Wall clock time and date at job start Tue Mar 31 2020 10:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47201 * 2 1 4 4 H 1.08999 * 109.87265 * 303.78327 * 3 2 1 5 5 C 1.54329 * 110.01318 * 182.68094 * 3 2 1 6 6 H 1.08993 * 110.72018 * 336.68558 * 5 3 2 7 7 N 1.46506 * 110.71658 * 99.95455 * 5 3 2 8 8 C 1.34770 * 119.99808 * 204.99943 * 7 5 3 9 9 O 1.21284 * 120.00239 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00113 * 179.97438 * 8 7 5 11 11 H 1.09007 * 110.21673 * 41.93343 * 10 8 7 12 12 C 1.54486 * 110.24866 * 280.00449 * 10 8 7 13 13 C 1.54630 * 101.76300 * 215.58288 * 12 10 8 14 14 C 1.51282 * 104.19822 * 24.79420 * 13 12 10 15 15 O 1.21283 * 124.93810 * 163.70813 * 14 13 12 16 16 N 1.34417 * 110.11665 * 343.74911 * 14 13 12 17 17 C 1.46498 * 124.35011 * 179.58955 * 16 14 13 18 18 C 1.55158 * 102.94318 * 218.31864 * 5 3 2 19 19 C 1.54690 * 101.67813 * 35.33750 * 18 5 3 20 20 N 1.47028 * 109.88479 * 64.79856 * 3 2 1 21 21 C 1.36936 * 125.64470 * 298.47771 * 20 3 2 22 22 H 1.07996 * 120.00419 * 336.79233 * 21 20 3 23 23 C 1.38816 * 119.99642 * 156.78699 * 21 20 3 24 24 N 1.31619 * 120.00010 * 336.38366 * 23 21 20 25 25 Si 1.86799 * 119.99585 * 156.38680 * 23 21 20 26 26 H 1.48502 * 109.46845 * 269.99525 * 25 23 21 27 27 H 1.48499 * 109.47415 * 29.99993 * 25 23 21 28 28 H 1.48500 * 109.47032 * 150.00178 * 25 23 21 29 29 H 1.08997 * 109.47238 * 51.99871 * 1 2 3 30 30 H 1.09004 * 109.47466 * 171.99411 * 1 2 3 31 31 H 1.08999 * 109.47138 * 291.99389 * 1 2 3 32 32 H 1.08998 * 109.47310 * 239.99923 * 2 1 3 33 33 H 1.08997 * 109.47010 * 120.00133 * 2 1 3 34 34 H 0.96999 * 119.99895 * 25.00209 * 7 5 3 35 35 H 1.09002 * 110.96612 * 333.69730 * 12 10 8 36 36 H 1.08999 * 110.96925 * 97.42332 * 12 10 8 37 37 H 1.08997 * 110.48481 * 143.47556 * 13 12 10 38 38 H 1.08999 * 110.48507 * 265.98526 * 13 12 10 39 39 H 1.08996 * 109.47314 * 269.99830 * 17 16 14 40 40 H 1.08996 * 109.46996 * 30.00391 * 17 16 14 41 41 H 1.09004 * 109.47099 * 149.99961 * 17 16 14 42 42 H 1.08999 * 111.00082 * 153.57813 * 18 5 3 43 43 H 1.08998 * 111.00127 * 277.42537 * 18 5 3 44 44 H 1.09002 * 110.38975 * 204.36702 * 19 18 5 45 45 H 1.08995 * 110.23360 * 82.11089 * 19 18 5 46 46 H 0.97000 * 120.00108 * 353.59339 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6261 1.9818 -0.8520 5 6 3.5817 1.4575 -0.0678 6 1 3.9932 0.5190 0.3033 7 7 4.0377 1.7205 -1.4350 8 6 5.2534 1.2963 -1.8332 9 8 5.9697 0.6964 -1.0598 10 6 5.7223 1.5662 -3.2396 11 1 5.4573 2.5810 -3.5368 12 6 5.1003 0.5435 -4.2162 13 6 6.2510 0.3330 -5.2274 14 6 7.4990 0.6841 -4.4478 15 8 8.6288 0.3897 -4.7760 16 7 7.1734 1.3690 -3.3380 17 6 8.1424 1.8560 -2.3530 18 6 3.9594 2.6325 0.8725 19 6 2.8733 2.5184 1.9680 20 7 1.6516 2.1102 1.2510 21 6 0.3676 2.3228 1.6768 22 1 -0.4415 2.3466 0.9619 23 6 0.1060 2.5077 3.0275 24 7 0.9412 2.0382 3.9299 25 14 -1.4316 3.4227 3.5642 26 1 -1.1303 4.8723 3.6786 27 1 -2.5056 3.2180 2.5594 28 1 -1.8810 2.9052 4.8816 29 1 -0.3633 0.6327 -0.8098 30 1 -0.3634 -1.0177 -0.1431 31 1 -0.3633 0.3849 0.9529 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4647 2.1999 -2.0536 35 1 4.8565 -0.3870 -3.7034 36 1 4.2199 0.9584 -4.7069 37 1 6.2855 -0.7060 -5.5551 38 1 6.1335 0.9982 -6.0829 39 1 8.2979 1.0943 -1.5890 40 1 9.0884 2.0710 -2.8497 41 1 7.7616 2.7651 -1.8875 42 1 4.9558 2.4926 1.2915 43 1 3.8865 3.5878 0.3526 44 1 2.7230 3.4817 2.4556 45 1 3.1544 1.7614 2.7001 46 1 1.6891 1.4841 3.6568 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087686439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:50 Heat of formation + Delta-G solvation = -45.483688 kcal Electronic energy + Delta-G solvation = -26749.322662 eV Core-core repulsion = 23060.493461 eV Total energy + Delta-G solvation = -3688.829201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.12359 -39.48353 -38.01570 -36.33972 -34.44137 -33.06649 -32.66997 -32.00595 -29.26380 -28.22670 -26.84499 -26.75119 -24.51324 -22.99645 -21.91030 -21.00479 -20.44143 -19.86449 -19.39480 -17.82379 -17.43480 -17.04393 -16.25803 -16.14097 -15.24384 -15.01146 -14.52875 -14.19773 -14.12880 -13.88282 -13.71718 -13.63059 -13.31397 -12.98447 -12.92631 -12.73292 -12.50686 -12.38809 -12.19224 -12.07380 -11.72342 -11.51547 -11.18223 -11.00231 -10.81270 -10.55755 -10.35480 -10.19929 -10.15154 -10.11126 -9.96421 -9.90158 -9.46163 -8.92479 -8.85968 -8.47646 -6.99031 -6.09180 -3.26118 2.28712 2.39789 2.65802 3.13894 3.46370 3.48030 3.64225 3.94570 4.03105 4.35982 4.52205 4.55770 4.68633 4.95084 5.04983 5.09815 5.23525 5.27178 5.29111 5.34575 5.41089 5.42322 5.52609 5.61052 5.75616 5.84018 5.89339 5.97006 6.06693 6.13660 6.19429 6.27865 6.39971 6.49467 6.58389 6.68550 6.80628 6.88543 6.96400 7.02566 7.26949 7.45294 7.78105 7.89249 8.12835 8.43180 8.96592 9.74118 10.30236 11.19193 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.029395 B = 0.003160 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.304502 B = 8858.279366 C = 9374.654884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.158 3.842 4 H 0.037 0.963 5 C 0.135 3.865 6 H 0.095 0.905 7 N -0.709 5.709 8 C 0.505 3.495 9 O -0.527 6.527 10 C 0.112 3.888 11 H 0.105 0.895 12 C -0.121 4.121 13 C -0.153 4.153 14 C 0.518 3.482 15 O -0.532 6.532 16 N -0.600 5.600 17 C 0.100 3.900 18 C -0.144 4.144 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.326 4.326 22 H 0.067 0.933 23 C -0.025 4.025 24 N -0.917 5.917 25 Si 1.068 2.932 26 H -0.294 1.294 27 H -0.292 1.292 28 H -0.290 1.290 29 H 0.038 0.962 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.400 0.600 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.030 0.970 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 0.320 -16.554 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.051 3.949 4 H 0.054 0.946 5 C 0.030 3.970 6 H 0.113 0.887 7 N -0.360 5.360 8 C 0.289 3.711 9 O -0.403 6.403 10 C 0.004 3.996 11 H 0.123 0.877 12 C -0.159 4.159 13 C -0.193 4.193 14 C 0.306 3.694 15 O -0.409 6.409 16 N -0.334 5.334 17 C -0.041 4.041 18 C -0.184 4.184 19 C 0.018 3.982 20 N -0.317 5.317 21 C -0.454 4.454 22 H 0.084 0.916 23 C -0.227 4.227 24 N -0.558 5.558 25 Si 0.898 3.102 26 H -0.221 1.221 27 H -0.218 1.218 28 H -0.216 1.216 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.639 0.377 -14.731 16.162 hybrid contribution 0.424 -0.353 -1.488 1.587 sum 7.063 0.024 -16.218 17.690 Atomic orbital electron populations 1.21912 0.95589 0.98914 1.04274 1.21879 0.97132 0.97555 0.99654 1.21169 0.89525 0.92337 0.91908 0.94567 1.22141 0.95459 0.99301 0.80098 0.88652 1.46021 1.17256 1.58030 1.14719 1.20555 0.82119 0.79497 0.88976 1.90735 1.54409 1.40318 1.54801 1.21684 0.81995 1.01652 0.94279 0.87745 1.22616 0.98330 0.99541 0.95448 1.22356 0.92770 1.05231 0.98931 1.20831 0.90499 0.76838 0.81203 1.90730 1.23627 1.54851 1.71673 1.47850 1.05904 1.55864 1.23759 1.21575 0.91323 0.99732 0.91462 1.23165 0.99433 0.97645 0.98155 1.21509 0.85271 0.98699 0.92722 1.44504 1.01949 1.64780 1.20497 1.19694 0.83200 1.49280 0.93204 0.91567 1.25807 1.04285 1.00884 0.91759 1.70733 1.17196 1.32452 1.35396 0.83462 0.74846 0.76334 0.75551 1.22104 1.21839 1.21622 0.94266 0.95198 0.88889 0.94291 0.92625 0.76568 0.89200 0.87929 0.87563 0.87350 0.91273 0.90917 0.91359 0.91633 0.91614 0.92986 0.95239 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.88 37.15 0.33 -2.44 16 2 C -0.12 -2.21 5.48 -26.74 -0.15 -2.36 16 3 C 0.16 2.89 3.01 -66.95 -0.20 2.69 16 4 H 0.04 0.65 7.72 -51.93 -0.40 0.24 16 5 C 0.13 2.16 2.85 -66.09 -0.19 1.98 16 6 H 0.10 1.72 7.27 -51.93 -0.38 1.34 16 7 N -0.71 -8.48 5.18 -52.03 -0.27 -8.75 16 8 C 0.50 6.20 6.73 -10.99 -0.07 6.12 16 9 O -0.53 -8.66 14.59 5.55 0.08 -8.58 16 10 C 0.11 0.99 3.71 -68.16 -0.25 0.74 16 11 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.12 -0.79 6.68 -25.09 -0.17 -0.96 16 13 C -0.15 -1.10 6.86 -26.74 -0.18 -1.29 16 14 C 0.52 6.17 8.02 -10.86 -0.09 6.08 16 15 O -0.53 -8.41 17.59 5.56 0.10 -8.31 16 16 N -0.60 -6.73 3.01 -174.02 -0.52 -7.25 16 17 C 0.10 1.13 9.57 59.85 0.57 1.70 16 18 C -0.14 -2.49 6.76 -24.70 -0.17 -2.66 16 19 C 0.14 3.14 5.39 -2.65 -0.01 3.13 16 20 N -0.59 -13.47 2.96 -162.71 -0.48 -13.96 16 21 C -0.33 -8.30 7.32 -15.06 -0.11 -8.41 16 22 H 0.07 1.69 7.04 -52.49 -0.37 1.32 16 23 C -0.02 -0.67 5.20 -17.43 -0.09 -0.76 16 24 N -0.92 -26.48 13.04 55.49 0.72 -25.76 16 25 Si 1.07 24.25 29.98 -169.99 -5.10 19.15 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.04 0.68 8.13 -51.93 -0.42 0.25 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 2.05 5.45 -51.93 -0.28 1.77 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.40 3.68 8.37 -40.82 -0.34 3.34 16 35 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 36 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.90 7.46 -51.93 -0.39 0.51 16 40 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.24 8.13 -51.93 -0.42 0.82 16 45 H 0.03 0.71 6.67 -51.93 -0.35 0.36 16 46 H 0.27 7.85 5.94 -40.82 -0.24 7.61 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -33.24 363.54 -8.21 -41.45 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.44 Total: 2.96 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.78 Total: 3.58 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.55 Total: -55.71 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.18 Total: -16.89 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.10 Total: 19.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.24 -8.21 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087686439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.038 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds