Wall clock time and date at job start Tue Mar 31 2020 10:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47233 * 2 1 4 4 N 1.46502 * 109.47452 * 179.97438 * 3 2 1 5 5 C 1.46761 * 124.35126 * 269.95197 * 4 3 2 6 6 C 1.54473 * 105.47323 * 197.03606 * 5 4 3 7 7 H 1.09003 * 111.00351 * 92.71951 * 6 5 4 8 8 C 1.50710 * 110.96913 * 216.46347 * 6 5 4 9 9 O 1.21280 * 119.99634 * 353.83772 * 8 6 5 10 10 N 1.34778 * 119.99959 * 173.83210 * 8 6 5 11 11 C 1.46497 * 119.99996 * 180.02562 * 10 8 6 12 12 H 1.09000 * 112.90773 * 336.25140 * 11 10 8 13 13 C 1.53777 * 113.61705 * 107.50193 * 11 10 8 14 14 C 1.53774 * 87.08381 * 139.98076 * 13 11 10 15 15 H 1.08997 * 113.69521 * 220.00978 * 14 13 11 16 16 N 1.46505 * 113.61385 * 89.11575 * 14 13 11 17 17 C 1.36931 * 119.99788 * 107.50497 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 C 1.53783 * 113.61474 * 205.00241 * 11 10 8 26 26 C 1.54625 * 101.76579 * 334.58431 * 6 5 4 27 27 C 1.34421 * 124.34712 * 89.97493 * 4 3 2 28 28 O 1.21280 * 124.94185 * 359.60580 * 27 4 3 29 29 H 1.09002 * 109.46963 * 60.00502 * 1 2 3 30 30 H 1.09004 * 109.47325 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47861 * 300.00082 * 1 2 3 32 32 H 1.09000 * 109.47861 * 239.99918 * 2 1 3 33 33 H 1.09002 * 109.46963 * 119.99498 * 2 1 3 34 34 H 1.09002 * 109.47215 * 59.99499 * 3 2 1 35 35 H 1.08998 * 109.47366 * 299.99976 * 3 2 1 36 36 H 1.09003 * 110.24495 * 78.03385 * 5 4 3 37 37 H 1.08999 * 110.24767 * 316.03972 * 5 4 3 38 38 H 0.96999 * 119.99818 * 0.02562 * 10 8 6 39 39 H 1.09001 * 113.61290 * 25.43336 * 13 11 10 40 40 H 1.09000 * 113.61684 * 254.53358 * 13 11 10 41 41 H 0.97000 * 119.99792 * 287.50291 * 16 14 13 42 42 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 43 43 H 1.08995 * 113.61832 * 105.46603 * 25 11 10 44 44 H 1.08996 * 113.68937 * 334.57509 * 25 11 10 45 45 H 1.09003 * 110.48962 * 143.48004 * 26 6 5 46 46 H 1.09008 * 110.48581 * 266.11960 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3326 1.4438 1.2126 6 6 5.7405 1.8795 0.7498 7 1 5.8666 2.9580 0.8451 8 6 6.8111 1.1445 1.5145 9 8 6.5072 0.4196 2.4382 10 7 8.1061 1.2926 1.1719 11 6 9.1468 0.5777 1.9149 12 1 8.8374 0.3069 2.9243 13 6 9.7748 -0.5862 1.1301 14 6 11.1268 -0.1502 1.7188 15 1 11.9520 -0.2056 1.0088 16 7 11.4385 -0.7816 3.0035 17 6 12.4037 -1.7503 3.0741 18 1 12.9356 -2.0486 2.1827 19 6 12.7030 -2.3445 4.2924 20 7 13.6345 -3.2717 4.3612 21 14 11.7836 -1.8281 5.8343 22 1 10.5765 -2.6772 5.9986 23 1 12.6681 -1.9909 7.0160 24 1 11.3752 -0.4053 5.7140 25 6 10.5245 1.2582 1.8546 26 6 5.7300 1.4528 -0.7363 27 6 4.2638 1.4419 -1.1089 28 8 3.8354 1.4344 -2.2435 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6765 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 4.3702 0.4437 1.6447 37 1 3.9374 2.1544 1.9385 38 1 8.3491 1.8726 0.4333 39 1 9.7111 -0.4680 0.0484 40 1 9.4471 -1.5688 1.4695 41 1 10.9610 -0.5134 3.8042 42 1 13.8434 -3.6872 5.2124 43 1 10.8022 1.7646 2.7790 44 1 10.6671 1.8811 0.9716 45 1 6.2729 2.1761 -1.3448 46 1 6.1600 0.4577 -0.8505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020651149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:25 Heat of formation + Delta-G solvation = -40.969486 kcal Electronic energy + Delta-G solvation = -25386.531711 eV Core-core repulsion = 21697.898260 eV Total energy + Delta-G solvation = -3688.633450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 3.73 seconds Orbital eigenvalues (eV) -41.16602 -39.77095 -38.26457 -36.66145 -35.15851 -34.27207 -32.82639 -31.72195 -30.32236 -28.09587 -26.84070 -25.29725 -24.89773 -23.38909 -22.28035 -22.14558 -20.45195 -19.77005 -19.03191 -17.89053 -17.54296 -17.17155 -16.30090 -16.24847 -15.59760 -15.20943 -14.92741 -14.84765 -14.35175 -14.21436 -13.96117 -13.89239 -13.52778 -13.23508 -13.05731 -12.77776 -12.55775 -12.32637 -12.23518 -12.18572 -12.12430 -11.90359 -11.79011 -11.66910 -11.10885 -10.99358 -10.89869 -10.45861 -10.39606 -10.28153 -9.96739 -9.77397 -9.62496 -9.08418 -9.00845 -8.89547 -7.35372 -5.82571 -3.19669 2.22933 2.41570 2.54118 3.05958 3.35267 3.39160 3.43906 3.84090 3.94860 4.37789 4.45749 4.54650 4.55690 4.59063 4.77455 4.85630 4.86750 4.99603 5.00794 5.07912 5.14104 5.16516 5.19780 5.33337 5.35598 5.36523 5.53538 5.61922 5.63901 5.70183 5.71223 5.84448 5.92902 6.01035 6.16059 6.17053 6.41750 6.50508 6.59779 6.72065 6.81209 7.41024 7.80550 7.93557 8.08342 8.36465 9.13580 9.85938 10.03939 11.35185 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.002563 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.199747 B =10922.355719 C =11511.015159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.117 3.883 6 C -0.125 4.125 7 H 0.119 0.881 8 C 0.522 3.478 9 O -0.533 6.533 10 N -0.712 5.712 11 C 0.121 3.879 12 H 0.111 0.889 13 C -0.182 4.182 14 C 0.177 3.823 15 H 0.077 0.923 16 N -0.729 5.729 17 C -0.250 4.250 18 H 0.093 0.907 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.883 3.117 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.165 4.165 26 C -0.146 4.146 27 C 0.520 3.480 28 O -0.530 6.530 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.399 0.601 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.127 14.620 -9.334 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.353 5.353 5 C -0.006 4.006 6 C -0.147 4.147 7 H 0.136 0.864 8 C 0.306 3.694 9 O -0.409 6.409 10 N -0.362 5.362 11 C 0.017 3.983 12 H 0.129 0.871 13 C -0.224 4.224 14 C 0.064 3.936 15 H 0.096 0.904 16 N -0.369 5.369 17 C -0.379 4.379 18 H 0.111 0.889 19 C -0.189 4.189 20 N -0.577 5.577 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.205 4.205 26 C -0.187 4.187 27 C 0.308 3.692 28 O -0.407 6.407 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.233 0.767 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.196 0.804 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.129 0.871 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.426 13.904 -9.264 27.965 hybrid contribution -0.498 0.553 0.928 1.190 sum -22.924 14.456 -8.336 28.354 Atomic orbital electron populations 1.21688 0.94880 1.02201 1.01917 1.21929 0.96366 0.96992 1.02959 1.21470 0.77487 0.97332 1.03216 1.48356 1.06414 1.73336 1.07243 1.21990 0.87800 1.03992 0.86830 1.22268 0.94732 1.02397 0.95261 0.86350 1.20055 0.83560 0.81741 0.84008 1.90750 1.81919 1.38501 1.29751 1.46078 1.05877 1.48441 1.35756 1.22716 0.84922 0.93581 0.97089 0.87106 1.24285 1.00312 0.98782 0.99050 1.20857 0.93880 0.89702 0.89153 0.90449 1.42540 1.44997 1.45472 1.03936 1.19084 1.11418 1.11349 0.96094 0.88949 1.24683 0.98444 0.98418 0.97320 1.69694 1.33712 1.29038 1.25277 0.86579 0.79645 0.78298 0.84192 1.20866 1.21607 1.20287 1.23918 0.94917 0.99339 1.02330 1.22370 0.95649 1.05645 0.94991 1.20754 0.88914 0.75126 0.84424 1.90737 1.78543 1.50375 1.21022 0.92500 0.92275 0.92513 0.91499 0.91458 0.90197 0.89928 0.88966 0.89647 0.76678 0.90718 0.90799 0.80386 0.92926 0.90931 0.89792 0.87059 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.15 0.37 -0.51 16 2 C -0.14 -1.08 6.26 -26.74 -0.17 -1.25 16 3 C 0.13 0.93 5.93 -4.04 -0.02 0.91 16 4 N -0.62 -5.39 2.93 -172.42 -0.51 -5.90 16 5 C 0.12 0.93 6.66 -3.13 -0.02 0.91 16 6 C -0.12 -0.91 3.54 -90.14 -0.32 -1.23 16 7 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 8 C 0.52 5.75 7.07 -10.98 -0.08 5.67 16 9 O -0.53 -8.26 15.17 5.56 0.08 -8.18 16 10 N -0.71 -7.23 5.30 -53.02 -0.28 -7.51 16 11 C 0.12 1.68 4.12 -67.12 -0.28 1.40 16 12 H 0.11 1.86 7.47 -51.93 -0.39 1.48 16 13 C -0.18 -2.82 7.68 -25.92 -0.20 -3.02 16 14 C 0.18 3.11 4.56 -67.12 -0.31 2.81 16 15 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 16 N -0.73 -16.61 5.11 -52.64 -0.27 -16.88 16 17 C -0.25 -6.88 10.45 -15.06 -0.16 -7.03 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 21 Si 0.88 21.95 27.74 -169.99 -4.72 17.23 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.45 6.51 56.52 0.37 -6.08 16 25 C -0.17 -2.22 7.58 -25.92 -0.20 -2.41 16 26 C -0.15 -1.10 6.37 -26.75 -0.17 -1.27 16 27 C 0.52 5.46 8.02 -10.86 -0.09 5.37 16 28 O -0.53 -7.54 17.60 5.56 0.10 -7.44 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 36 H 0.09 0.91 7.06 -51.93 -0.37 0.54 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 2.74 8.73 -40.82 -0.36 2.38 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.36 8.23 5.76 -40.82 -0.23 7.99 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 45 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.11 0.90 7.89 -51.92 -0.41 0.50 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -34.99 377.33 -8.53 -43.52 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.67 Total: 7.09 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.73 Total: 0.47 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.28 Total: -58.38 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.18 Total: -15.62 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.99 -8.53 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020651149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.548 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.73 seconds