Wall clock time and date at job start Tue Mar 31 2020 09:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00429 * 2 1 4 4 C 1.53002 * 109.47437 * 124.99819 * 3 2 1 5 5 C 1.50692 * 109.47132 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00706 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99576 * 180.02562 * 5 4 3 8 8 C 1.46918 * 120.63391 * 359.97153 * 7 5 4 9 9 C 1.53194 * 108.78089 * 233.63599 * 8 7 5 10 10 C 1.53043 * 109.30776 * 305.36420 * 9 8 7 11 11 C 1.53037 * 109.53875 * 61.36647 * 10 9 8 12 12 H 1.08996 * 109.49996 * 58.58482 * 11 10 9 13 13 N 1.46901 * 109.52542 * 178.66561 * 11 10 9 14 14 C 1.46901 * 111.00196 * 204.85296 * 13 11 10 15 15 C 1.50702 * 109.47203 * 179.97438 * 14 13 11 16 16 O 1.21291 * 119.99777 * 0.02562 * 15 14 13 17 17 N 1.34766 * 119.99802 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99945 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99991 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00248 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00189 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99775 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46905 * 90.00110 * 22 20 18 24 24 H 1.48504 * 109.47067 * 209.99586 * 22 20 18 25 25 H 1.48497 * 109.47412 * 330.00055 * 22 20 18 26 26 C 1.46929 * 120.62687 * 180.02562 * 7 5 4 27 27 H 1.07995 * 120.00435 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99390 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99390 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47070 * 4.99798 * 3 2 1 31 31 H 1.09004 * 109.47485 * 245.00109 * 3 2 1 32 32 H 1.08998 * 109.46749 * 59.99903 * 4 3 2 33 33 H 1.09005 * 109.46579 * 300.00278 * 4 3 2 34 34 H 1.09008 * 109.58859 * 113.84030 * 8 7 5 35 35 H 1.09002 * 109.58786 * 353.42232 * 8 7 5 36 36 H 1.09003 * 109.49900 * 185.41596 * 9 8 7 37 37 H 1.08990 * 109.49871 * 65.31214 * 9 8 7 38 38 H 1.09004 * 109.46377 * 301.34200 * 10 9 8 39 39 H 1.08996 * 109.44980 * 181.37869 * 10 9 8 40 40 H 1.00902 * 110.99640 * 80.90016 * 13 11 10 41 41 H 1.09003 * 109.46907 * 299.99965 * 14 13 11 42 42 H 1.09002 * 109.46846 * 59.99662 * 14 13 11 43 43 H 0.97001 * 120.00173 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99793 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.59209 * 6.57692 * 26 7 5 46 46 H 1.09003 * 109.58217 * 246.14973 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6382 1.1819 6 8 3.5698 3.4646 0.3216 7 7 4.7052 2.8869 2.1379 8 6 4.9812 1.8955 3.1865 9 6 4.8299 2.5690 4.5541 10 6 5.7257 3.8086 4.6096 11 6 5.2910 4.8030 3.5307 12 1 4.2478 5.0771 3.6876 13 7 6.1304 6.0063 3.6050 14 6 5.4308 7.1716 3.0478 15 6 6.3208 8.3841 3.1418 16 8 7.4291 8.2869 3.6248 17 7 5.8856 9.5762 2.6880 18 6 6.6950 10.6794 2.7739 19 1 7.6816 10.5930 3.2048 20 6 6.2462 11.9086 2.3067 21 7 7.0223 12.9659 2.3885 22 14 4.5395 12.0580 1.5620 23 1 3.5608 12.3862 2.6295 24 1 4.5378 13.1360 0.5406 25 1 4.1632 10.7709 0.9242 26 6 5.4471 4.1550 2.1518 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 3.7400 0.5064 1.0921 33 1 2.4772 1.2355 2.1130 34 1 5.9981 1.5191 3.0750 35 1 4.2732 1.0707 3.1051 36 1 5.1251 1.8714 5.3379 37 1 3.7911 2.8641 4.7013 38 1 6.7616 3.5161 4.4377 39 1 5.6385 4.2759 5.5904 40 1 7.0145 5.8595 3.1413 41 1 5.1837 6.9818 2.0033 42 1 4.5148 7.3491 3.6115 43 1 4.9994 9.6538 2.3014 44 1 6.7087 13.8240 2.0627 45 1 5.0465 4.8212 1.3876 46 1 6.5021 3.9633 1.9558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207636708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:51 Heat of formation + Delta-G solvation = -54.072020 kcal Electronic energy + Delta-G solvation = -25301.184484 eV Core-core repulsion = 21611.982866 eV Total energy + Delta-G solvation = -3689.201619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.57001 -38.65314 -37.85110 -35.73194 -35.22866 -33.89332 -32.59455 -31.65210 -31.34621 -29.83060 -26.57991 -26.05196 -24.23054 -23.76492 -22.51001 -20.87392 -20.19242 -19.41180 -19.13328 -18.30476 -17.42931 -16.51517 -16.21604 -15.92048 -15.42901 -15.20021 -14.86399 -14.66011 -14.55032 -14.32967 -13.97655 -13.77422 -13.48254 -13.21528 -13.10246 -12.90003 -12.80117 -12.47081 -12.39703 -12.03401 -11.80113 -11.58890 -11.46327 -11.40054 -11.18283 -11.15226 -11.08749 -10.80734 -10.56592 -10.07620 -9.95482 -9.71757 -9.55358 -9.06861 -8.56690 -8.17303 -8.11058 -6.29341 -3.80652 1.86231 2.37726 2.69071 3.06124 3.09895 3.17668 3.75562 4.00450 4.12304 4.13473 4.48213 4.55026 4.62100 4.65654 4.70043 4.73628 4.83890 4.90069 4.95358 5.01281 5.10830 5.22072 5.24430 5.35575 5.43838 5.46854 5.54877 5.58057 5.59828 5.64673 5.74274 5.78404 5.86016 5.93865 6.05214 6.13055 6.16984 6.23515 6.37340 7.06035 7.11817 7.52354 7.59934 7.92236 8.16092 8.61461 8.96593 9.44363 9.84270 10.83691 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.002731 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.674312 B =10249.089004 C =11637.293167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C -0.081 4.081 4 C -0.133 4.133 5 C 0.511 3.489 6 O -0.540 6.540 7 N -0.610 5.610 8 C 0.105 3.895 9 C -0.134 4.134 10 C -0.108 4.108 11 C 0.076 3.924 12 H 0.080 0.920 13 N -0.656 5.656 14 C 0.045 3.955 15 C 0.450 3.550 16 O -0.565 6.565 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.079 3.921 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.352 0.648 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.371 0.629 44 H 0.273 0.727 45 H 0.092 0.908 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.572 -28.725 -0.536 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C -0.119 4.119 4 C -0.173 4.173 5 C 0.300 3.700 6 O -0.417 6.417 7 N -0.344 5.344 8 C -0.018 4.018 9 C -0.173 4.173 10 C -0.146 4.146 11 C -0.036 4.036 12 H 0.098 0.902 13 N -0.288 5.288 14 C -0.087 4.087 15 C 0.236 3.764 16 O -0.447 6.447 17 N -0.229 5.229 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.705 3.295 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.045 4.045 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.172 0.828 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.054 -27.931 -0.061 30.039 hybrid contribution -1.266 0.103 -1.528 1.987 sum -12.320 -27.829 -1.589 30.475 Atomic orbital electron populations 1.23904 0.96002 1.01968 1.00988 1.22959 0.96092 0.98272 1.00062 1.20526 0.97847 0.95495 0.97993 1.21645 0.98941 0.95564 1.01183 1.20778 0.79337 0.89105 0.80827 1.90722 1.65509 1.48295 1.37129 1.48114 1.39896 1.18283 1.28091 1.21822 1.01904 0.90918 0.87155 1.21936 1.01069 0.97994 0.96321 1.21500 0.99311 0.94091 0.99726 1.21958 0.98286 0.90323 0.92999 0.90187 1.60249 1.06173 1.01300 1.61046 1.21784 0.97678 0.91011 0.98274 1.19672 0.88594 0.83908 0.84218 1.90562 1.21361 1.84813 1.47997 1.42208 1.16422 1.08543 1.55767 1.19429 1.00566 0.84690 1.38642 0.86265 1.25041 0.98162 0.95219 0.97752 1.69623 1.36336 0.99995 1.46169 0.86676 0.84380 0.78546 0.79849 1.19586 1.20166 1.19452 1.22539 0.96394 0.85583 0.99985 0.88474 0.88468 0.87335 0.90660 0.90174 0.88808 0.88762 0.91063 0.89664 0.90264 0.91407 0.91526 0.90434 0.82805 0.93520 0.89429 0.79651 0.91622 0.89011 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 14.32 29.01 0.42 -0.76 16 2 C -0.16 -0.98 9.52 -36.03 -0.34 -1.32 16 3 C -0.08 -0.64 4.95 -27.89 -0.14 -0.77 16 4 C -0.13 -0.92 4.03 -27.89 -0.11 -1.03 16 5 C 0.51 5.54 7.70 -10.99 -0.08 5.45 16 6 O -0.54 -8.19 15.40 5.56 0.09 -8.10 16 7 N -0.61 -5.84 2.97 -172.79 -0.51 -6.36 16 8 C 0.10 0.65 6.34 -3.71 -0.02 0.62 16 9 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 10 C -0.11 -1.01 5.49 -26.69 -0.15 -1.16 16 11 C 0.08 0.88 2.61 -67.61 -0.18 0.70 16 12 H 0.08 0.98 7.80 -51.93 -0.41 0.57 16 13 N -0.66 -10.00 5.88 -107.88 -0.63 -10.63 16 14 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 15 C 0.45 10.40 7.82 -10.99 -0.09 10.31 16 16 O -0.57 -15.29 15.78 5.55 0.09 -15.20 16 17 N -0.59 -14.39 5.09 -10.96 -0.06 -14.44 16 18 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 19 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -26.08 13.96 55.50 0.77 -25.30 16 22 Si 0.88 19.85 27.74 -169.99 -4.71 15.13 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -5.61 6.52 56.52 0.37 -5.24 16 26 C 0.08 0.91 5.68 -3.73 -0.02 0.89 16 27 H 0.10 0.48 8.06 -52.49 -0.42 0.05 16 28 H 0.10 0.61 7.84 -52.49 -0.41 0.20 16 29 H 0.11 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 31 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 33 H 0.09 0.51 7.69 -51.93 -0.40 0.11 16 34 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 35 H 0.09 0.34 5.93 -51.93 -0.31 0.03 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.35 5.53 8.12 -39.29 -0.32 5.21 16 41 H 0.05 0.73 7.56 -51.93 -0.39 0.34 16 42 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 43 H 0.37 8.02 5.76 -40.82 -0.24 7.78 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.09 1.27 6.47 -51.93 -0.34 0.93 16 46 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -34.83 373.30 -7.89 -42.72 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.39 Total: 11.78 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.16 Total: 4.78 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.43 Total: -56.73 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.71 Total: 15.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.83 -7.89 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207636708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.348 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds