Wall clock time and date at job start Tue Mar 31 2020 10:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99777 * 2 1 4 4 C 1.53000 * 109.46649 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46965 * 65.00397 * 4 3 2 6 6 C 1.46496 * 120.00068 * 266.47936 * 5 4 3 7 7 C 1.50695 * 109.47299 * 269.99875 * 6 5 4 8 8 H 1.08007 * 119.99986 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00204 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00070 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99972 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47359 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47089 * 120.00118 * 11 9 7 14 14 H 1.48506 * 109.46963 * 239.99799 * 11 9 7 15 15 C 1.34777 * 119.99712 * 86.48119 * 5 4 3 16 16 O 1.21573 * 119.99699 * 185.47680 * 15 5 4 17 17 C 1.47707 * 120.00676 * 5.47001 * 15 5 4 18 18 C 1.41501 * 126.52182 * 174.30522 * 17 15 5 19 19 C 1.35367 * 105.50022 * 179.97438 * 18 17 15 20 20 N 1.35031 * 107.23117 * 0.02562 * 19 18 17 21 21 C 1.46498 * 124.88283 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47034 * 125.02748 * 21 20 19 23 23 C 1.52996 * 109.47058 * 64.99704 * 22 21 20 24 24 C 1.52995 * 109.47384 * 185.00044 * 22 21 20 25 25 N 1.28466 * 110.23429 * 359.97438 * 20 19 18 26 26 H 1.09008 * 109.47095 * 300.00055 * 1 2 3 27 27 H 1.09005 * 109.47069 * 59.99732 * 1 2 3 28 28 H 1.08998 * 109.47489 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47227 * 60.00357 * 3 2 1 30 30 H 1.08993 * 109.47216 * 300.00069 * 3 2 1 31 31 H 1.08999 * 109.47492 * 305.00164 * 4 3 2 32 32 H 1.09001 * 109.47038 * 185.00245 * 4 3 2 33 33 H 1.09000 * 109.47197 * 30.00357 * 6 5 4 34 34 H 1.09000 * 109.47284 * 149.99793 * 6 5 4 35 35 H 0.97000 * 120.00092 * 179.97438 * 10 9 7 36 36 H 1.07997 * 127.24742 * 0.02562 * 18 17 15 37 37 H 1.08005 * 126.38247 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47357 * 245.02550 * 21 20 19 39 39 H 1.08999 * 109.47385 * 5.03041 * 21 20 19 40 40 H 1.09001 * 109.46993 * 305.00330 * 22 21 20 41 41 H 1.08995 * 109.47607 * 299.99946 * 23 22 21 42 42 H 1.09002 * 109.47222 * 60.00539 * 23 22 21 43 43 H 1.09008 * 109.47139 * 179.97438 * 23 22 21 44 44 H 1.09006 * 109.47169 * 59.99892 * 24 22 21 45 45 H 1.08998 * 109.47272 * 179.97438 * 24 22 21 46 46 H 1.09001 * 109.47290 * 300.00105 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1804 -0.8852 -1.3179 7 6 5.6049 -1.2098 -0.9489 8 1 6.2900 -0.4159 -0.6899 9 6 6.0339 -2.5201 -0.9418 10 7 5.1996 -3.4868 -1.2567 11 14 7.7995 -2.9224 -0.4836 12 1 8.5287 -1.6667 -0.1728 13 1 7.8121 -3.8103 0.7066 14 1 8.4617 -3.6102 -1.6212 15 6 4.1950 1.3263 -2.3407 16 8 4.4641 0.8030 -3.4046 17 6 4.1074 2.7975 -2.2427 18 6 4.4178 3.7294 -3.2613 19 6 4.1883 4.9482 -2.7188 20 7 3.7669 4.7490 -1.4515 21 6 3.4090 5.8133 -0.5105 22 6 1.9922 5.5740 0.0152 23 6 1.9636 4.2825 0.8348 24 6 1.5713 6.7491 0.9000 25 7 3.7249 3.4920 -1.1896 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5684 0.8427 32 1 3.9785 2.1765 0.0903 33 1 3.5029 -1.3799 -0.6219 34 1 3.9789 -1.2340 -2.3307 35 1 5.5015 -4.4086 -1.2521 36 1 4.7639 3.5136 -4.2613 37 1 4.3189 5.9021 -3.2081 38 1 4.1109 5.8122 0.3234 39 1 3.4500 6.7766 -1.0188 40 1 1.3030 5.4865 -0.8248 41 1 2.2634 3.4454 0.2045 42 1 2.6528 4.3699 1.6748 43 1 0.9543 4.1123 1.2098 44 1 1.5916 7.6692 0.3159 45 1 0.5617 6.5788 1.2741 46 1 2.2605 6.8366 1.7399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896627770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:35 Heat of formation + Delta-G solvation = 12.880202 kcal Electronic energy + Delta-G solvation = -27180.286788 eV Core-core repulsion = 23493.988436 eV Total energy + Delta-G solvation = -3686.298353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.54762 -38.71049 -37.40541 -36.62426 -34.72529 -32.73877 -31.96247 -30.64452 -29.51384 -27.74231 -27.27234 -26.38339 -25.71859 -23.57104 -22.55964 -21.38048 -21.34241 -20.46034 -18.68545 -17.26419 -16.61752 -16.34550 -15.98194 -15.80798 -15.43036 -15.09234 -14.83349 -14.53450 -14.14152 -14.02535 -13.84739 -13.47613 -13.27253 -12.91831 -12.72755 -12.58080 -12.35768 -12.20023 -12.07591 -11.75731 -11.54211 -11.38431 -11.17012 -11.11223 -10.99750 -10.84057 -10.70600 -10.37755 -10.10068 -9.86632 -9.46587 -9.30115 -9.05615 -8.96621 -8.81865 -8.28273 -7.46667 -5.89146 -3.93134 1.91765 2.43272 2.50780 3.38896 3.45675 3.50406 4.01098 4.16466 4.20038 4.25035 4.36198 4.56941 4.64793 4.78052 4.89927 5.01316 5.06364 5.20298 5.37529 5.41008 5.43878 5.45305 5.54935 5.58255 5.66955 5.69827 5.73722 5.78521 5.81471 5.89553 5.91594 5.93792 5.97653 6.13117 6.27313 6.49933 6.69159 6.95636 7.39509 7.56686 7.68573 7.74344 8.07461 8.12372 8.41020 8.60992 9.04488 9.22754 9.70595 11.18786 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.004492 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.321300 B = 6231.269830 C = 7089.451766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.051 3.949 4 C 0.102 3.898 5 N -0.573 5.573 6 C 0.248 3.752 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.585 3.415 16 O -0.536 6.536 17 C 0.001 3.999 18 C -0.182 4.182 19 C -0.024 4.024 20 N -0.292 5.292 21 C 0.125 3.875 22 C -0.106 4.106 23 C -0.178 4.178 24 C -0.145 4.145 25 N -0.263 5.263 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.261 0.739 36 H 0.159 0.841 37 H 0.176 0.824 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 22.456 4.623 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.027 4.027 4 C -0.023 4.023 5 N -0.303 5.303 6 C 0.130 3.870 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.369 3.631 16 O -0.412 6.412 17 C -0.159 4.159 18 C -0.210 4.210 19 C -0.167 4.167 20 N -0.079 5.079 21 C 0.004 3.996 22 C -0.126 4.126 23 C -0.234 4.234 24 C -0.203 4.203 25 N -0.099 5.099 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.177 0.823 37 H 0.193 0.807 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.295 21.757 5.226 24.230 hybrid contribution 0.983 0.248 -0.499 1.130 sum -8.312 22.005 4.728 23.992 Atomic orbital electron populations 1.22669 0.82398 1.02383 0.98929 1.88089 1.18443 1.27687 1.95116 1.23240 0.95534 0.84632 0.99295 1.21938 0.91236 1.00622 0.88454 1.48007 1.63113 1.10293 1.08856 1.19359 0.96333 0.72207 0.99138 1.21531 0.96363 0.92382 1.46053 0.92534 1.24909 0.97551 0.96164 0.95435 1.69962 1.34746 0.99758 1.48776 0.86484 0.84979 0.78234 0.77946 1.19888 1.21064 1.20974 1.16980 0.78478 0.82973 0.84676 1.90751 1.49609 1.72719 1.28091 1.22567 1.05885 0.95721 0.91711 1.21775 1.07497 0.90414 1.01317 1.22762 1.06739 1.00535 0.86628 1.45676 1.46906 1.04885 1.10414 1.22107 0.97842 0.87251 0.92386 1.21382 0.94667 0.97202 0.99306 1.22510 1.01580 0.98480 1.00875 1.21792 1.02016 0.96929 0.99548 1.73583 1.21088 0.90044 1.25166 0.94866 0.94808 0.89893 0.92994 0.93786 0.89759 0.87001 0.93652 0.93981 0.92945 0.82344 0.80698 0.89047 0.88281 0.90660 0.88075 0.92511 0.92941 0.92555 0.91871 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.06 9.89 -35.23 -0.35 -7.41 16 3 C 0.05 0.84 4.20 37.16 0.16 0.99 16 4 C 0.10 1.95 5.31 -4.04 -0.02 1.92 16 5 N -0.57 -13.52 2.41 -176.23 -0.42 -13.95 16 6 C 0.25 7.00 5.05 -5.20 -0.03 6.98 16 7 C -0.52 -15.66 9.39 -34.44 -0.32 -15.98 16 8 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 11 Si 0.90 22.67 29.54 -169.99 -5.02 17.65 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.58 13.75 7.65 -12.39 -0.09 13.65 16 16 O -0.54 -14.58 16.48 5.30 0.09 -14.49 16 17 C 0.00 0.02 6.85 -82.76 -0.57 -0.54 16 18 C -0.18 -2.79 10.81 -39.36 -0.43 -3.22 16 19 C -0.02 -0.27 11.40 -17.17 -0.20 -0.47 16 20 N -0.29 -3.39 3.41 -61.33 -0.21 -3.60 16 21 C 0.12 0.92 5.89 -4.04 -0.02 0.90 16 22 C -0.11 -0.80 3.11 -90.62 -0.28 -1.08 16 23 C -0.18 -1.68 7.86 37.16 0.29 -1.38 16 24 C -0.14 -0.77 9.19 37.15 0.34 -0.42 16 25 N -0.26 -3.99 5.20 33.42 0.17 -3.81 16 26 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.71 6.49 -51.93 -0.34 0.37 16 30 H 0.04 0.75 7.48 -51.93 -0.39 0.36 16 31 H 0.08 1.67 8.05 -51.93 -0.42 1.25 16 32 H 0.11 1.94 4.69 -51.93 -0.24 1.69 16 33 H 0.05 1.32 7.45 -51.93 -0.39 0.94 16 34 H 0.04 1.33 7.35 -51.93 -0.38 0.95 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.44 8.04 -51.93 -0.42 0.03 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.21 1.64 -51.93 -0.09 1.12 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -36.50 369.55 -6.87 -43.37 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.28 Total: -1.08 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.15 Total: 4.65 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.28 Total: -48.26 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.26 Total: -21.90 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.50 -6.87 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896627770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.247 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds