.592 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.096 0.904 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 6.269 -25.604 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 C -0.197 4.197 4 C -0.555 4.555 5 H 0.047 0.953 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.211 1.211 10 H -0.247 1.247 11 H -0.125 1.125 12 C 0.052 3.948 13 N -0.375 5.375 14 C 0.430 3.570 15 O -0.509 6.509 16 N -0.387 5.387 17 C -0.038 4.038 18 C -0.024 4.024 19 N -0.360 5.360 20 C 0.361 3.639 21 O -0.450 6.450 22 C -0.231 4.231 23 C -0.172 4.172 24 C -0.185 4.185 25 C 0.145 3.855 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.245 0.755 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.155 0.845 41 H 0.114 0.886 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.937 5.826 -25.822 26.927 hybrid contribution -0.607 0.313 1.232 1.408 sum -5.544 6.139 -24.590 25.944 Atomic orbital electron populations 1.22292 0.96758 1.01109 1.00173 1.18656 0.93087 0.93838 0.91695 1.22210 1.00426 0.96232 1.00867 1.21021 1.30385 1.13586 0.90476 0.95261 1.25855 0.98634 0.98374 0.95244 1.70114 1.41597 1.47446 0.99413 0.86355 0.78871 0.80458 0.76993 1.21101 1.24669 1.12497 1.20942 0.97295 0.94663 0.81866 1.45098 1.55725 1.33337 1.03386 1.15302 0.79975 0.81770 0.79997 1.90916 1.44762 1.29168 1.86026 1.47495 1.55284 1.31312 1.04652 1.22592 0.95947 0.88002 0.97251 1.22528 1.03674 0.87394 0.88839 1.48729 1.41691 1.23823 1.21729 1.19699 0.79466 0.86254 0.78484 1.90699 1.33777 1.59534 1.60989 1.22263 1.10551 0.96297 0.93982 1.23065 0.95289 1.04069 0.94768 1.23043 0.96819 1.03127 0.95486 1.21426 0.90535 0.97812 0.75746 0.90910 0.93553 0.94712 0.93677 0.93900 0.91537 0.92714 0.93863 0.93985 0.75503 0.89598 0.87421 0.88667 0.88263 0.84519 0.88583 0.85266 0.85767 0.88952 0.88820 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 7.52 71.98 0.54 -4.71 16 2 C 0.03 1.16 0.50 -52.93 -0.03 1.13 16 3 C -0.14 -5.01 7.53 71.98 0.54 -4.47 16 4 C -0.52 -27.81 8.62 25.60 0.22 -27.59 16 5 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 6 C 0.02 0.91 5.32 84.66 0.45 1.36 16 7 N -0.95 -58.02 13.96 21.45 0.30 -57.72 16 8 Si 0.94 41.73 22.79 68.60 1.56 43.29 16 9 H -0.28 -12.37 7.10 99.48 0.71 -11.66 16 10 H -0.32 -14.57 7.11 99.48 0.71 -13.87 16 11 H -0.20 -7.37 4.65 99.48 0.46 -6.91 16 12 C 0.18 6.75 4.49 86.38 0.39 7.14 16 13 N -0.72 -20.90 4.97 -478.55 -2.38 -23.28 16 14 C 0.73 21.86 8.51 179.06 1.52 23.39 16 15 O -0.63 -24.41 16.69 -3.99 -0.07 -24.47 16 16 N -0.65 -13.67 3.35 -845.32 -2.83 -16.50 16 17 C 0.08 1.14 6.41 86.55 0.56 1.70 16 18 C 0.10 1.32 7.08 86.47 0.61 1.93 16 19 N -0.62 -10.95 3.37 -825.72 -2.78 -13.74 16 20 C 0.57 11.66 7.68 87.66 0.67 12.33 16 21 O -0.57 -15.49 16.60 -3.05 -0.05 -15.54 16 22 C -0.21 -3.12 5.59 -11.54 -0.06 -3.19 16 23 C -0.13 -1.46 10.23 30.59 0.31 -1.15 16 24 C -0.15 -1.90 10.04 30.59 0.31 -1.59 16 25 C 0.35 6.41 6.96 170.42 1.19 7.59 16 26 H 0.07 1.96 6.86 -2.39 -0.02 1.94 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.03 1.30 2.25 -2.38 -0.01 1.30 16 29 H 0.04 1.72 4.30 -2.39 -0.01 1.71 16 30 H 0.04 1.57 8.12 -2.39 -0.02 1.55 16 31 H 0.07 1.77 7.13 -2.38 -0.02 1.76 16 32 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.41 9.30 5.29 -92.71 -0.49 8.81 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.09 1.33 8.04 -2.39 -0.02 1.31 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.14 1.76 7.10 -2.39 -0.02 1.74 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.09 1.50 7.67 -2.39 -0.02 1.48 16 45 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 46 H 0.08 1.62 6.92 -2.39 -0.02 1.60 16 Total: -1.00 -75.50 358.47 1.23 -74.26 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.26 Total: 19.83 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 7.22 Total: 13.87 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -7.70 Total: -111.24 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.12 Total: -40.02 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.56 Total: 43.29 kcal Total: -75.50 1.23 -74.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333626310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.266 kcal (2) G-P(sol) polarization free energy of solvation -75.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds