Wall clock time and date at job start Tue Mar 31 2020 10:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99587 * 2 1 4 4 N 1.46502 * 109.46676 * 125.00352 * 3 2 1 5 5 C 1.34770 * 119.99913 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99884 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00237 * 179.97438 * 5 4 3 8 8 N 1.46498 * 109.47096 * 179.97438 * 7 5 4 9 9 C 1.34782 * 119.99675 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00071 * 4.97931 * 9 8 7 11 11 N 1.34774 * 119.99915 * 184.98301 * 9 8 7 12 12 C 1.46926 * 120.63121 * 174.77166 * 11 9 8 13 13 C 1.53195 * 108.89465 * 126.33965 * 12 11 9 14 14 C 1.53354 * 109.14570 * 54.57617 * 13 12 11 15 15 C 1.52998 * 109.41339 * 178.67370 * 14 13 12 16 16 C 1.50701 * 109.47671 * 295.12915 * 15 14 13 17 17 H 1.08004 * 119.99565 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00388 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99835 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99969 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47356 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47092 * 120.00040 * 20 18 16 23 23 H 1.48501 * 109.47018 * 239.99929 * 20 18 16 24 24 C 1.53040 * 109.60905 * 298.70899 * 14 13 12 25 25 C 1.46926 * 120.63157 * 354.78914 * 11 9 8 26 26 H 1.08001 * 120.00038 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.00405 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00041 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47185 * 4.99935 * 3 2 1 30 30 H 1.08997 * 109.46992 * 244.99549 * 3 2 1 31 31 H 0.97006 * 120.00139 * 359.97438 * 4 3 2 32 32 H 1.09007 * 109.46781 * 60.00074 * 7 5 4 33 33 H 1.08998 * 109.47255 * 300.00439 * 7 5 4 34 34 H 0.96993 * 120.00686 * 359.97438 * 8 7 5 35 35 H 1.08999 * 109.58363 * 246.19988 * 12 11 9 36 36 H 1.09002 * 109.58625 * 6.48116 * 12 11 9 37 37 H 1.08997 * 109.49623 * 174.65400 * 13 12 11 38 38 H 1.09002 * 109.49577 * 294.75334 * 13 12 11 39 39 H 1.08994 * 109.42367 * 58.75582 * 14 13 12 40 40 H 1.09006 * 109.47442 * 55.13246 * 15 14 13 41 41 H 1.09001 * 109.47043 * 175.12891 * 15 14 13 42 42 H 0.97001 * 119.99599 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.50186 * 301.42491 * 24 14 13 44 44 H 1.09004 * 109.52060 * 181.34332 * 24 14 13 45 45 H 1.09010 * 109.58451 * 353.37613 * 25 11 9 46 46 H 1.08999 * 109.58904 * 113.65827 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7782 2.4090 1.3335 6 8 3.7142 3.3560 0.5784 7 6 4.7348 2.4368 2.4977 8 7 5.4672 3.7055 2.4976 9 6 6.3841 3.9543 3.4538 10 8 6.6687 3.0920 4.2622 11 7 6.9852 5.1591 3.5137 12 6 7.9006 5.4849 4.6159 13 6 9.2345 5.9580 4.0296 14 6 8.9748 7.1177 3.0604 15 6 10.3065 7.6169 2.4962 16 6 11.1364 8.2018 3.6099 17 1 10.7521 8.2164 4.6192 18 6 12.3856 8.7191 3.3402 19 7 12.8532 8.7017 2.1112 20 14 13.4139 9.4447 4.7206 21 1 12.6663 9.3450 5.9999 22 1 14.6909 8.6951 4.8332 23 1 13.7017 10.8715 4.4261 24 6 8.0826 6.6383 1.9131 25 6 6.7375 6.1717 2.4784 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4027 -0.9313 31 1 3.0446 0.5747 1.7356 32 1 5.4400 1.6105 2.4082 33 1 4.1768 2.3390 3.4289 34 1 5.2930 4.3662 1.8092 35 1 7.4687 6.2772 5.2274 36 1 8.0647 4.5986 5.2288 37 1 9.8879 6.2922 4.8354 38 1 9.7083 5.1356 3.4936 39 1 8.4784 7.9298 3.5916 40 1 10.8435 6.7843 2.0417 41 1 10.1180 8.3821 1.7431 42 1 13.7319 9.0660 1.9214 43 1 8.5675 5.8098 1.3969 44 1 7.9186 7.4573 1.2126 45 1 6.1361 5.7378 1.6794 46 1 6.2086 7.0189 2.9150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570040021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:20 Heat of formation + Delta-G solvation = -53.167447 kcal Electronic energy + Delta-G solvation = -25071.636720 eV Core-core repulsion = 21382.474326 eV Total energy + Delta-G solvation = -3689.162394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.60572 -39.77237 -37.44617 -36.36089 -34.53819 -33.93597 -33.32976 -32.05089 -30.70082 -28.92276 -27.68503 -25.80745 -24.46955 -22.69939 -21.89662 -21.22019 -20.52731 -20.06631 -19.33925 -18.19079 -17.04683 -16.78905 -16.36754 -16.24766 -15.94535 -15.42016 -15.10470 -14.50557 -14.38443 -14.10552 -14.01456 -13.68924 -13.48391 -13.31727 -13.04065 -12.95362 -12.79689 -12.44997 -12.08382 -11.83916 -11.73993 -11.16863 -10.98283 -10.71458 -10.66976 -10.60112 -10.38270 -10.17583 -10.11407 -9.94550 -9.58873 -9.57270 -9.27423 -9.18888 -8.92710 -8.33027 -8.22073 -5.97391 -3.98945 1.47723 2.14871 2.47341 3.04924 3.28040 3.32653 3.40509 3.44044 3.96668 4.16951 4.32044 4.48031 4.50540 4.97274 5.05364 5.09791 5.11533 5.20765 5.27073 5.37704 5.39964 5.44190 5.65353 5.71488 5.79706 5.86817 5.94144 6.03331 6.09151 6.13838 6.28811 6.38191 6.42870 6.54504 6.68493 6.95369 7.00558 7.05809 7.12034 7.17366 7.68398 7.69806 7.84422 8.01533 8.02660 8.45486 8.65739 9.07780 9.64852 11.13948 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.038179 B = 0.002122 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.211896 B =13194.079220 C =13626.300855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.146 3.854 4 N -0.725 5.725 5 C 0.510 3.490 6 O -0.534 6.534 7 C 0.122 3.878 8 N -0.742 5.742 9 C 0.711 3.289 10 O -0.598 6.598 11 N -0.619 5.619 12 C 0.126 3.874 13 C -0.118 4.118 14 C -0.080 4.080 15 C 0.027 3.973 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.130 4.130 25 C 0.111 3.889 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.405 0.595 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.407 0.593 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.009 -16.273 -2.601 29.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.378 5.378 5 C 0.296 3.704 6 O -0.410 6.410 7 C -0.007 4.007 8 N -0.404 5.404 9 C 0.412 3.588 10 O -0.477 6.477 11 N -0.356 5.356 12 C 0.004 3.996 13 C -0.156 4.156 14 C -0.099 4.099 15 C -0.010 4.010 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.168 4.168 25 C -0.012 4.012 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.240 0.760 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.709 -16.136 -2.661 28.802 hybrid contribution 0.585 0.325 0.449 0.805 sum -23.124 -15.811 -2.212 28.100 Atomic orbital electron populations 1.24015 0.95787 1.02559 0.97744 1.22998 0.96259 0.98057 1.02406 1.20446 0.91758 0.95765 0.89707 1.45861 1.40943 1.19935 1.31055 1.20683 0.80960 0.82432 0.86348 1.90724 1.67942 1.35276 1.47097 1.20793 0.94402 0.88637 0.96828 1.44931 1.42838 1.20020 1.32598 1.15691 0.79089 0.82726 0.81271 1.90883 1.67815 1.45152 1.43883 1.47322 1.47693 1.12858 1.27683 1.21685 0.89643 1.00696 0.87609 1.21966 0.94921 0.98415 1.00345 1.21238 0.98141 0.96113 0.94400 1.19135 0.89831 0.95963 0.96093 1.21287 1.00820 1.38501 0.94665 0.92493 1.25025 0.97945 0.96221 0.95351 1.69977 1.18328 1.46502 1.18737 0.86584 0.80353 0.78793 0.82546 1.19733 1.21118 1.21149 1.22024 0.94511 1.01046 0.99198 1.21732 0.98344 0.91258 0.89856 0.87759 0.88099 0.86513 0.90835 0.90357 0.75989 0.88400 0.88576 0.75244 0.92013 0.89537 0.89730 0.92347 0.92321 0.96634 0.96622 0.93157 0.91998 0.91048 0.91253 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 14.32 29.01 0.42 -0.17 16 2 C -0.18 -0.72 9.63 -36.02 -0.35 -1.07 16 3 C 0.15 0.87 6.11 -5.19 -0.03 0.84 16 4 N -0.73 -4.43 5.55 -61.47 -0.34 -4.77 16 5 C 0.51 4.74 7.90 -10.99 -0.09 4.65 16 6 O -0.53 -6.88 15.67 5.55 0.09 -6.80 16 7 C 0.12 1.16 6.16 -5.19 -0.03 1.13 16 8 N -0.74 -9.39 5.44 -66.41 -0.36 -9.75 16 9 C 0.71 11.22 8.29 -86.91 -0.72 10.50 16 10 O -0.60 -11.08 15.77 5.29 0.08 -10.99 16 11 N -0.62 -9.58 2.97 -178.49 -0.53 -10.11 16 12 C 0.13 2.04 6.43 -3.71 -0.02 2.01 16 13 C -0.12 -2.20 5.21 -26.45 -0.14 -2.34 16 14 C -0.08 -1.58 2.10 -90.42 -0.19 -1.77 16 15 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 16 C -0.51 -14.15 8.39 -34.44 -0.29 -14.44 16 17 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 25 C 0.11 1.54 6.39 -3.71 -0.02 1.51 16 26 H 0.10 0.26 8.06 -52.49 -0.42 -0.16 16 27 H 0.10 0.35 7.84 -52.48 -0.41 -0.06 16 28 H 0.12 0.35 8.06 -52.49 -0.42 -0.07 16 29 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.41 1.39 8.46 -40.82 -0.35 1.05 16 32 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.41 5.05 4.93 -40.82 -0.20 4.85 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 37 H 0.08 1.66 6.93 -51.93 -0.36 1.30 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 0.84 5.65 -51.92 -0.29 0.54 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -34.41 375.38 -8.90 -43.31 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.38 Total: 2.40 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.83 Total: 0.61 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.50 Total: -50.75 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.41 -8.90 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570040021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.856 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds