Wall clock time and date at job start Tue Mar 31 2020 09:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00429 * 2 1 4 4 C 1.53002 * 109.47437 * 124.99819 * 3 2 1 5 5 C 1.50692 * 109.47132 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00706 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99576 * 180.02562 * 5 4 3 8 8 C 1.46918 * 120.63391 * 359.97153 * 7 5 4 9 9 C 1.53194 * 108.78089 * 233.63599 * 8 7 5 10 10 C 1.53043 * 109.30776 * 305.36420 * 9 8 7 11 11 C 1.53037 * 109.53875 * 61.36647 * 10 9 8 12 12 H 1.08996 * 109.49996 * 58.58482 * 11 10 9 13 13 N 1.46901 * 109.52542 * 178.66561 * 11 10 9 14 14 C 1.46901 * 111.00196 * 204.85296 * 13 11 10 15 15 C 1.50702 * 109.47203 * 179.97438 * 14 13 11 16 16 O 1.21291 * 119.99777 * 0.02562 * 15 14 13 17 17 N 1.34766 * 119.99802 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99945 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99991 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00248 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00189 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99775 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46905 * 90.00110 * 22 20 18 24 24 H 1.48504 * 109.47067 * 209.99586 * 22 20 18 25 25 H 1.48497 * 109.47412 * 330.00055 * 22 20 18 26 26 C 1.46929 * 120.62687 * 180.02562 * 7 5 4 27 27 H 1.07995 * 120.00435 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99390 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99390 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47070 * 4.99798 * 3 2 1 31 31 H 1.09004 * 109.47485 * 245.00109 * 3 2 1 32 32 H 1.08998 * 109.46749 * 59.99903 * 4 3 2 33 33 H 1.09005 * 109.46579 * 300.00278 * 4 3 2 34 34 H 1.09008 * 109.58859 * 113.84030 * 8 7 5 35 35 H 1.09002 * 109.58786 * 353.42232 * 8 7 5 36 36 H 1.09003 * 109.49900 * 185.41596 * 9 8 7 37 37 H 1.08990 * 109.49871 * 65.31214 * 9 8 7 38 38 H 1.09004 * 109.46377 * 301.34200 * 10 9 8 39 39 H 1.08996 * 109.44980 * 181.37869 * 10 9 8 40 40 H 1.00902 * 110.99640 * 80.90016 * 13 11 10 41 41 H 1.09003 * 109.46907 * 299.99965 * 14 13 11 42 42 H 1.09002 * 109.46846 * 59.99662 * 14 13 11 43 43 H 0.97001 * 120.00173 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99793 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.59209 * 6.57692 * 26 7 5 46 46 H 1.09003 * 109.58217 * 246.14973 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6382 1.1819 6 8 3.5698 3.4646 0.3216 7 7 4.7052 2.8869 2.1379 8 6 4.9812 1.8955 3.1865 9 6 4.8299 2.5690 4.5541 10 6 5.7257 3.8086 4.6096 11 6 5.2910 4.8030 3.5307 12 1 4.2478 5.0771 3.6876 13 7 6.1304 6.0063 3.6050 14 6 5.4308 7.1716 3.0478 15 6 6.3208 8.3841 3.1418 16 8 7.4291 8.2869 3.6248 17 7 5.8856 9.5762 2.6880 18 6 6.6950 10.6794 2.7739 19 1 7.6816 10.5930 3.2048 20 6 6.2462 11.9086 2.3067 21 7 7.0223 12.9659 2.3885 22 14 4.5395 12.0580 1.5620 23 1 3.5608 12.3862 2.6295 24 1 4.5378 13.1360 0.5406 25 1 4.1632 10.7709 0.9242 26 6 5.4471 4.1550 2.1518 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 3.7400 0.5064 1.0921 33 1 2.4772 1.2355 2.1130 34 1 5.9981 1.5191 3.0750 35 1 4.2732 1.0707 3.1051 36 1 5.1251 1.8714 5.3379 37 1 3.7911 2.8641 4.7013 38 1 6.7616 3.5161 4.4377 39 1 5.6385 4.2759 5.5904 40 1 7.0145 5.8595 3.1413 41 1 5.1837 6.9818 2.0033 42 1 4.5148 7.3491 3.6115 43 1 4.9994 9.6538 2.3014 44 1 6.7087 13.8240 2.0627 45 1 5.0465 4.8212 1.3876 46 1 6.5021 3.9633 1.9558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207636708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:50 Heat of formation + Delta-G solvation = -80.418697 kcal Electronic energy + Delta-G solvation = -25302.326962 eV Core-core repulsion = 21611.982866 eV Total energy + Delta-G solvation = -3690.344096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37999 -40.35383 -38.91980 -36.43359 -36.29496 -35.82499 -33.79699 -33.37159 -32.00502 -30.77315 -28.08919 -26.84026 -25.69158 -24.63223 -23.36828 -21.76942 -21.28909 -20.67168 -20.34391 -19.81974 -18.23619 -17.76809 -17.32641 -16.89364 -16.82308 -16.39571 -15.98877 -15.79489 -15.46931 -15.39392 -15.11558 -14.79949 -14.51379 -14.47384 -14.31647 -14.06618 -13.85144 -13.64710 -13.43002 -13.28972 -12.97444 -12.91742 -12.45040 -12.34867 -12.02751 -12.01566 -11.91418 -11.87525 -11.78877 -11.61747 -11.55280 -10.88903 -10.48858 -10.28402 -10.21470 -9.92027 -9.27325 -8.44532 -6.05225 1.28092 1.31906 1.40094 1.40933 1.59752 1.89257 1.97203 2.19419 2.66907 3.11148 3.31772 3.50566 3.77277 3.90306 3.95223 4.03240 4.09079 4.13984 4.17276 4.25580 4.27207 4.37645 4.44594 4.46917 4.53119 4.66293 4.70753 4.74823 4.83513 4.93777 4.94882 5.08955 5.13220 5.21887 5.30421 5.34501 5.46997 5.50354 5.77130 5.86856 5.92630 5.98709 6.28422 6.40231 6.55494 6.83769 7.14605 7.35167 7.90404 8.72883 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.002731 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.674312 B =10249.089004 C =11637.293167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.081 4.081 4 C -0.123 4.123 5 C 0.503 3.497 6 O -0.594 6.594 7 N -0.607 5.607 8 C 0.100 3.900 9 C -0.126 4.126 10 C -0.106 4.106 11 C 0.082 3.918 12 H 0.078 0.922 13 N -0.669 5.669 14 C 0.061 3.939 15 C 0.450 3.550 16 O -0.611 6.611 17 N -0.591 5.591 18 C -0.329 4.329 19 H 0.058 0.942 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.962 3.038 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.238 1.238 26 C 0.084 3.916 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.346 0.654 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.388 0.612 44 H 0.280 0.720 45 H 0.064 0.936 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.406 -32.084 -0.447 35.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C -0.119 4.119 4 C -0.162 4.162 5 C 0.293 3.707 6 O -0.475 6.475 7 N -0.340 5.340 8 C -0.021 4.021 9 C -0.165 4.165 10 C -0.144 4.144 11 C -0.028 4.028 12 H 0.096 0.904 13 N -0.300 5.300 14 C -0.072 4.072 15 C 0.238 3.762 16 O -0.495 6.495 17 N -0.233 5.233 18 C -0.458 4.458 19 H 0.076 0.924 20 C -0.212 4.212 21 N -0.572 5.572 22 Si 0.783 3.217 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.161 1.161 26 C -0.041 4.041 27 H 0.130 0.870 28 H 0.107 0.893 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.166 0.834 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.224 0.776 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.895 -31.347 0.063 34.288 hybrid contribution -0.252 1.115 -1.490 1.878 sum -14.147 -30.232 -1.427 33.408 Atomic orbital electron populations 1.24046 0.96203 1.02380 1.00722 1.22983 0.96068 0.98042 1.00226 1.20468 0.97687 0.95833 0.97875 1.21678 0.98967 0.93931 1.01674 1.21554 0.79158 0.89907 0.80046 1.90698 1.67201 1.50266 1.39293 1.48236 1.39072 1.18021 1.28644 1.22143 1.03675 0.90720 0.85598 1.21914 1.00268 0.96933 0.97381 1.21499 1.00146 0.94740 0.98035 1.21996 0.97448 0.89353 0.94025 0.90421 1.60309 1.06505 1.02241 1.60972 1.21664 0.96766 0.88705 1.00064 1.20844 0.88576 0.85017 0.81783 1.90537 1.23799 1.85751 1.49407 1.42055 1.16744 1.07890 1.56566 1.19017 0.99417 0.87142 1.40192 0.92374 1.26079 1.03724 0.93902 0.97516 1.69794 1.39273 1.00927 1.47170 0.85397 0.77238 0.79966 0.79147 1.17948 1.19773 1.16126 1.22302 0.96575 0.86449 0.98817 0.86983 0.89260 0.85311 0.92779 0.91885 0.85857 0.86371 0.89846 0.86455 0.87657 0.91415 0.91480 0.91451 0.83425 0.91624 0.87055 0.77618 0.91063 0.91761 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 14.32 67.78 0.97 -1.06 16 2 C -0.16 -1.57 9.52 25.64 0.24 -1.32 16 3 C -0.08 -1.16 4.95 29.85 0.15 -1.01 16 4 C -0.12 -1.32 4.03 29.85 0.12 -1.20 16 5 C 0.50 10.11 7.70 87.65 0.67 10.78 16 6 O -0.59 -18.14 15.40 -3.02 -0.05 -18.18 16 7 N -0.61 -10.29 2.97 -818.97 -2.43 -12.73 16 8 C 0.10 0.83 6.34 86.36 0.55 1.38 16 9 C -0.13 -1.18 6.08 30.67 0.19 -0.99 16 10 C -0.11 -1.76 5.49 30.62 0.17 -1.59 16 11 C 0.08 1.81 2.61 44.98 0.12 1.92 16 12 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 13 N -0.67 -20.09 5.88 -495.23 -2.91 -23.00 16 14 C 0.06 2.00 5.97 85.56 0.51 2.51 16 15 C 0.45 21.12 7.82 87.66 0.69 21.80 16 16 O -0.61 -34.48 15.78 -3.06 -0.05 -34.53 16 17 N -0.59 -29.07 5.09 -306.99 -1.56 -30.63 16 18 C -0.33 -19.73 10.16 84.04 0.85 -18.87 16 19 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 21 N -0.93 -57.00 13.96 21.66 0.30 -56.70 16 22 Si 0.96 40.33 27.74 68.60 1.90 42.23 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.24 -8.68 6.52 99.48 0.65 -8.03 16 26 C 0.08 1.84 5.68 86.35 0.49 2.33 16 27 H 0.11 0.81 8.06 -2.91 -0.02 0.79 16 28 H 0.09 1.04 7.84 -2.91 -0.02 1.01 16 29 H 0.13 0.79 8.06 -2.91 -0.02 0.77 16 30 H 0.05 0.99 7.75 -2.38 -0.02 0.97 16 31 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.12 0.64 7.94 -2.39 -0.02 0.62 16 33 H 0.12 0.75 7.69 -2.38 -0.02 0.73 16 34 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.12 0.28 5.93 -2.39 -0.01 0.27 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.35 11.01 8.12 -89.69 -0.73 10.28 16 41 H 0.07 1.97 7.56 -2.39 -0.02 1.95 16 42 H 0.11 3.20 8.06 -2.39 -0.02 3.18 16 43 H 0.39 16.15 5.76 -92.71 -0.53 15.62 16 44 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.06 1.79 6.47 -2.39 -0.02 1.77 16 46 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 Total: -1.00 -82.87 373.30 1.05 -81.82 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -0.34 Total: 37.33 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.19 Total: 14.40 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -6.61 Total: -123.06 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.09 Total: -52.72 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.90 Total: 42.23 kcal Total: -82.87 1.05 -81.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207636708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.398 kcal (2) G-P(sol) polarization free energy of solvation -82.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds